Wall clock time and date at job start Mon Mar 30 2020 23:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30504 * 125.65280 * 2 1 4 4 C 1.34121 * 109.25805 * 180.02562 * 3 2 1 5 5 C 1.34670 * 108.01981 * 359.72942 * 4 3 2 6 6 N 1.35045 * 125.65054 * 180.02562 * 2 1 3 7 7 C 1.46505 * 126.39787 * 359.96760 * 6 2 1 8 8 C 1.50698 * 109.47122 * 84.99685 * 7 6 2 9 9 O 1.21285 * 119.99902 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00207 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00008 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46948 * 174.94227 * 11 10 8 13 13 N 1.46505 * 115.55024 * 80.38544 * 12 11 10 14 14 C 1.36942 * 119.99583 * 65.27855 * 13 12 11 15 15 H 1.08007 * 119.99964 * 354.96284 * 14 13 12 16 16 C 1.38809 * 119.99798 * 174.68484 * 14 13 12 17 17 N 1.31619 * 120.00146 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47491 * 59.99928 * 18 16 14 20 20 H 1.48501 * 109.47325 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47212 * 299.99991 * 18 16 14 22 22 C 1.52999 * 117.50098 * 226.06177 * 12 11 10 23 23 C 1.53002 * 117.49982 * 294.71995 * 12 11 10 24 24 H 1.09001 * 109.47308 * 269.96165 * 1 2 3 25 25 H 1.09003 * 109.47507 * 29.95618 * 1 2 3 26 26 H 1.09003 * 109.47591 * 149.96200 * 1 2 3 27 27 H 1.07997 * 125.99065 * 180.02562 * 4 3 2 28 28 H 1.08003 * 126.58995 * 180.28483 * 5 4 3 29 29 H 1.09002 * 109.46954 * 324.99886 * 7 6 2 30 30 H 1.09002 * 109.46978 * 204.99789 * 7 6 2 31 31 H 0.97001 * 119.99786 * 359.97438 * 10 8 7 32 32 H 1.08994 * 109.47255 * 54.94194 * 11 10 8 33 33 H 1.08999 * 109.46673 * 294.93754 * 11 10 8 34 34 H 0.96998 * 120.00497 * 245.27841 * 13 12 11 35 35 H 0.97000 * 119.99696 * 180.02562 * 17 16 14 36 36 H 1.08998 * 117.49974 * 215.00780 * 22 12 11 37 37 H 1.09000 * 117.49520 * 0.02562 * 22 12 11 38 38 H 1.09000 * 117.49687 * 359.97438 * 23 12 11 39 39 H 1.08995 * 117.49858 * 144.97063 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5925 -0.6643 0.0051 6 7 2.2940 -1.0974 -0.0005 7 6 1.8425 -2.4911 -0.0004 8 6 1.5691 -2.9306 -1.4158 9 8 1.7356 -2.1561 -2.3341 10 7 1.1397 -4.1843 -1.6610 11 6 0.8745 -4.6117 -3.0370 12 6 0.5242 -6.1011 -3.0498 13 7 -0.8563 -6.4286 -2.6846 14 6 -1.8909 -6.0220 -3.4844 15 1 -1.6969 -5.3914 -4.3394 16 6 -3.1882 -6.4251 -3.1993 17 7 -3.4240 -7.1977 -2.1602 18 14 -4.5995 -5.8710 -4.2906 19 1 -4.3711 -6.3512 -5.6772 20 1 -5.8738 -6.4329 -3.7753 21 1 -4.6755 -4.3880 -4.2866 22 6 1.2029 -6.9774 -4.1044 23 6 1.6176 -7.0876 -2.6351 24 1 -0.3634 -0.0007 1.0277 25 1 -0.3634 0.8904 -0.5132 26 1 -0.3634 -0.8896 -0.5144 27 1 4.4098 1.3410 -0.0003 28 1 4.4776 -1.2832 0.0106 29 1 0.9299 -2.5773 0.5894 30 1 2.6168 -3.1238 0.4334 31 1 1.0069 -4.8039 -0.9266 32 1 1.7613 -4.4418 -3.6475 33 1 0.0399 -4.0387 -3.4409 34 1 -1.0375 -6.9335 -1.8765 35 1 -4.3306 -7.4796 -1.9613 36 1 0.6223 -7.7976 -4.5267 37 1 1.8994 -6.4930 -4.7888 38 1 2.5867 -6.6757 -2.3535 39 1 1.3100 -7.9801 -2.0903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670900669.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:24 Heat of formation + Delta-G solvation = 67.168037 kcal Electronic energy + Delta-G solvation = -21343.014783 eV Core-core repulsion = 18095.175906 eV Total energy + Delta-G solvation = -3247.838877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.14299 -39.54661 -37.62194 -34.00634 -33.98431 -33.10902 -31.72532 -29.81207 -28.74193 -26.86296 -25.81938 -23.98797 -22.06119 -21.44000 -20.80183 -19.83335 -19.17695 -17.47909 -17.26612 -17.08759 -15.90626 -15.36531 -15.31507 -14.92021 -14.35185 -14.23097 -13.88518 -13.69917 -13.32556 -13.16886 -13.03517 -12.80346 -12.61906 -12.33145 -12.04920 -12.02543 -11.08377 -11.06090 -10.94020 -10.46792 -10.35826 -10.28712 -9.97757 -9.79667 -9.56590 -9.38402 -8.95745 -8.84334 -8.31754 -7.17352 -5.92569 -3.23870 1.94636 2.54829 2.57806 3.17447 3.31598 3.36653 3.41546 3.42455 4.29659 4.47445 4.49517 4.50033 4.65254 4.78663 4.79885 5.09663 5.18702 5.27327 5.37816 5.42371 5.49154 5.51661 5.69060 5.75772 5.87783 5.97922 6.07817 6.25223 6.33115 6.43449 6.51745 6.59015 6.69568 6.75408 7.10993 7.58435 7.60371 8.11653 8.22016 8.25400 9.36939 9.88817 10.24180 11.29034 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.004230 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.865823 B = 6618.513549 C = 7572.409441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.223 3.777 3 N -0.495 5.495 4 C -0.029 4.029 5 C -0.054 4.054 6 N -0.440 5.440 7 C 0.083 3.917 8 C 0.490 3.510 9 O -0.529 6.529 10 N -0.705 5.705 11 C 0.148 3.852 12 C 0.126 3.874 13 N -0.689 5.689 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.007 4.007 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.284 1.284 22 C -0.186 4.186 23 C -0.185 4.185 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.403 0.597 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.388 0.612 35 H 0.257 0.743 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 5.941 6.832 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.040 4.040 3 N -0.215 5.215 4 C -0.176 4.176 5 C -0.186 4.186 6 N -0.123 5.123 7 C -0.044 4.044 8 C 0.273 3.727 9 O -0.405 6.405 10 N -0.356 5.356 11 C 0.023 3.977 12 C 0.032 3.968 13 N -0.328 5.328 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.203 4.203 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.226 4.226 23 C -0.223 4.223 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.185 0.815 28 H 0.189 0.811 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.237 0.763 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.223 0.777 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.192 7.212 6.041 15.400 hybrid contribution -0.532 -1.288 -0.080 1.396 sum 11.660 5.924 5.961 14.373 Atomic orbital electron populations 1.20209 0.85041 1.04520 1.03212 1.23260 0.95653 0.81097 1.03962 1.70237 1.02279 1.28110 1.20844 1.22196 0.94786 0.92666 1.07982 1.22599 0.86716 0.96923 1.12338 1.44843 1.06745 1.05990 1.54726 1.21708 1.04207 0.81675 0.96771 1.20600 0.78523 0.82775 0.90767 1.90780 1.51677 1.52561 1.45515 1.45862 1.66472 1.12469 1.10757 1.21303 1.00271 0.94941 0.81183 1.20154 0.85840 0.88686 1.02106 1.41775 0.97546 1.65609 1.27894 1.19117 0.86075 1.25102 1.07045 0.91023 1.24752 0.97516 0.99695 0.98341 1.69643 1.20376 1.39146 1.28677 0.86263 0.81713 0.78220 0.79977 1.21075 1.21607 1.21082 1.23373 1.03559 1.04300 0.91398 1.23081 0.98263 1.01824 0.99111 0.90169 0.89082 0.90735 0.81474 0.81131 0.85980 0.86084 0.76301 0.92010 0.90448 0.77719 0.93279 0.88496 0.89923 0.89538 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.04 36.00 0.36 -0.47 16 2 C 0.22 3.17 7.89 -155.41 -1.23 1.95 16 3 N -0.50 -7.76 11.25 -10.82 -0.12 -7.88 16 4 C -0.03 -0.38 11.87 -17.82 -0.21 -0.59 16 5 C -0.05 -0.64 11.58 -16.56 -0.19 -0.83 16 6 N -0.44 -5.56 2.24 -115.18 -0.26 -5.82 16 7 C 0.08 0.83 6.16 -5.19 -0.03 0.79 16 8 C 0.49 6.85 7.90 -10.99 -0.09 6.76 16 9 O -0.53 -9.86 16.42 5.55 0.09 -9.77 16 10 N -0.70 -9.65 5.51 -60.30 -0.33 -9.98 16 11 C 0.15 2.48 5.73 -4.04 -0.02 2.46 16 12 C 0.13 2.23 2.15 -131.81 -0.28 1.95 16 13 N -0.69 -15.48 5.49 -47.22 -0.26 -15.74 16 14 C -0.24 -6.27 9.56 -15.06 -0.14 -6.42 16 15 H 0.07 1.84 7.77 -52.48 -0.41 1.44 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 17 N -0.93 -26.39 13.06 55.49 0.72 -25.66 16 18 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.19 -3.03 10.11 -26.70 -0.27 -3.30 16 23 C -0.18 -2.68 10.14 -26.69 -0.27 -2.95 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 27 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.17 1.47 8.06 -52.48 -0.42 1.04 16 29 H 0.12 0.96 7.92 -51.93 -0.41 0.55 16 30 H 0.12 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.40 4.69 8.48 -40.82 -0.35 4.34 16 32 H 0.06 1.00 7.94 -51.93 -0.41 0.59 16 33 H 0.08 1.54 7.73 -51.93 -0.40 1.14 16 34 H 0.39 9.25 8.04 -40.82 -0.33 8.92 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -33.51 340.52 -8.17 -41.68 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -5.65 Total: 12.41 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.47 Total: -0.93 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.25 Total: -65.08 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.51 -8.17 -41.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670900669.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.850 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds