Wall clock time and date at job start Mon Mar 30 2020 23:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30504 * 125.65280 * 2 1 4 4 C 1.34121 * 109.25805 * 180.02562 * 3 2 1 5 5 C 1.34670 * 108.01981 * 359.72942 * 4 3 2 6 6 N 1.35045 * 125.65054 * 180.02562 * 2 1 3 7 7 C 1.46505 * 126.39787 * 359.96760 * 6 2 1 8 8 C 1.50698 * 109.47122 * 84.99685 * 7 6 2 9 9 O 1.21285 * 119.99902 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00207 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00008 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46948 * 174.94227 * 11 10 8 13 13 N 1.46505 * 115.55024 * 80.38544 * 12 11 10 14 14 C 1.36942 * 119.99583 * 65.27855 * 13 12 11 15 15 H 1.08007 * 119.99964 * 354.96284 * 14 13 12 16 16 C 1.38809 * 119.99798 * 174.68484 * 14 13 12 17 17 N 1.31619 * 120.00146 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47491 * 59.99928 * 18 16 14 20 20 H 1.48501 * 109.47325 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47212 * 299.99991 * 18 16 14 22 22 C 1.52999 * 117.50098 * 226.06177 * 12 11 10 23 23 C 1.53002 * 117.49982 * 294.71995 * 12 11 10 24 24 H 1.09001 * 109.47308 * 269.96165 * 1 2 3 25 25 H 1.09003 * 109.47507 * 29.95618 * 1 2 3 26 26 H 1.09003 * 109.47591 * 149.96200 * 1 2 3 27 27 H 1.07997 * 125.99065 * 180.02562 * 4 3 2 28 28 H 1.08003 * 126.58995 * 180.28483 * 5 4 3 29 29 H 1.09002 * 109.46954 * 324.99886 * 7 6 2 30 30 H 1.09002 * 109.46978 * 204.99789 * 7 6 2 31 31 H 0.97001 * 119.99786 * 359.97438 * 10 8 7 32 32 H 1.08994 * 109.47255 * 54.94194 * 11 10 8 33 33 H 1.08999 * 109.46673 * 294.93754 * 11 10 8 34 34 H 0.96998 * 120.00497 * 245.27841 * 13 12 11 35 35 H 0.97000 * 119.99696 * 180.02562 * 17 16 14 36 36 H 1.08998 * 117.49974 * 215.00780 * 22 12 11 37 37 H 1.09000 * 117.49520 * 0.02562 * 22 12 11 38 38 H 1.09000 * 117.49687 * 359.97438 * 23 12 11 39 39 H 1.08995 * 117.49858 * 144.97063 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5925 -0.6643 0.0051 6 7 2.2940 -1.0974 -0.0005 7 6 1.8425 -2.4911 -0.0004 8 6 1.5691 -2.9306 -1.4158 9 8 1.7356 -2.1561 -2.3341 10 7 1.1397 -4.1843 -1.6610 11 6 0.8745 -4.6117 -3.0370 12 6 0.5242 -6.1011 -3.0498 13 7 -0.8563 -6.4286 -2.6846 14 6 -1.8909 -6.0220 -3.4844 15 1 -1.6969 -5.3914 -4.3394 16 6 -3.1882 -6.4251 -3.1993 17 7 -3.4240 -7.1977 -2.1602 18 14 -4.5995 -5.8710 -4.2906 19 1 -4.3711 -6.3512 -5.6772 20 1 -5.8738 -6.4329 -3.7753 21 1 -4.6755 -4.3880 -4.2866 22 6 1.2029 -6.9774 -4.1044 23 6 1.6176 -7.0876 -2.6351 24 1 -0.3634 -0.0007 1.0277 25 1 -0.3634 0.8904 -0.5132 26 1 -0.3634 -0.8896 -0.5144 27 1 4.4098 1.3410 -0.0003 28 1 4.4776 -1.2832 0.0106 29 1 0.9299 -2.5773 0.5894 30 1 2.6168 -3.1238 0.4334 31 1 1.0069 -4.8039 -0.9266 32 1 1.7613 -4.4418 -3.6475 33 1 0.0399 -4.0387 -3.4409 34 1 -1.0375 -6.9335 -1.8765 35 1 -4.3306 -7.4796 -1.9613 36 1 0.6223 -7.7976 -4.5267 37 1 1.8994 -6.4930 -4.7888 38 1 2.5867 -6.6757 -2.3535 39 1 1.3100 -7.9801 -2.0903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670900669.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:23 Heat of formation + Delta-G solvation = 43.992412 kcal Electronic energy + Delta-G solvation = -21344.019753 eV Core-core repulsion = 18095.175906 eV Total energy + Delta-G solvation = -3248.843847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.08656 -40.73603 -39.00284 -35.36987 -34.99294 -34.81321 -32.64186 -31.65555 -29.80116 -27.83339 -26.95250 -25.92581 -23.31581 -22.38832 -21.90527 -21.00624 -20.41529 -19.15998 -18.52714 -18.14562 -17.25490 -16.51709 -16.49904 -16.14568 -15.88550 -15.33909 -15.25311 -14.96828 -14.65819 -14.48404 -13.98472 -13.87256 -13.59515 -13.50067 -13.25375 -13.13562 -12.94118 -12.82200 -12.32042 -12.24383 -12.00548 -11.61601 -11.49033 -10.98605 -10.97235 -10.76945 -10.42084 -10.10317 -9.25415 -9.03757 -7.97316 -5.25713 0.98745 1.46835 1.47299 1.48078 1.53276 1.69877 2.18868 2.26339 2.52114 3.06795 3.37002 3.59219 3.64283 3.66858 3.77107 3.83381 3.92201 4.13259 4.18747 4.29548 4.42925 4.56509 4.65218 4.72969 4.82373 4.84065 4.92670 4.98210 5.03407 5.17997 5.32803 5.35222 5.42488 5.54355 5.85975 6.16978 6.25993 6.52163 7.14116 7.16001 7.32941 8.05656 8.29456 9.24529 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.004230 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.865823 B = 6618.513549 C = 7572.409441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.199 3.801 3 N -0.534 5.534 4 C -0.057 4.057 5 C -0.047 4.047 6 N -0.444 5.444 7 C 0.088 3.912 8 C 0.492 3.508 9 O -0.580 6.580 10 N -0.696 5.696 11 C 0.162 3.838 12 C 0.101 3.899 13 N -0.697 5.697 14 C -0.233 4.233 15 H 0.067 0.933 16 C -0.063 4.063 17 N -0.962 5.962 18 Si 0.960 3.040 19 H -0.281 1.281 20 H -0.294 1.294 21 H -0.283 1.283 22 C -0.190 4.190 23 C -0.148 4.148 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.186 0.814 28 H 0.207 0.793 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.415 0.585 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.379 0.621 35 H 0.251 0.749 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.408 5.388 7.707 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 N -0.254 5.254 4 C -0.203 4.203 5 C -0.179 4.179 6 N -0.126 5.126 7 C -0.037 4.037 8 C 0.278 3.722 9 O -0.460 6.460 10 N -0.347 5.347 11 C 0.036 3.964 12 C 0.009 3.991 13 N -0.336 5.336 14 C -0.365 4.365 15 H 0.085 0.915 16 C -0.256 4.256 17 N -0.612 5.612 18 Si 0.790 3.210 19 H -0.208 1.208 20 H -0.220 1.220 21 H -0.210 1.210 22 C -0.231 4.231 23 C -0.185 4.185 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.203 0.797 28 H 0.223 0.777 29 H 0.164 0.836 30 H 0.184 0.816 31 H 0.252 0.748 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.213 0.787 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.069 6.649 6.920 17.030 hybrid contribution -0.988 -1.097 -0.391 1.528 sum 13.081 5.552 6.529 15.638 Atomic orbital electron populations 1.20242 0.84035 1.03876 1.04526 1.23642 0.96563 0.81634 1.04497 1.70181 1.03660 1.29542 1.22013 1.22686 0.94673 0.94074 1.08901 1.23193 0.87478 0.96945 1.10262 1.45025 1.06840 1.06625 1.54146 1.21960 1.06965 0.80860 0.93959 1.21285 0.77008 0.81909 0.92043 1.90767 1.53844 1.53800 1.47581 1.45737 1.66050 1.12948 1.09952 1.20930 0.99027 0.93543 0.82924 1.20332 0.84501 0.89627 1.04665 1.41789 0.99084 1.65479 1.27230 1.19343 0.87102 1.23503 1.06551 0.91520 1.25355 0.99554 1.00836 0.99806 1.69756 1.20166 1.40980 1.30274 0.85422 0.79277 0.77666 0.78657 1.20767 1.22034 1.20987 1.23380 1.03581 1.03216 0.92878 1.23154 0.98060 1.00184 0.97117 0.87844 0.89699 0.91327 0.79690 0.77650 0.83598 0.81595 0.74795 0.91160 0.94424 0.78713 0.93967 0.90576 0.87808 0.86090 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.04 71.23 0.71 -0.84 16 2 C 0.20 5.51 7.89 138.12 1.09 6.60 16 3 N -0.53 -16.59 11.25 -188.14 -2.12 -18.71 16 4 C -0.06 -1.45 11.87 83.52 0.99 -0.46 16 5 C -0.05 -1.00 11.58 83.09 0.96 -0.04 16 6 N -0.44 -10.20 2.24 -518.33 -1.16 -11.36 16 7 C 0.09 1.44 6.16 85.63 0.53 1.97 16 8 C 0.49 12.69 7.90 87.66 0.69 13.39 16 9 O -0.58 -21.17 16.42 -3.04 -0.05 -21.22 16 10 N -0.70 -17.48 5.51 -463.06 -2.55 -20.03 16 11 C 0.16 5.23 5.73 86.38 0.49 5.73 16 12 C 0.10 3.42 2.15 3.60 0.01 3.43 16 13 N -0.70 -31.12 5.49 -303.32 -1.67 -32.78 16 14 C -0.23 -12.12 9.56 84.03 0.80 -11.31 16 15 H 0.07 3.47 7.77 -2.91 -0.02 3.45 16 16 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 17 N -0.96 -55.11 13.06 21.65 0.28 -54.83 16 18 Si 0.96 44.81 29.55 68.60 2.03 46.84 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 C -0.19 -5.84 10.11 30.62 0.31 -5.53 16 23 C -0.15 -3.79 10.14 30.62 0.31 -3.48 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.07 1.60 7.83 -2.39 -0.02 1.58 16 27 H 0.19 3.64 8.06 -2.91 -0.02 3.61 16 28 H 0.21 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.15 1.75 7.92 -2.39 -0.02 1.73 16 30 H 0.17 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.42 8.40 8.48 -92.71 -0.79 7.62 16 32 H 0.07 2.16 7.94 -2.39 -0.02 2.14 16 33 H 0.04 1.51 7.73 -2.39 -0.02 1.49 16 34 H 0.38 18.02 8.04 -92.71 -0.75 17.27 16 35 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.10 2.74 8.08 -2.39 -0.02 2.72 16 38 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -74.77 340.52 1.67 -73.09 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.46 Total: 32.47 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 7.37 Total: 6.52 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -7.22 Total: -137.71 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -74.77 1.67 -73.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670900669.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.087 kcal (2) G-P(sol) polarization free energy of solvation -74.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds