Wall clock time and date at job start Tue Mar 31 2020 00:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47243 * 2 1 4 4 C 1.50704 * 109.46862 * 240.00473 * 2 1 3 5 5 H 1.08002 * 119.99700 * 239.99824 * 4 2 1 6 6 C 1.37877 * 120.00231 * 59.99819 * 4 2 1 7 7 N 1.31517 * 119.99967 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00218 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47207 * 89.99770 * 8 6 4 10 10 H 1.48499 * 109.47227 * 210.00224 * 8 6 4 11 11 H 1.48508 * 109.46848 * 329.99634 * 8 6 4 12 12 C 1.52998 * 109.47627 * 120.00404 * 2 1 3 13 13 N 1.46500 * 109.46683 * 300.00342 * 12 2 1 14 14 C 1.34778 * 119.99611 * 180.02562 * 13 12 2 15 15 O 1.21584 * 120.00193 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99858 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99973 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47110 * 179.97438 * 17 16 14 19 19 C 1.38624 * 120.44417 * 94.99540 * 18 17 16 20 20 C 1.38574 * 118.39673 * 179.70022 * 19 18 17 21 21 N 1.32345 * 119.10916 * 0.28037 * 20 19 18 22 22 C 1.31789 * 120.81651 * 359.97438 * 21 20 19 23 23 N 1.31809 * 121.75220 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47071 * 299.99490 * 1 2 3 25 25 H 1.09002 * 109.47422 * 59.99582 * 1 2 3 26 26 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46839 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46727 * 300.00523 * 3 2 1 29 29 H 1.08997 * 109.46670 * 60.00265 * 3 2 1 30 30 H 0.96999 * 119.99963 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47094 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46872 * 59.99872 * 12 2 1 33 33 H 0.96998 * 120.00035 * 359.97438 * 13 12 2 34 34 H 0.96998 * 119.99787 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.46868 * 59.99450 * 17 16 14 36 36 H 1.08999 * 109.47093 * 299.99354 * 17 16 14 37 37 H 1.08002 * 120.80485 * 359.97438 * 19 18 17 38 38 H 1.08001 * 120.45088 * 180.29937 * 20 19 18 39 39 H 1.08001 * 119.12241 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4120 10 1 2.4863 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7124 12 6 2.0401 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4453 14 6 1.8778 -0.4910 3.6694 15 8 2.5769 -1.4795 3.7809 16 7 1.4281 0.1439 4.7699 17 6 1.7821 -0.3566 6.1005 18 6 1.1584 0.5252 7.1513 19 6 -0.0625 0.1896 7.7157 20 6 -0.5941 1.0276 8.6828 21 7 0.0740 2.1163 9.0292 22 6 1.2302 2.4063 8.4672 23 7 1.7663 1.6328 7.5443 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7085 1.1614 -3.4844 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -1.7490 1.2491 33 1 0.9943 0.7580 2.3564 34 1 0.8701 0.9323 4.6810 35 1 2.8660 -0.3475 6.2155 36 1 1.4131 -1.3758 6.2153 37 1 -0.5846 -0.7058 7.4122 38 1 -1.5408 0.7954 9.1478 39 1 1.7524 3.3016 8.7709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001683233207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:09 Heat of formation + Delta-G solvation = 14.733479 kcal Electronic energy + Delta-G solvation = -20962.058837 eV Core-core repulsion = 17711.946227 eV Total energy + Delta-G solvation = -3250.112610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.40956 -39.58332 -36.62361 -35.38088 -33.60622 -33.25121 -32.32881 -30.76828 -27.65472 -25.71796 -25.50113 -24.76926 -24.63832 -22.89775 -20.69580 -18.78684 -18.49721 -17.94284 -17.10023 -16.00052 -15.84625 -15.74948 -15.23210 -14.98283 -14.70671 -14.12563 -14.08877 -13.67590 -13.34617 -12.97796 -12.84390 -12.48464 -12.17420 -11.38051 -11.27075 -11.19564 -11.13613 -10.86060 -10.68588 -10.37889 -10.22107 -10.14034 -9.80274 -9.63216 -9.62408 -9.30714 -9.09401 -8.78566 -8.41456 -8.21856 -6.01630 -4.11575 0.45683 0.61464 2.96231 3.28927 3.35925 3.40114 3.48190 3.56924 3.65738 3.79525 4.05807 4.39267 4.55815 4.65979 4.72467 5.09065 5.14493 5.25250 5.46884 5.51767 5.96680 6.20026 6.36851 6.45437 6.51649 6.59971 6.79333 6.83466 6.89943 7.03763 7.07973 7.25099 7.39673 7.56559 7.68779 7.70459 8.01822 8.12921 8.37561 8.43576 8.88076 8.98764 9.54236 10.99835 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040691 B = 0.002997 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.944195 B = 9339.534761 C = 9567.428988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.701 3.299 15 O -0.597 6.597 16 N -0.748 5.748 17 C 0.191 3.809 18 C 0.161 3.839 19 C -0.208 4.208 20 C 0.148 3.852 21 N -0.520 5.520 22 C 0.294 3.706 23 N -0.504 5.504 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.394 0.606 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 2.382 19.396 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.027 3.973 13 N -0.385 5.385 14 C 0.401 3.599 15 O -0.476 6.476 16 N -0.406 5.406 17 C 0.066 3.934 18 C 0.014 3.986 19 C -0.231 4.231 20 C -0.018 4.018 21 N -0.234 5.234 22 C 0.006 3.994 23 N -0.218 5.218 24 H 0.024 0.976 25 H 0.103 0.897 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.228 0.772 34 H 0.227 0.773 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.170 0.830 38 H 0.188 0.812 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.142 2.378 19.581 19.973 hybrid contribution -0.698 -0.380 -1.087 1.347 sum -3.840 1.998 18.494 18.993 Atomic orbital electron populations 1.21820 0.97803 0.99147 0.99981 1.18365 0.92774 0.92790 0.90548 1.21822 0.98631 0.98346 0.99986 1.20993 1.31442 1.12094 0.89859 0.92373 1.24880 0.94881 0.94915 0.98856 1.69807 1.36740 1.22770 1.23204 0.86566 0.79337 0.79371 0.82568 1.20727 1.21291 1.19878 1.21611 0.97963 0.95413 0.82277 1.45501 1.55515 1.32996 1.04481 1.15976 0.80457 0.82938 0.80529 1.90896 1.42973 1.27723 1.85980 1.44927 1.57919 1.33670 1.04048 1.19892 1.00738 0.94631 0.78158 1.21777 0.90956 0.91575 0.94265 1.22906 0.97481 1.03226 0.99456 1.23299 0.98540 0.88392 0.91607 1.68442 1.08979 1.18529 1.27436 1.25070 0.88787 0.97605 0.87908 1.68318 1.35518 1.04692 1.13322 0.97601 0.89650 0.95439 0.95401 0.89657 0.97573 0.93030 0.92851 0.92860 0.77154 0.77255 0.89418 0.89511 0.83006 0.81213 0.78518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.22 8.01 -34.44 -0.28 -13.50 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 8 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.15 3.21 4.50 -4.04 -0.02 3.19 16 13 N -0.73 -13.05 4.96 -65.22 -0.32 -13.37 16 14 C 0.70 12.27 8.57 -86.91 -0.74 11.52 16 15 O -0.60 -12.68 16.34 5.29 0.09 -12.60 16 16 N -0.75 -9.69 5.55 -66.41 -0.37 -10.06 16 17 C 0.19 2.14 6.03 -5.19 -0.03 2.10 16 18 C 0.16 1.56 6.19 -82.24 -0.51 1.05 16 19 C -0.21 -1.54 9.84 -39.32 -0.39 -1.93 16 20 C 0.15 1.06 11.30 -17.21 -0.19 0.86 16 21 N -0.52 -4.71 10.44 -14.58 -0.15 -4.86 16 22 C 0.29 2.64 12.29 -92.15 -1.13 1.51 16 23 N -0.50 -5.33 10.38 -10.79 -0.11 -5.44 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.39 6.34 6.18 -40.82 -0.25 6.09 16 34 H 0.39 4.39 8.48 -40.82 -0.35 4.04 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.20 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 325.94 15.07 4.91 4.91 Total: -1.00 -30.88 325.94 -8.61 -39.49 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.28 Total: 6.89 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -2.86 Total: 2.42 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.44 Total: -56.81 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.88 -8.61 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683233207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.225 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds