Wall clock time and date at job start Tue Mar 31 2020 00:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47243 * 2 1 4 4 C 1.50704 * 109.46862 * 240.00473 * 2 1 3 5 5 H 1.08002 * 119.99700 * 239.99824 * 4 2 1 6 6 C 1.37877 * 120.00231 * 59.99819 * 4 2 1 7 7 N 1.31517 * 119.99967 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00218 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47207 * 89.99770 * 8 6 4 10 10 H 1.48499 * 109.47227 * 210.00224 * 8 6 4 11 11 H 1.48508 * 109.46848 * 329.99634 * 8 6 4 12 12 C 1.52998 * 109.47627 * 120.00404 * 2 1 3 13 13 N 1.46500 * 109.46683 * 300.00342 * 12 2 1 14 14 C 1.34778 * 119.99611 * 180.02562 * 13 12 2 15 15 O 1.21584 * 120.00193 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99858 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99973 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47110 * 179.97438 * 17 16 14 19 19 C 1.38624 * 120.44417 * 94.99540 * 18 17 16 20 20 C 1.38574 * 118.39673 * 179.70022 * 19 18 17 21 21 N 1.32345 * 119.10916 * 0.28037 * 20 19 18 22 22 C 1.31789 * 120.81651 * 359.97438 * 21 20 19 23 23 N 1.31809 * 121.75220 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47071 * 299.99490 * 1 2 3 25 25 H 1.09002 * 109.47422 * 59.99582 * 1 2 3 26 26 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46839 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46727 * 300.00523 * 3 2 1 29 29 H 1.08997 * 109.46670 * 60.00265 * 3 2 1 30 30 H 0.96999 * 119.99963 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47094 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46872 * 59.99872 * 12 2 1 33 33 H 0.96998 * 120.00035 * 359.97438 * 13 12 2 34 34 H 0.96998 * 119.99787 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.46868 * 59.99450 * 17 16 14 36 36 H 1.08999 * 109.47093 * 299.99354 * 17 16 14 37 37 H 1.08002 * 120.80485 * 359.97438 * 19 18 17 38 38 H 1.08001 * 120.45088 * 180.29937 * 20 19 18 39 39 H 1.08001 * 119.12241 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4120 10 1 2.4863 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7124 12 6 2.0401 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4453 14 6 1.8778 -0.4910 3.6694 15 8 2.5769 -1.4795 3.7809 16 7 1.4281 0.1439 4.7699 17 6 1.7821 -0.3566 6.1005 18 6 1.1584 0.5252 7.1513 19 6 -0.0625 0.1896 7.7157 20 6 -0.5941 1.0276 8.6828 21 7 0.0740 2.1163 9.0292 22 6 1.2302 2.4063 8.4672 23 7 1.7663 1.6328 7.5443 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7085 1.1614 -3.4844 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -1.7490 1.2491 33 1 0.9943 0.7580 2.3564 34 1 0.8701 0.9323 4.6810 35 1 2.8660 -0.3475 6.2155 36 1 1.4131 -1.3758 6.2153 37 1 -0.5846 -0.7058 7.4122 38 1 -1.5408 0.7954 9.1478 39 1 1.7524 3.3016 8.7709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001683233207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:07 Heat of formation + Delta-G solvation = -5.920776 kcal Electronic energy + Delta-G solvation = -20962.954473 eV Core-core repulsion = 17711.946227 eV Total energy + Delta-G solvation = -3251.008246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.07399 -40.97707 -38.29539 -36.45445 -35.00743 -34.37911 -33.21004 -32.46899 -28.67820 -27.54877 -27.36913 -26.29047 -25.37231 -23.70684 -22.07815 -20.58332 -19.79398 -18.60058 -18.03324 -17.74372 -17.02711 -16.61864 -16.59463 -16.36269 -15.82387 -15.38201 -15.12334 -14.98879 -14.67952 -14.54775 -14.00691 -13.85380 -13.72620 -13.16636 -13.08506 -12.66973 -12.58111 -12.23638 -12.12715 -11.88034 -11.86639 -11.46789 -11.41078 -11.15366 -10.69898 -10.65771 -10.42250 -10.34873 -10.28117 -9.70072 -8.01129 -6.16682 -0.20583 0.01907 1.43780 1.46624 1.54764 1.79295 2.18017 2.47290 2.78473 2.90805 3.22699 3.26096 3.42391 3.45567 3.92909 4.14291 4.39357 4.43935 4.55945 4.57939 4.63485 4.73142 4.78505 5.01546 5.07487 5.11668 5.21921 5.33545 5.38659 5.40731 5.62828 5.68590 5.68884 5.96438 6.00611 6.16665 6.23532 6.45115 6.87920 7.05864 7.09541 7.51106 7.59322 8.97854 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040691 B = 0.002997 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.944195 B = 9339.534761 C = 9567.428988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.702 3.298 15 O -0.636 6.636 16 N -0.728 5.728 17 C 0.193 3.807 18 C 0.147 3.853 19 C -0.198 4.198 20 C 0.149 3.851 21 N -0.534 5.534 22 C 0.286 3.714 23 N -0.530 5.530 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.019 0.981 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.405 0.595 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.177 0.823 38 H 0.205 0.795 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 2.706 20.763 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.043 3.957 13 N -0.380 5.380 14 C 0.402 3.598 15 O -0.518 6.518 16 N -0.386 5.386 17 C 0.068 3.932 18 C 0.001 3.999 19 C -0.220 4.220 20 C -0.017 4.017 21 N -0.248 5.248 22 C -0.002 4.002 23 N -0.245 5.245 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.241 0.759 34 H 0.242 0.758 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.194 0.806 38 H 0.221 0.779 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.419 2.741 20.981 21.615 hybrid contribution -0.334 -0.467 -1.421 1.533 sum -4.754 2.274 19.560 20.257 Atomic orbital electron populations 1.21656 0.97037 0.98730 1.00296 1.18356 0.93313 0.92929 0.90267 1.21668 0.97900 0.97980 1.00260 1.21290 1.31679 1.12185 0.91542 0.93609 1.25450 0.95163 0.95581 1.00969 1.69911 1.37069 1.23315 1.23576 0.85759 0.78687 0.78482 0.79883 1.20432 1.20917 1.20072 1.21143 0.96724 0.94785 0.83022 1.45198 1.55763 1.33170 1.03873 1.16046 0.80089 0.82613 0.81083 1.90873 1.44728 1.29598 1.86579 1.44740 1.56868 1.33325 1.03618 1.19930 1.00056 0.95671 0.77515 1.21591 0.92031 0.91677 0.94627 1.23135 0.96339 1.03836 0.98703 1.23908 0.99331 0.87425 0.91032 1.68508 1.09155 1.19472 1.27711 1.25470 0.89063 0.98042 0.87582 1.68268 1.36438 1.05458 1.14359 0.94505 0.91990 0.96163 0.96383 0.91936 0.94616 0.93062 0.94641 0.94250 0.75886 0.75830 0.91089 0.88443 0.80572 0.77860 0.76642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 2 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 4 C -0.53 -27.91 8.01 25.60 0.21 -27.71 16 5 H 0.05 2.47 7.74 -2.91 -0.02 2.44 16 6 C 0.03 1.47 5.15 84.65 0.44 1.91 16 7 N -0.90 -47.91 9.35 21.45 0.20 -47.71 16 8 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.17 7.14 4.50 86.38 0.39 7.53 16 13 N -0.72 -24.97 4.96 -478.53 -2.37 -27.35 16 14 C 0.70 23.85 8.57 179.05 1.53 25.38 16 15 O -0.64 -26.93 16.34 -3.98 -0.07 -26.99 16 16 N -0.73 -17.69 5.55 -482.29 -2.68 -20.37 16 17 C 0.19 4.08 6.03 85.63 0.52 4.59 16 18 C 0.15 2.59 6.19 42.58 0.26 2.85 16 19 C -0.20 -2.36 9.84 22.44 0.22 -2.14 16 20 C 0.15 1.67 11.30 84.70 0.96 2.63 16 21 N -0.53 -8.50 10.44 -200.05 -2.09 -10.58 16 22 C 0.29 4.70 12.29 180.88 2.22 6.92 16 23 N -0.53 -10.55 10.38 -188.06 -1.95 -12.51 16 24 H 0.04 1.34 6.86 -2.39 -0.02 1.32 16 25 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 29 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 30 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.40 12.09 6.18 -92.71 -0.57 11.52 16 34 H 0.41 8.11 8.48 -92.71 -0.79 7.32 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.87 8.06 -2.39 -0.02 1.85 16 37 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.20 0.77 8.06 -2.91 -0.02 0.74 16 39 H 0.22 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -66.48 325.94 0.67 -65.81 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.28 Total: 20.20 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 7.88 Total: 14.92 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -8.89 Total: -118.51 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.07 Total: -26.99 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -66.48 0.67 -65.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683233207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.886 kcal (2) G-P(sol) polarization free energy of solvation -66.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds