Wall clock time and date at job start Mon Mar 30 2020 23:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30864 * 125.41599 * 2 1 4 4 C 1.33317 * 109.68195 * 179.97438 * 3 2 1 5 5 C 1.36663 * 107.78701 * 0.02562 * 4 3 2 6 6 C 1.46771 * 126.84585 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99933 * 0.02562 * 6 5 4 8 8 N 1.34767 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00310 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47565 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.46512 * 294.99978 * 10 9 8 12 12 N 1.46504 * 109.47117 * 54.99529 * 10 9 8 13 13 C 1.36933 * 119.99877 * 205.00161 * 12 10 9 14 14 H 1.07999 * 120.00265 * 0.02562 * 13 12 10 15 15 C 1.38813 * 120.00053 * 180.02562 * 13 12 10 16 16 N 1.31630 * 119.99679 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00311 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46974 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46920 * 119.99967 * 17 15 13 20 20 H 1.48496 * 109.47021 * 239.99628 * 17 15 13 21 21 C 1.53000 * 109.47352 * 175.00008 * 10 9 8 22 22 C 1.52996 * 117.49742 * 248.74636 * 21 10 9 23 23 C 1.52999 * 117.49870 * 180.08430 * 21 10 9 24 24 N 1.34490 * 125.42009 * 179.97438 * 2 1 3 25 25 H 0.97005 * 126.46844 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.47030 * 90.02349 * 1 2 3 27 27 H 1.08995 * 109.47297 * 210.02555 * 1 2 3 28 28 H 1.09010 * 109.46957 * 330.02464 * 1 2 3 29 29 H 1.08003 * 126.10976 * 179.97438 * 4 3 2 30 30 H 0.96999 * 120.00275 * 0.02562 * 8 6 5 31 31 H 1.09007 * 109.47042 * 300.00287 * 9 8 6 32 32 H 1.08992 * 109.47297 * 59.99888 * 9 8 6 33 33 H 0.96996 * 119.99779 * 25.00570 * 12 10 9 34 34 H 0.96998 * 119.99526 * 179.97438 * 16 15 13 35 35 H 1.08997 * 115.54843 * 34.41306 * 21 10 9 36 36 H 1.09002 * 117.50261 * 359.97438 * 22 21 10 37 37 H 1.09001 * 117.50173 * 145.01757 * 22 21 10 38 38 H 1.08993 * 117.49902 * 214.97536 * 23 21 10 39 39 H 1.09001 * 117.50099 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5975 -0.6608 0.0004 6 6 4.8029 -1.4983 0.0003 7 8 5.9038 -0.9800 0.0009 8 7 4.6903 -2.8412 -0.0005 9 6 5.8934 -3.6772 -0.0011 10 6 5.4892 -5.1528 -0.0025 11 1 4.9742 -5.3893 0.9286 12 7 4.5961 -5.4135 -1.1342 13 6 3.7132 -6.4589 -1.0831 14 1 3.6749 -7.0911 -0.2083 15 6 2.8674 -6.7062 -2.1556 16 7 2.9136 -5.9354 -3.2216 17 14 1.6625 -8.1320 -2.0855 18 1 1.8065 -8.8384 -0.7873 19 1 0.2764 -7.6155 -2.2164 20 1 1.9463 -9.0749 -3.1970 21 6 6.7404 -6.0243 -0.1289 22 6 6.9317 -6.8005 -1.4334 23 6 6.5452 -7.5416 -0.1510 24 7 2.2865 -1.0960 0.0005 25 1 1.9849 -2.0180 0.0006 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8903 0.5135 29 1 4.3978 1.3722 0.0003 30 1 3.8127 -3.2544 -0.0013 31 1 6.4849 -3.4620 -0.8911 32 1 6.4851 -3.4631 0.8888 33 1 4.6302 -4.8455 -1.9198 34 1 2.3228 -6.1084 -3.9711 35 1 7.6334 -5.6388 0.3630 36 1 6.1661 -6.6908 -2.2014 37 1 7.9507 -6.9261 -1.7995 38 1 7.3100 -8.1544 0.3261 39 1 5.5254 -7.9191 -0.0750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690145134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:27 Heat of formation + Delta-G solvation = 52.868442 kcal Electronic energy + Delta-G solvation = -21535.529732 eV Core-core repulsion = 18287.070778 eV Total energy + Delta-G solvation = -3248.458954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.16433 -39.16159 -37.63966 -34.64812 -33.41522 -32.65360 -31.94787 -30.86089 -28.51194 -27.18755 -24.09028 -23.22883 -22.05899 -21.52954 -20.70152 -20.25094 -19.32884 -18.39260 -17.31212 -15.96745 -15.72859 -15.70785 -15.18241 -14.75102 -14.49063 -14.08637 -13.86757 -13.60858 -13.39772 -13.16040 -13.00439 -12.73668 -12.56462 -12.12377 -11.39814 -11.26558 -11.00035 -10.95491 -10.59953 -10.39064 -10.19258 -10.16041 -9.91035 -9.77856 -9.53404 -9.25310 -9.10403 -8.86802 -8.39530 -7.19433 -5.95764 -3.26610 1.38233 2.84193 2.88703 3.28330 3.35847 3.38090 3.40367 3.52555 4.31227 4.39112 4.55446 4.85176 5.07170 5.24018 5.29161 5.34137 5.35243 5.47133 5.54514 5.66581 5.72411 5.76829 5.84980 5.89203 5.96113 6.00220 6.32366 6.34407 6.54972 6.58245 6.62907 6.76480 6.92366 7.19464 7.20520 7.54685 7.69648 7.94526 8.20963 8.36341 9.33540 9.86870 10.23255 11.25315 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.005517 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.059727 B = 5074.181049 C = 6688.248837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.234 3.766 3 N -0.499 5.499 4 C 0.063 3.937 5 C -0.082 4.082 6 C 0.591 3.409 7 O -0.539 6.539 8 N -0.710 5.710 9 C 0.119 3.881 10 C 0.191 3.809 11 H 0.057 0.943 12 N -0.718 5.718 13 C -0.242 4.242 14 H 0.072 0.928 15 C -0.008 4.008 16 N -0.927 5.927 17 Si 0.902 3.098 18 H -0.280 1.280 19 H -0.293 1.293 20 H -0.291 1.291 21 C -0.178 4.178 22 C -0.162 4.162 23 C -0.175 4.175 24 N -0.546 5.546 25 H 0.426 0.574 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.182 0.818 30 H 0.404 0.596 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 6.232 7.320 9.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.030 4.030 3 N -0.220 5.220 4 C -0.091 4.091 5 C -0.198 4.198 6 C 0.377 3.623 7 O -0.416 6.416 8 N -0.361 5.361 9 C -0.005 4.005 10 C 0.080 3.920 11 H 0.075 0.925 12 N -0.360 5.360 13 C -0.372 4.372 14 H 0.090 0.910 15 C -0.205 4.205 16 N -0.575 5.575 17 Si 0.733 3.267 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.218 1.218 21 C -0.200 4.200 22 C -0.199 4.199 23 C -0.212 4.212 24 N -0.151 5.151 25 H 0.265 0.735 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.199 0.801 30 H 0.240 0.760 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.221 0.779 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.899 7.234 7.360 10.359 hybrid contribution -0.777 -2.302 -0.414 2.465 sum -1.676 4.932 6.946 8.682 Atomic orbital electron populations 1.20298 0.84384 1.04368 1.04149 1.23418 0.95865 0.81639 1.02097 1.70168 1.02140 1.28283 1.21405 1.22591 0.94666 0.91261 1.00561 1.21249 0.83866 0.96009 1.18717 1.16852 0.86835 0.81759 0.76877 1.90816 1.25862 1.73513 1.51431 1.45866 1.11170 1.05176 1.73881 1.21638 0.86390 0.90535 1.01905 1.20009 0.89745 0.89295 0.92913 0.92505 1.42502 1.41272 1.35644 1.16596 1.19214 1.11384 1.05731 1.00905 0.90966 1.24727 1.00115 0.99123 0.96487 1.69675 1.41391 1.39909 1.06483 0.86201 0.80947 0.82155 0.77351 1.20569 1.21970 1.21811 1.23046 1.00014 0.94057 1.02848 1.22915 1.01139 1.03451 0.92442 1.22850 1.02486 0.93541 1.02328 1.43308 1.06104 1.10559 1.55152 0.73467 0.89554 0.90338 0.88860 0.80066 0.76042 0.91315 0.91465 0.77947 0.93439 0.89515 0.86378 0.91209 0.90962 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.51 36.01 0.38 -0.22 16 2 C 0.23 2.92 8.12 -155.61 -1.26 1.66 16 3 N -0.50 -7.38 11.20 -10.58 -0.12 -7.50 16 4 C 0.06 0.95 11.66 -17.48 -0.20 0.75 16 5 C -0.08 -1.24 7.08 -82.14 -0.58 -1.83 16 6 C 0.59 9.94 7.79 -12.82 -0.10 9.84 16 7 O -0.54 -10.46 16.90 5.20 0.09 -10.37 16 8 N -0.71 -11.28 5.38 -61.59 -0.33 -11.62 16 9 C 0.12 1.94 5.22 -4.04 -0.02 1.92 16 10 C 0.19 3.33 2.86 -67.93 -0.19 3.14 16 11 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 12 N -0.72 -15.13 3.08 -53.42 -0.16 -15.30 16 13 C -0.24 -5.72 8.15 -15.06 -0.12 -5.84 16 14 H 0.07 1.70 6.91 -52.49 -0.36 1.34 16 15 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 16 N -0.93 -25.24 13.06 55.49 0.72 -24.52 16 17 Si 0.90 20.51 29.55 -169.99 -5.02 15.49 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.18 -2.97 5.71 -90.62 -0.52 -3.49 16 22 C -0.16 -2.94 9.74 -26.69 -0.26 -3.20 16 23 C -0.18 -3.01 9.87 -26.69 -0.26 -3.27 16 24 N -0.55 -6.95 6.07 -7.02 -0.04 -6.99 16 25 H 0.43 4.66 8.32 -40.82 -0.34 4.33 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.18 2.47 8.06 -52.48 -0.42 2.04 16 30 H 0.40 6.26 7.38 -40.82 -0.30 5.96 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.39 9.07 7.80 -40.82 -0.32 8.75 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 36 H 0.12 2.57 6.68 -51.93 -0.35 2.23 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.96 6.22 -51.93 -0.32 1.64 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -29.19 331.63 -8.46 -37.65 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -5.35 Total: 19.01 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.24 Total: -0.85 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: 0.07 Total: -65.92 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.19 -8.46 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690145134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.518 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds