Wall clock time and date at job start Mon Mar 30 2020 23:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30864 * 125.41599 * 2 1 4 4 C 1.33317 * 109.68195 * 179.97438 * 3 2 1 5 5 C 1.36663 * 107.78701 * 0.02562 * 4 3 2 6 6 C 1.46771 * 126.84585 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99933 * 0.02562 * 6 5 4 8 8 N 1.34767 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00310 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47565 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.46512 * 294.99978 * 10 9 8 12 12 N 1.46504 * 109.47117 * 54.99529 * 10 9 8 13 13 C 1.36933 * 119.99877 * 205.00161 * 12 10 9 14 14 H 1.07999 * 120.00265 * 0.02562 * 13 12 10 15 15 C 1.38813 * 120.00053 * 180.02562 * 13 12 10 16 16 N 1.31630 * 119.99679 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00311 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46974 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46920 * 119.99967 * 17 15 13 20 20 H 1.48496 * 109.47021 * 239.99628 * 17 15 13 21 21 C 1.53000 * 109.47352 * 175.00008 * 10 9 8 22 22 C 1.52996 * 117.49742 * 248.74636 * 21 10 9 23 23 C 1.52999 * 117.49870 * 180.08430 * 21 10 9 24 24 N 1.34490 * 125.42009 * 179.97438 * 2 1 3 25 25 H 0.97005 * 126.46844 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.47030 * 90.02349 * 1 2 3 27 27 H 1.08995 * 109.47297 * 210.02555 * 1 2 3 28 28 H 1.09010 * 109.46957 * 330.02464 * 1 2 3 29 29 H 1.08003 * 126.10976 * 179.97438 * 4 3 2 30 30 H 0.96999 * 120.00275 * 0.02562 * 8 6 5 31 31 H 1.09007 * 109.47042 * 300.00287 * 9 8 6 32 32 H 1.08992 * 109.47297 * 59.99888 * 9 8 6 33 33 H 0.96996 * 119.99779 * 25.00570 * 12 10 9 34 34 H 0.96998 * 119.99526 * 179.97438 * 16 15 13 35 35 H 1.08997 * 115.54843 * 34.41306 * 21 10 9 36 36 H 1.09002 * 117.50261 * 359.97438 * 22 21 10 37 37 H 1.09001 * 117.50173 * 145.01757 * 22 21 10 38 38 H 1.08993 * 117.49902 * 214.97536 * 23 21 10 39 39 H 1.09001 * 117.50099 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5975 -0.6608 0.0004 6 6 4.8029 -1.4983 0.0003 7 8 5.9038 -0.9800 0.0009 8 7 4.6903 -2.8412 -0.0005 9 6 5.8934 -3.6772 -0.0011 10 6 5.4892 -5.1528 -0.0025 11 1 4.9742 -5.3893 0.9286 12 7 4.5961 -5.4135 -1.1342 13 6 3.7132 -6.4589 -1.0831 14 1 3.6749 -7.0911 -0.2083 15 6 2.8674 -6.7062 -2.1556 16 7 2.9136 -5.9354 -3.2216 17 14 1.6625 -8.1320 -2.0855 18 1 1.8065 -8.8384 -0.7873 19 1 0.2764 -7.6155 -2.2164 20 1 1.9463 -9.0749 -3.1970 21 6 6.7404 -6.0243 -0.1289 22 6 6.9317 -6.8005 -1.4334 23 6 6.5452 -7.5416 -0.1510 24 7 2.2865 -1.0960 0.0005 25 1 1.9849 -2.0180 0.0006 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8903 0.5135 29 1 4.3978 1.3722 0.0003 30 1 3.8127 -3.2544 -0.0013 31 1 6.4849 -3.4620 -0.8911 32 1 6.4851 -3.4631 0.8888 33 1 4.6302 -4.8455 -1.9198 34 1 2.3228 -6.1084 -3.9711 35 1 7.6334 -5.6388 0.3630 36 1 6.1661 -6.6908 -2.2014 37 1 7.9507 -6.9261 -1.7995 38 1 7.3100 -8.1544 0.3261 39 1 5.5254 -7.9191 -0.0750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690145134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:27 Heat of formation + Delta-G solvation = 33.619573 kcal Electronic energy + Delta-G solvation = -21536.364425 eV Core-core repulsion = 18287.070778 eV Total energy + Delta-G solvation = -3249.293647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.24491 -40.51680 -39.10517 -36.02738 -35.12857 -33.80140 -32.95845 -32.41175 -29.99991 -28.26367 -25.72951 -24.70940 -23.33591 -22.89262 -21.79959 -21.48795 -20.68605 -19.70434 -19.05944 -17.19607 -17.08374 -16.90707 -16.55467 -16.33274 -15.86478 -15.54260 -15.22245 -14.95505 -14.69011 -14.49076 -14.25834 -13.76136 -13.43423 -13.22735 -12.96908 -12.90743 -12.67461 -12.60413 -12.11821 -11.93931 -11.64510 -11.57842 -11.24261 -11.17068 -11.05782 -10.84371 -10.63089 -10.21048 -9.51356 -9.01858 -7.90326 -5.18285 0.23035 1.46607 1.51315 1.57237 1.74156 1.84023 2.14339 2.27427 2.56632 3.12667 3.39251 3.44950 3.79983 3.84950 3.94968 4.07741 4.26515 4.30801 4.32548 4.48397 4.54949 4.60372 4.68264 4.74275 4.85784 4.90968 4.96881 5.09367 5.17258 5.20544 5.36658 5.46213 5.49132 5.66036 5.67620 6.21915 6.29243 6.42108 6.85251 7.04802 7.38128 8.07871 8.33771 9.31715 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.005517 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.059727 B = 5074.181049 C = 6688.248837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.244 3.756 3 N -0.525 5.525 4 C 0.058 3.942 5 C -0.103 4.103 6 C 0.593 3.407 7 O -0.569 6.569 8 N -0.705 5.705 9 C 0.127 3.873 10 C 0.192 3.808 11 H 0.063 0.937 12 N -0.720 5.720 13 C -0.216 4.216 14 H 0.077 0.923 15 C -0.064 4.064 16 N -0.963 5.963 17 Si 0.955 3.045 18 H -0.268 1.268 19 H -0.297 1.297 20 H -0.306 1.306 21 C -0.168 4.168 22 C -0.174 4.174 23 C -0.169 4.169 24 N -0.541 5.541 25 H 0.434 0.566 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.187 0.813 30 H 0.406 0.594 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.373 0.627 34 H 0.246 0.754 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 5.881 8.949 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.020 4.020 3 N -0.246 5.246 4 C -0.096 4.096 5 C -0.219 4.219 6 C 0.380 3.620 7 O -0.450 6.450 8 N -0.355 5.355 9 C 0.003 3.997 10 C 0.083 3.917 11 H 0.081 0.919 12 N -0.360 5.360 13 C -0.348 4.348 14 H 0.095 0.905 15 C -0.257 4.257 16 N -0.614 5.614 17 Si 0.787 3.213 18 H -0.193 1.193 19 H -0.225 1.225 20 H -0.234 1.234 21 C -0.189 4.189 22 C -0.211 4.211 23 C -0.206 4.206 24 N -0.147 5.147 25 H 0.275 0.725 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.204 0.796 30 H 0.242 0.758 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.206 0.794 34 H 0.055 0.945 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.156 6.849 9.043 11.403 hybrid contribution -0.681 -2.164 -0.866 2.428 sum -1.837 4.686 8.177 9.602 Atomic orbital electron populations 1.20540 0.81186 1.06089 1.05354 1.24280 0.97457 0.80898 0.99337 1.70207 1.02130 1.29381 1.22837 1.22817 0.95292 0.91485 1.00010 1.21013 0.84331 0.95878 1.20686 1.17008 0.86964 0.81869 0.76160 1.90790 1.27115 1.74002 1.53046 1.45800 1.11203 1.04999 1.73522 1.21555 0.86491 0.89546 1.02097 1.20143 0.89631 0.90316 0.91598 0.91877 1.42546 1.41585 1.34759 1.17118 1.19444 1.10072 1.05181 1.00121 0.90495 1.25278 1.02314 1.01322 0.96765 1.69809 1.42654 1.41775 1.07145 0.85344 0.79094 0.79829 0.77083 1.19282 1.22451 1.23391 1.23051 1.00382 0.93698 1.01816 1.22772 1.01035 1.05231 0.92086 1.22842 1.02074 0.94129 1.01578 1.43284 1.05274 1.11170 1.54924 0.72530 0.88434 0.88093 0.87676 0.79551 0.75763 0.92659 0.89665 0.79419 0.94452 0.86617 0.90444 0.89216 0.88111 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.51 71.24 0.75 -0.26 16 2 C 0.24 5.72 8.12 138.20 1.12 6.84 16 3 N -0.52 -15.02 11.20 -187.39 -2.10 -17.12 16 4 C 0.06 1.74 11.66 84.10 0.98 2.72 16 5 C -0.10 -3.08 7.08 40.01 0.28 -2.80 16 6 C 0.59 19.80 7.79 86.48 0.67 20.47 16 7 O -0.57 -22.12 16.90 -4.29 -0.07 -22.19 16 8 N -0.71 -21.91 5.38 -467.00 -2.51 -24.43 16 9 C 0.13 3.95 5.22 86.38 0.45 4.41 16 10 C 0.19 6.39 2.86 44.99 0.13 6.52 16 11 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 12 N -0.72 -30.08 3.08 -322.94 -0.99 -31.07 16 13 C -0.22 -10.13 8.15 84.03 0.69 -9.45 16 14 H 0.08 3.52 6.91 -2.91 -0.02 3.50 16 15 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 16 N -0.96 -53.43 13.06 21.65 0.28 -53.15 16 17 Si 0.95 42.32 29.55 68.60 2.03 44.34 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.31 -14.17 7.11 99.48 0.71 -13.47 16 21 C -0.17 -5.21 5.71 -10.80 -0.06 -5.28 16 22 C -0.17 -6.08 9.74 30.62 0.30 -5.78 16 23 C -0.17 -5.42 9.87 30.62 0.30 -5.12 16 24 N -0.54 -13.17 6.07 -176.11 -1.07 -14.24 16 25 H 0.43 8.95 8.32 -92.70 -0.77 8.18 16 26 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.19 5.13 8.06 -2.91 -0.02 5.10 16 30 H 0.41 12.28 7.38 -92.71 -0.68 11.60 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.37 17.73 7.80 -92.71 -0.72 17.01 16 34 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.12 3.00 8.11 -2.39 -0.02 2.98 16 36 H 0.08 3.40 6.68 -2.39 -0.02 3.39 16 37 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.08 2.93 6.22 -2.39 -0.01 2.91 16 Total: -1.00 -62.87 331.63 0.56 -62.31 By element: Atomic # 1 Polarization: 47.14 SS G_CDS: -1.08 Total: 46.06 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.08 Total: 9.49 kcal Atomic # 7 Polarization: -133.62 SS G_CDS: -6.39 Total: -140.01 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.07 Total: -22.19 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -62.87 0.56 -62.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690145134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.929 kcal (2) G-P(sol) polarization free energy of solvation -62.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds