Wall clock time and date at job start Tue Mar 31 2020 01:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21471 * 119.99693 * 359.97438 * 7 6 5 9 9 C 1.48535 * 119.99750 * 179.97438 * 7 6 5 10 10 N 1.32468 * 119.19168 * 359.97438 * 9 7 6 11 11 C 1.32098 * 120.77304 * 180.02562 * 10 9 7 12 12 C 1.38825 * 119.15877 * 0.02562 * 11 10 9 13 13 C 1.38779 * 118.50831 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.41940 * 180.02562 * 13 12 11 15 15 N 1.32122 * 119.16392 * 359.73720 * 13 12 11 16 16 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 17 17 C 1.36943 * 119.99752 * 84.72207 * 16 3 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 3 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 3 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 26 26 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 27 27 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 29 29 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 30 30 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 31 31 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 32 32 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 33 33 H 1.07992 * 120.42022 * 179.97438 * 11 10 9 34 34 H 1.07997 * 120.74437 * 179.97438 * 12 11 10 35 35 H 1.08996 * 109.47116 * 89.99850 * 14 13 12 36 36 H 1.08998 * 109.47426 * 210.00259 * 14 13 12 37 37 H 1.09012 * 109.46941 * 330.00010 * 14 13 12 38 38 H 0.97001 * 120.00384 * 265.00562 * 16 3 2 39 39 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1646 2.1467 0.2577 9 6 5.8908 4.4544 -0.0361 10 7 5.0272 5.4411 -0.2236 11 6 5.4421 6.6901 -0.3368 12 6 6.8014 6.9611 -0.2574 13 6 7.6773 5.9029 -0.0603 14 6 9.1613 6.1481 0.0330 15 7 7.1934 4.6785 0.0501 16 7 1.6525 2.0975 -1.2518 17 6 0.4135 2.6685 -1.3707 18 1 -0.2763 2.6399 -0.5402 19 6 0.0441 3.2841 -2.5588 20 7 -1.1464 3.8334 -2.6730 21 14 1.2369 3.3329 -3.9956 22 1 1.0378 2.1315 -4.8454 23 1 0.9912 4.5556 -4.8016 24 1 2.6302 3.3505 -3.4820 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8498 1.0377 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4410 3.5482 -0.1315 33 1 4.7331 7.4901 -0.4900 34 1 7.1688 7.9727 -0.3469 35 1 9.4353 6.3272 1.0726 36 1 9.6979 5.2753 -0.3390 37 1 9.4241 7.0192 -0.5674 38 1 2.2719 2.1231 -1.9978 39 1 -1.4044 4.2640 -3.5031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698598039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:13 Heat of formation + Delta-G solvation = -2.057309 kcal Electronic energy + Delta-G solvation = -21403.803611 eV Core-core repulsion = 18152.962898 eV Total energy + Delta-G solvation = -3250.840713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.34858 -40.49638 -38.42288 -35.85036 -35.16074 -34.16462 -33.69893 -32.07292 -30.13894 -29.28184 -26.77450 -25.10247 -24.18084 -23.82499 -21.86499 -21.56646 -19.83953 -18.84667 -18.83159 -17.21680 -16.96391 -16.77721 -16.68456 -16.09106 -15.84861 -15.48776 -15.07042 -14.72282 -14.63092 -14.42468 -14.19408 -14.15519 -13.80201 -13.19392 -13.11792 -12.91901 -12.88517 -12.37882 -12.29555 -12.12948 -11.91183 -11.76397 -11.60911 -11.40504 -11.26595 -10.93281 -10.65263 -10.42933 -10.16769 -9.28945 -7.94928 -5.26334 -0.65828 0.00724 1.38643 1.40060 1.45562 1.49027 1.70393 2.51439 2.71985 2.86343 3.12676 3.37704 3.48673 3.57916 3.81595 3.86129 4.00707 4.28032 4.30217 4.44019 4.54856 4.55214 4.67771 4.70970 4.76616 4.81648 5.03645 5.06384 5.09613 5.20153 5.34342 5.35249 5.52540 5.74965 5.87759 5.89090 6.27126 6.29042 6.81486 7.00724 7.13332 7.88074 8.06227 9.26242 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.005133 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.076420 B = 5454.041526 C = 6556.773395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.168 3.832 4 H 0.061 0.939 5 C 0.116 3.884 6 N -0.691 5.691 7 C 0.576 3.424 8 O -0.549 6.549 9 C 0.261 3.739 10 N -0.516 5.516 11 C 0.135 3.865 12 C -0.183 4.183 13 C 0.150 3.850 14 C -0.102 4.102 15 N -0.504 5.504 16 N -0.747 5.747 17 C -0.204 4.204 18 H 0.072 0.928 19 C -0.055 4.055 20 N -0.981 5.981 21 Si 0.939 3.061 22 H -0.288 1.288 23 H -0.301 1.301 24 H -0.263 1.263 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.418 0.582 33 H 0.209 0.791 34 H 0.203 0.797 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.361 0.639 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.286 6.372 6.656 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.060 3.940 4 H 0.079 0.921 5 C -0.007 4.007 6 N -0.343 5.343 7 C 0.358 3.642 8 O -0.426 6.426 9 C -0.009 4.009 10 N -0.234 5.234 11 C -0.030 4.030 12 C -0.204 4.204 13 C 0.004 3.996 14 C -0.159 4.159 15 N -0.221 5.221 16 N -0.391 5.391 17 C -0.334 4.334 18 H 0.089 0.911 19 C -0.247 4.247 20 N -0.632 5.632 21 Si 0.769 3.231 22 H -0.214 1.214 23 H -0.228 1.228 24 H -0.189 1.189 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.256 0.744 33 H 0.226 0.774 34 H 0.221 0.779 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.194 0.806 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 18.287 4.813 6.947 20.145 hybrid contribution 0.024 1.194 -1.391 1.834 sum 18.311 6.007 5.556 20.056 Atomic orbital electron populations 1.21695 0.96238 1.00516 1.01660 1.21952 0.96224 0.96559 1.01959 1.20714 0.90682 0.93727 0.88839 0.92115 1.21835 0.94283 0.81702 1.02919 1.45868 1.06310 1.11670 1.70434 1.17591 0.82884 0.86011 0.77716 1.90729 1.56804 1.44915 1.50138 1.22545 0.86786 0.94258 0.97289 1.68327 1.40012 1.02303 1.12775 1.24071 0.96342 0.92988 0.89592 1.23528 0.94265 1.03508 0.99120 1.22663 1.00202 0.87056 0.89680 1.20947 0.85196 1.04550 1.05207 1.68050 1.14557 1.26200 1.13303 1.42837 1.15189 1.67869 1.13173 1.18978 0.90895 1.25285 0.98289 0.91058 1.25208 0.97744 1.01592 1.00122 1.69837 1.21349 1.44959 1.27092 0.85655 0.80056 0.76502 0.80906 1.21445 1.22792 1.18854 0.93859 0.93508 0.92641 0.92464 0.89970 0.88985 0.91456 0.74428 0.77406 0.77948 0.88030 0.90825 0.86498 0.80594 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.17 71.98 0.66 -4.35 16 2 C -0.13 -3.95 5.61 30.59 0.17 -3.78 16 3 C 0.17 5.87 2.59 44.99 0.12 5.99 16 4 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 5 C 0.12 3.71 5.23 86.38 0.45 4.16 16 6 N -0.69 -24.03 5.38 -465.30 -2.50 -26.53 16 7 C 0.58 21.29 7.85 86.99 0.68 21.97 16 8 O -0.55 -22.75 16.86 -3.62 -0.06 -22.81 16 9 C 0.26 8.74 7.60 137.68 1.05 9.78 16 10 N -0.52 -15.37 9.57 -189.09 -1.81 -17.18 16 11 C 0.13 2.66 11.31 84.79 0.96 3.62 16 12 C -0.18 -2.65 9.87 22.54 0.22 -2.42 16 13 C 0.15 3.01 6.82 42.64 0.29 3.30 16 14 C -0.10 -1.13 10.22 71.24 0.73 -0.41 16 15 N -0.50 -15.42 10.07 -177.26 -1.78 -17.20 16 16 N -0.75 -32.42 4.31 -322.94 -1.39 -33.82 16 17 C -0.20 -10.72 8.22 84.03 0.69 -10.02 16 18 H 0.07 4.07 7.54 -2.91 -0.02 4.05 16 19 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 20 N -0.98 -60.92 13.97 21.65 0.30 -60.62 16 21 Si 0.94 45.53 27.74 68.60 1.90 47.43 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 24 H -0.26 -11.96 6.52 99.48 0.65 -11.31 16 25 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.05 2.02 5.97 -2.39 -0.01 2.01 16 27 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.42 15.20 7.44 -92.71 -0.69 14.51 16 33 H 0.21 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 0.49 8.10 -2.38 -0.02 0.47 16 38 H 0.36 15.92 5.66 -92.71 -0.52 15.39 16 39 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -75.31 330.98 0.94 -74.37 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.20 Total: 31.19 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 6.49 Total: 25.18 kcal Atomic # 7 Polarization: -148.17 SS G_CDS: -7.19 Total: -155.35 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Total: -75.31 0.94 -74.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698598039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.314 kcal (2) G-P(sol) polarization free energy of solvation -75.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds