Wall clock time and date at job start Tue Mar 31 2020 00:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21513 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.48136 * 119.99490 * 179.97438 * 8 7 6 11 11 C 1.40116 * 121.14182 * 179.72552 * 10 8 7 12 12 C 1.38511 * 117.81754 * 179.74246 * 11 10 8 13 13 N 1.31914 * 119.96990 * 0.53836 * 12 11 10 14 14 N 1.28270 * 122.51747 * 359.71896 * 13 12 11 15 15 C 1.31929 * 122.32942 * 359.97438 * 14 13 12 16 16 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 17 17 C 1.36935 * 120.00239 * 84.99640 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 26 26 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 27 27 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 29 29 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 31 31 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 32 32 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 33 33 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 34 34 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 35 35 H 1.07998 * 121.08925 * 359.97438 * 11 10 8 36 36 H 1.08003 * 120.01057 * 180.22972 * 12 11 10 37 37 H 1.07997 * 120.17728 * 179.97438 * 15 14 13 38 38 H 0.97004 * 119.99747 * 265.00379 * 16 4 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0426 -4.7524 1.8259 10 6 2.3964 -4.9172 3.7263 11 6 2.0875 -6.2634 3.9620 12 6 2.6836 -6.8827 5.0481 13 7 3.5033 -6.2027 5.8265 14 7 3.7861 -4.9688 5.6192 15 6 3.2772 -4.2882 4.6100 16 7 3.5050 -0.7207 1.2495 17 6 4.1892 0.3542 1.7510 18 1 3.6488 1.2015 2.1466 19 6 5.5773 0.3549 1.7508 20 7 6.2358 -0.6800 1.2736 21 14 6.5107 1.8210 2.4355 22 1 7.9708 1.5730 2.3266 23 1 6.1563 3.0384 1.6624 24 1 6.1470 2.0171 3.8618 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.4437 -2.1651 1.3387 33 1 1.8184 -2.6510 0.3178 34 1 2.7227 -2.4348 2.9848 35 1 1.4099 -6.8015 3.3158 36 1 2.4735 -7.9206 5.2605 37 1 3.5389 -3.2501 4.4685 38 1 3.9903 -1.4819 0.8944 39 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698970831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:39 Heat of formation + Delta-G solvation = 25.906962 kcal Electronic energy + Delta-G solvation = -21612.857312 eV Core-core repulsion = 18363.229221 eV Total energy + Delta-G solvation = -3249.628091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29044 -39.46856 -37.47289 -34.34858 -33.53089 -33.33444 -32.68385 -30.34970 -28.25495 -26.30154 -25.43799 -24.67204 -23.54415 -22.15654 -20.84677 -19.57654 -18.30657 -17.76927 -17.46398 -16.49125 -15.75615 -15.56544 -15.37430 -14.97184 -14.61334 -14.25415 -13.80231 -13.73270 -13.55627 -13.53706 -13.10438 -12.36244 -12.07503 -11.73555 -11.34493 -11.15213 -11.03837 -10.84654 -10.63638 -10.40061 -10.37866 -10.29164 -10.21287 -10.16351 -9.96155 -9.73591 -9.28691 -9.02774 -8.94715 -7.19170 -6.19517 -3.22818 0.17808 0.68680 2.69927 3.03630 3.46672 3.48152 3.51147 3.66308 3.90199 4.17292 4.34956 4.50821 4.57259 4.65294 5.08879 5.16930 5.19584 5.39170 5.46107 5.49381 5.62248 5.63171 5.68358 5.80912 5.90097 5.98740 6.08134 6.20490 6.27899 6.35193 6.46201 6.47037 6.67845 6.91219 7.19819 7.50038 7.70827 8.09474 8.46875 8.63531 9.06675 9.93804 10.07812 11.26919 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.005613 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.897920 B = 4987.354091 C = 6684.780509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.139 4.139 4 C 0.174 3.826 5 H 0.057 0.943 6 C 0.111 3.889 7 N -0.700 5.700 8 C 0.557 3.443 9 O -0.538 6.538 10 C -0.128 4.128 11 C -0.061 4.061 12 C 0.033 3.967 13 N -0.231 5.231 14 N -0.239 5.239 15 C 0.076 3.924 16 N -0.733 5.733 17 C -0.331 4.331 18 H 0.068 0.932 19 C -0.040 4.040 20 N -0.939 5.939 21 Si 1.074 2.926 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.294 1.294 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.162 0.838 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.367 0.633 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.866 -6.415 3.055 12.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.064 3.936 5 H 0.075 0.925 6 C -0.013 4.013 7 N -0.352 5.352 8 C 0.341 3.659 9 O -0.416 6.416 10 C -0.142 4.142 11 C -0.092 4.092 12 C -0.131 4.131 13 N -0.073 5.073 14 N -0.080 5.080 15 C -0.088 4.088 16 N -0.376 5.376 17 C -0.462 4.462 18 H 0.086 0.914 19 C -0.238 4.238 20 N -0.583 5.583 21 Si 0.905 3.095 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.222 1.222 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.180 0.820 36 H 0.196 0.804 37 H 0.196 0.804 38 H 0.201 0.799 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.964 -5.954 4.241 11.567 hybrid contribution -2.097 -0.531 -1.570 2.673 sum -11.062 -6.485 2.670 13.098 Atomic orbital electron populations 1.21948 0.96715 1.00948 1.01130 1.21712 0.93644 0.97971 0.99693 1.21811 1.04292 0.94403 0.99068 1.20505 0.85916 0.90761 0.96429 0.92536 1.21887 0.97699 0.93399 0.88331 1.45938 1.47952 1.10309 1.30986 1.17896 0.81579 0.82254 0.84124 1.90764 1.36178 1.67929 1.46705 1.21320 0.99286 0.96046 0.97596 1.22616 0.96583 0.93505 0.96447 1.24381 0.94174 1.02361 0.92163 1.72906 1.09747 1.01413 1.23251 1.73119 1.17775 1.01013 1.16088 1.24718 0.91421 1.02299 0.90405 1.42486 0.99343 1.21018 1.74746 1.19972 0.91555 0.97395 1.37280 0.91369 1.25707 0.93426 1.03661 1.01029 1.70910 1.37390 1.07007 1.43034 0.83310 0.76479 0.74144 0.75535 1.21104 1.22254 1.22184 0.93084 0.93400 0.93089 0.92021 0.89432 0.94940 0.93988 0.90931 0.91482 0.75170 0.82045 0.80397 0.80353 0.79911 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.84 37.16 0.33 -1.64 16 2 C -0.11 -1.74 2.69 -90.62 -0.24 -1.99 16 3 C -0.14 -2.41 8.26 37.16 0.31 -2.10 16 4 C 0.17 2.99 2.18 -67.93 -0.15 2.84 16 5 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 6 C 0.11 1.71 4.73 -4.04 -0.02 1.69 16 7 N -0.70 -10.53 5.35 -61.16 -0.33 -10.85 16 8 C 0.56 8.42 7.80 -12.20 -0.10 8.32 16 9 O -0.54 -9.33 16.49 5.35 0.09 -9.25 16 10 C -0.13 -1.70 5.92 -104.57 -0.62 -2.32 16 11 C -0.06 -0.68 9.77 -38.78 -0.38 -1.06 16 12 C 0.03 0.34 11.30 -17.42 -0.20 0.15 16 13 N -0.23 -3.18 11.48 30.53 0.35 -2.83 16 14 N -0.24 -3.61 11.49 30.78 0.35 -3.25 16 15 C 0.08 1.05 10.84 -16.95 -0.18 0.86 16 16 N -0.73 -15.59 4.44 -53.43 -0.24 -15.83 16 17 C -0.33 -8.08 7.57 -15.06 -0.11 -8.19 16 18 H 0.07 1.66 7.40 -52.48 -0.39 1.27 16 19 C -0.04 -1.05 5.50 -17.43 -0.10 -1.15 16 20 N -0.94 -26.95 13.70 55.49 0.76 -26.19 16 21 Si 1.07 24.32 29.92 -169.99 -5.09 19.24 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.30 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.63 6.55 -51.93 -0.34 0.29 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.04 6.71 -51.92 -0.35 0.69 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.41 6.19 6.29 -40.82 -0.26 5.93 16 35 H 0.16 1.48 7.80 -52.49 -0.41 1.08 16 36 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.18 2.28 6.53 -52.49 -0.34 1.94 16 38 H 0.37 8.38 6.63 -40.82 -0.27 8.11 16 39 H 0.25 7.21 6.77 -40.82 -0.28 6.94 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -30.17 325.28 -5.77 -35.95 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.12 Total: 12.70 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.46 Total: -4.58 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.90 Total: -58.96 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.09 Total: 19.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.17 -5.77 -35.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698970831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.854 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds