Wall clock time and date at job start Tue Mar 31 2020 00:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21513 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.48136 * 119.99490 * 179.97438 * 8 7 6 11 11 C 1.40116 * 121.14182 * 179.72552 * 10 8 7 12 12 C 1.38511 * 117.81754 * 179.74246 * 11 10 8 13 13 N 1.31914 * 119.96990 * 0.53836 * 12 11 10 14 14 N 1.28270 * 122.51747 * 359.71896 * 13 12 11 15 15 C 1.31929 * 122.32942 * 359.97438 * 14 13 12 16 16 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 17 17 C 1.36935 * 120.00239 * 84.99640 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 26 26 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 27 27 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 29 29 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 31 31 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 32 32 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 33 33 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 34 34 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 35 35 H 1.07998 * 121.08925 * 359.97438 * 11 10 8 36 36 H 1.08003 * 120.01057 * 180.22972 * 12 11 10 37 37 H 1.07997 * 120.17728 * 179.97438 * 15 14 13 38 38 H 0.97004 * 119.99747 * 265.00379 * 16 4 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0426 -4.7524 1.8259 10 6 2.3964 -4.9172 3.7263 11 6 2.0875 -6.2634 3.9620 12 6 2.6836 -6.8827 5.0481 13 7 3.5033 -6.2027 5.8265 14 7 3.7861 -4.9688 5.6192 15 6 3.2772 -4.2882 4.6100 16 7 3.5050 -0.7207 1.2495 17 6 4.1892 0.3542 1.7510 18 1 3.6488 1.2015 2.1466 19 6 5.5773 0.3549 1.7508 20 7 6.2358 -0.6800 1.2736 21 14 6.5107 1.8210 2.4355 22 1 7.9708 1.5730 2.3266 23 1 6.1563 3.0384 1.6624 24 1 6.1470 2.0171 3.8618 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.4437 -2.1651 1.3387 33 1 1.8184 -2.6510 0.3178 34 1 2.7227 -2.4348 2.9848 35 1 1.4099 -6.8015 3.3158 36 1 2.4735 -7.9206 5.2605 37 1 3.5389 -3.2501 4.4685 38 1 3.9903 -1.4819 0.8944 39 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698970831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:38 Heat of formation + Delta-G solvation = 4.784473 kcal Electronic energy + Delta-G solvation = -21613.773252 eV Core-core repulsion = 18363.229221 eV Total energy + Delta-G solvation = -3250.544031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.31345 -40.68627 -38.90517 -35.66073 -35.23883 -34.35997 -33.68475 -32.00836 -29.69132 -27.54421 -26.64701 -25.70619 -25.25389 -23.54709 -22.05093 -20.90543 -19.62778 -19.17357 -18.79677 -17.47497 -17.03013 -16.81832 -16.61743 -16.25354 -15.94775 -15.67011 -15.44011 -15.04469 -14.89095 -14.53884 -14.37783 -13.69198 -13.55209 -12.90496 -12.83783 -12.67646 -12.49701 -12.13467 -12.00766 -11.93463 -11.65615 -11.55314 -11.49315 -11.40734 -11.28532 -11.16777 -10.85993 -10.76619 -10.22969 -9.05770 -8.25473 -5.21922 -0.83168 -0.24357 1.55980 1.62809 1.69909 1.85313 1.87505 2.49701 2.75181 2.96706 3.14907 3.42441 3.45186 3.49746 3.70874 3.76226 3.80316 4.20550 4.22652 4.30034 4.36025 4.47070 4.58027 4.66406 4.68565 4.85727 4.90448 4.97701 5.04020 5.09638 5.17794 5.21847 5.37975 5.57130 5.70234 5.74773 6.26965 6.59390 6.87521 7.14976 7.48651 8.05121 8.16966 9.24743 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.005613 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.897920 B = 4987.354091 C = 6684.780509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.175 3.825 5 H 0.057 0.943 6 C 0.120 3.880 7 N -0.701 5.701 8 C 0.562 3.438 9 O -0.560 6.560 10 C -0.142 4.142 11 C -0.047 4.047 12 C 0.049 3.951 13 N -0.256 5.256 14 N -0.271 5.271 15 C 0.073 3.927 16 N -0.739 5.739 17 C -0.302 4.302 18 H 0.071 0.929 19 C -0.101 4.101 20 N -0.980 5.980 21 Si 1.114 2.886 22 H -0.303 1.303 23 H -0.282 1.282 24 H -0.279 1.279 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.410 0.590 35 H 0.185 0.815 36 H 0.226 0.774 37 H 0.178 0.822 38 H 0.358 0.642 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.004 -6.884 3.362 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.067 3.933 5 H 0.075 0.925 6 C -0.004 4.004 7 N -0.352 5.352 8 C 0.347 3.653 9 O -0.440 6.440 10 C -0.156 4.156 11 C -0.077 4.077 12 C -0.115 4.115 13 N -0.098 5.098 14 N -0.111 5.111 15 C -0.093 4.093 16 N -0.381 5.381 17 C -0.434 4.434 18 H 0.089 0.911 19 C -0.292 4.292 20 N -0.628 5.628 21 Si 0.941 3.059 22 H -0.230 1.230 23 H -0.209 1.209 24 H -0.205 1.205 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.203 0.797 36 H 0.242 0.758 37 H 0.195 0.805 38 H 0.190 0.810 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.154 -6.398 4.569 13.646 hybrid contribution -1.566 -0.442 -1.693 2.348 sum -12.720 -6.839 2.876 14.725 Atomic orbital electron populations 1.21859 0.93713 1.02071 1.02239 1.21613 0.96085 0.96730 0.98268 1.21722 1.01590 0.95593 1.00239 1.20653 0.83442 0.92245 0.96986 0.92482 1.21775 0.98581 0.91929 0.88148 1.45934 1.47900 1.10577 1.30791 1.18073 0.81028 0.81981 0.84198 1.90747 1.37309 1.68280 1.47673 1.21223 1.00024 0.97142 0.97226 1.22976 0.95887 0.92436 0.96421 1.25063 0.92002 1.03848 0.90624 1.72819 1.11139 1.01189 1.24610 1.73060 1.19007 1.02035 1.16974 1.24689 0.91709 1.02383 0.90510 1.42593 1.01133 1.19911 1.74445 1.20180 0.91449 0.97510 1.34251 0.91061 1.26733 0.95079 1.05052 1.02379 1.71006 1.37662 1.07913 1.46268 0.82768 0.74483 0.72532 0.76075 1.22977 1.20899 1.20491 0.92228 0.92074 0.91991 0.93116 0.93388 0.93077 0.93547 0.89060 0.92430 0.75258 0.79742 0.75785 0.80477 0.80951 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.84 71.98 0.64 -2.65 16 2 C -0.11 -3.23 2.69 -10.79 -0.03 -3.26 16 3 C -0.13 -4.48 8.26 71.98 0.59 -3.89 16 4 C 0.18 5.85 2.18 44.99 0.10 5.95 16 5 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 6 C 0.12 3.55 4.73 86.38 0.41 3.96 16 7 N -0.70 -20.74 5.35 -465.70 -2.49 -23.23 16 8 C 0.56 16.47 7.80 86.87 0.68 17.15 16 9 O -0.56 -18.66 16.49 -3.75 -0.06 -18.72 16 10 C -0.14 -3.63 5.92 -19.83 -0.12 -3.75 16 11 C -0.05 -0.92 9.77 22.79 0.22 -0.70 16 12 C 0.05 0.88 11.30 84.75 0.96 1.84 16 13 N -0.26 -6.74 11.48 -57.33 -0.66 -7.40 16 14 N -0.27 -8.16 11.49 -56.53 -0.65 -8.81 16 15 C 0.07 2.00 10.84 85.04 0.92 2.92 16 16 N -0.74 -31.67 4.44 -322.95 -1.43 -33.11 16 17 C -0.30 -14.80 7.57 84.03 0.64 -14.16 16 18 H 0.07 3.41 7.40 -2.91 -0.02 3.39 16 19 C -0.10 -5.39 5.50 84.86 0.47 -4.93 16 20 N -0.98 -57.88 13.70 21.65 0.30 -57.58 16 21 Si 1.11 49.62 29.92 68.60 2.05 51.67 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.06 1.32 6.55 -2.39 -0.02 1.31 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.98 6.01 -2.39 -0.01 1.97 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 2.40 6.71 -2.38 -0.02 2.39 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.41 12.41 6.29 -92.71 -0.58 11.82 16 35 H 0.19 2.76 7.80 -2.91 -0.02 2.74 16 36 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.18 4.70 6.53 -2.91 -0.02 4.68 16 38 H 0.36 16.78 6.63 -92.71 -0.61 16.16 16 39 H 0.24 14.33 6.77 -92.71 -0.63 13.70 16 Total: -1.00 -66.04 325.28 2.56 -63.48 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.03 Total: 35.21 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.47 Total: -1.52 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -4.94 Total: -130.13 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.06 Total: -18.72 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.67 kcal Total: -66.04 2.56 -63.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698970831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.265 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds