Wall clock time and date at job start Tue Mar 31 2020 00:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47034 * 2 1 4 4 C 1.53006 * 109.47104 * 119.99338 * 2 1 3 5 5 H 1.08994 * 109.47567 * 300.00472 * 4 2 1 6 6 C 1.52995 * 109.47104 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21523 * 119.99957 * 0.02562 * 8 7 6 10 10 C 1.48132 * 120.00296 * 180.02562 * 8 7 6 11 11 C 1.40111 * 121.14635 * 179.72283 * 10 8 7 12 12 C 1.38508 * 117.82342 * 179.73869 * 11 10 8 13 13 N 1.31921 * 119.96683 * 0.54166 * 12 11 10 14 14 N 1.28279 * 122.51605 * 359.71967 * 13 12 11 15 15 C 1.31921 * 122.32467 * 359.97438 * 14 13 12 16 16 N 1.46505 * 109.46692 * 60.00395 * 4 2 1 17 17 C 1.36931 * 119.99788 * 274.99780 * 16 4 2 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 4 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 4 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 H 1.09002 * 109.47452 * 300.00278 * 1 2 3 26 26 H 1.09001 * 109.46956 * 60.00206 * 1 2 3 27 27 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47294 * 239.99977 * 2 1 3 29 29 H 1.08995 * 109.46796 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46647 * 300.00002 * 3 2 1 31 31 H 1.08999 * 109.47000 * 60.00316 * 3 2 1 32 32 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 33 33 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 34 34 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 35 35 H 1.07996 * 121.09078 * 359.97438 * 11 10 8 36 36 H 1.07996 * 120.01856 * 180.23500 * 12 11 10 37 37 H 1.08003 * 120.17277 * 179.97438 * 15 14 13 38 38 H 0.97000 * 119.99792 * 94.99575 * 16 4 2 39 39 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 7 4.0583 -1.5139 2.3805 8 6 5.3832 -1.6552 2.5823 9 8 6.1730 -1.1250 1.8260 10 6 5.8770 -2.4566 3.7261 11 6 7.2491 -2.6240 3.9550 12 6 7.6343 -3.3826 5.0480 13 7 6.7198 -3.9283 5.8266 14 7 5.4622 -3.7834 5.6194 15 6 4.9904 -3.0761 4.6107 16 7 1.5516 -2.1024 1.2494 17 6 0.3101 -2.3896 1.7505 18 1 -0.3093 -1.5979 2.1454 19 6 -0.1549 -3.6976 1.7453 20 7 0.5998 -4.6623 1.2636 21 14 -1.8517 -4.0883 2.4219 22 1 -2.4937 -2.8377 2.9006 23 1 -2.6838 -4.6943 1.3516 24 1 -1.7260 -5.0436 3.5519 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.9329 -1.1563 0.3177 33 1 3.9337 0.3019 1.3384 34 1 3.4279 -1.9367 2.9844 35 1 7.9824 -2.1731 3.3029 36 1 8.6828 -3.5314 5.2599 37 1 3.9243 -2.9773 4.4687 38 1 2.1078 -2.8134 0.8944 39 1 0.2749 -5.5764 1.2603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698970836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:43 Heat of formation + Delta-G solvation = 24.979068 kcal Electronic energy + Delta-G solvation = -21564.748984 eV Core-core repulsion = 18315.080656 eV Total energy + Delta-G solvation = -3249.668328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.23458 -39.38570 -37.35662 -34.25909 -33.28940 -33.19303 -32.63048 -30.47065 -28.32680 -26.28064 -25.47943 -24.63715 -23.64912 -21.99451 -20.75047 -19.50219 -18.27701 -17.71341 -17.17252 -16.41336 -15.66316 -15.53540 -15.23270 -15.07531 -14.52974 -14.03059 -13.82679 -13.57810 -13.49442 -13.37645 -12.91734 -12.32326 -12.09899 -11.69423 -11.18606 -11.10398 -11.02350 -10.88321 -10.77005 -10.44630 -10.34816 -10.32303 -10.23813 -10.14421 -10.02860 -9.68499 -9.61573 -9.00954 -8.87214 -7.11943 -5.89204 -3.19297 0.23409 0.73726 2.76816 3.11880 3.36100 3.42554 3.44994 3.56956 3.95120 4.23197 4.40322 4.47897 4.58697 4.70467 5.15214 5.24545 5.27597 5.44215 5.51394 5.55206 5.66652 5.67809 5.78032 5.89015 5.95332 6.08426 6.15656 6.29019 6.34023 6.43534 6.53057 6.53869 6.74671 6.98580 7.23333 7.59215 7.61037 8.18043 8.27692 8.51521 9.40168 9.92979 10.28777 11.32328 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.005600 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.839116 B = 4999.183573 C = 6704.092389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.150 4.150 4 C 0.169 3.831 5 H 0.056 0.944 6 C 0.112 3.888 7 N -0.698 5.698 8 C 0.557 3.443 9 O -0.539 6.539 10 C -0.127 4.127 11 C -0.062 4.062 12 C 0.033 3.967 13 N -0.232 5.232 14 N -0.240 5.240 15 C 0.077 3.923 16 N -0.722 5.722 17 C -0.241 4.241 18 H 0.074 0.926 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.411 0.589 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.385 0.615 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.818 7.733 2.884 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.208 4.208 4 C 0.058 3.942 5 H 0.074 0.926 6 C -0.012 4.012 7 N -0.349 5.349 8 C 0.341 3.659 9 O -0.418 6.418 10 C -0.141 4.141 11 C -0.092 4.092 12 C -0.132 4.132 13 N -0.074 5.074 14 N -0.081 5.081 15 C -0.088 4.088 16 N -0.364 5.364 17 C -0.372 4.372 18 H 0.092 0.908 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.733 3.267 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.249 0.751 35 H 0.179 0.821 36 H 0.195 0.805 37 H 0.198 0.802 38 H 0.219 0.781 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.822 7.164 3.758 12.724 hybrid contribution -0.826 0.133 -0.947 1.264 sum 8.996 7.297 2.812 11.919 Atomic orbital electron populations 1.21819 0.94827 1.03963 0.99067 1.21728 0.97026 0.94391 0.99927 1.21951 1.00434 0.97336 1.01037 1.20572 0.88964 0.88370 0.96292 0.92648 1.21868 0.96063 0.94844 0.88411 1.45921 1.06033 1.52029 1.30957 1.17877 0.83145 0.80757 0.84090 1.90763 1.55536 1.48691 1.46766 1.21330 0.95334 0.99834 0.97604 1.22608 0.95818 0.94307 0.96484 1.24366 1.02129 0.94487 0.92170 1.72903 0.96547 1.14585 1.23412 1.73110 1.06745 1.12128 1.16151 1.24733 1.02439 0.91268 0.90328 1.42486 1.18233 1.01756 1.73912 1.19230 0.92768 0.92455 1.32705 0.90764 1.24738 0.98302 0.95894 1.01572 1.69661 1.36774 0.99971 1.51101 0.86205 0.84221 0.78006 0.78267 1.20507 1.21906 1.21810 0.94020 0.94941 0.89459 0.91831 0.93072 0.93487 0.93145 0.91378 0.91069 0.75096 0.82077 0.80473 0.80234 0.78115 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.26 37.16 0.31 -2.07 16 2 C -0.11 -1.73 2.69 -90.61 -0.24 -1.98 16 3 C -0.15 -1.95 8.84 37.16 0.33 -1.62 16 4 C 0.17 2.86 2.18 -67.93 -0.15 2.71 16 5 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.72 4.73 -4.04 -0.02 1.70 16 7 N -0.70 -10.52 5.35 -61.16 -0.33 -10.85 16 8 C 0.56 8.47 7.80 -12.20 -0.10 8.37 16 9 O -0.54 -9.42 16.49 5.35 0.09 -9.33 16 10 C -0.13 -1.69 5.92 -104.58 -0.62 -2.31 16 11 C -0.06 -0.69 9.77 -38.78 -0.38 -1.07 16 12 C 0.03 0.34 11.30 -17.41 -0.20 0.14 16 13 N -0.23 -3.22 11.48 30.53 0.35 -2.86 16 14 N -0.24 -3.64 11.49 30.78 0.35 -3.29 16 15 C 0.08 1.06 10.84 -16.96 -0.18 0.87 16 16 N -0.72 -15.36 4.44 -53.42 -0.24 -15.60 16 17 C -0.24 -5.79 7.57 -15.06 -0.11 -5.91 16 18 H 0.07 1.76 7.39 -52.49 -0.39 1.37 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -25.85 13.06 55.49 0.72 -25.12 16 21 Si 0.90 20.96 29.55 -169.99 -5.02 15.94 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 1.78 6.01 -51.93 -0.31 1.47 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.62 6.54 -51.93 -0.34 0.28 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 34 H 0.41 6.19 6.29 -40.82 -0.26 5.93 16 35 H 0.16 1.50 7.80 -52.49 -0.41 1.09 16 36 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.18 2.29 6.53 -52.48 -0.34 1.94 16 38 H 0.38 9.04 7.80 -40.82 -0.32 8.73 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -29.35 326.97 -5.83 -35.19 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.23 Total: 12.46 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.46 Total: -1.46 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.86 Total: -57.72 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.35 -5.83 -35.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698970836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.165 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds