Wall clock time and date at job start Tue Mar 31 2020 00:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47034 * 2 1 4 4 C 1.53006 * 109.47104 * 119.99338 * 2 1 3 5 5 H 1.08994 * 109.47567 * 300.00472 * 4 2 1 6 6 C 1.52995 * 109.47104 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21523 * 119.99957 * 0.02562 * 8 7 6 10 10 C 1.48132 * 120.00296 * 180.02562 * 8 7 6 11 11 C 1.40111 * 121.14635 * 179.72283 * 10 8 7 12 12 C 1.38508 * 117.82342 * 179.73869 * 11 10 8 13 13 N 1.31921 * 119.96683 * 0.54166 * 12 11 10 14 14 N 1.28279 * 122.51605 * 359.71967 * 13 12 11 15 15 C 1.31921 * 122.32467 * 359.97438 * 14 13 12 16 16 N 1.46505 * 109.46692 * 60.00395 * 4 2 1 17 17 C 1.36931 * 119.99788 * 274.99780 * 16 4 2 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 4 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 4 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 H 1.09002 * 109.47452 * 300.00278 * 1 2 3 26 26 H 1.09001 * 109.46956 * 60.00206 * 1 2 3 27 27 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47294 * 239.99977 * 2 1 3 29 29 H 1.08995 * 109.46796 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46647 * 300.00002 * 3 2 1 31 31 H 1.08999 * 109.47000 * 60.00316 * 3 2 1 32 32 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 33 33 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 34 34 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 35 35 H 1.07996 * 121.09078 * 359.97438 * 11 10 8 36 36 H 1.07996 * 120.01856 * 180.23500 * 12 11 10 37 37 H 1.08003 * 120.17277 * 179.97438 * 15 14 13 38 38 H 0.97000 * 119.99792 * 94.99575 * 16 4 2 39 39 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 7 4.0583 -1.5139 2.3805 8 6 5.3832 -1.6552 2.5823 9 8 6.1730 -1.1250 1.8260 10 6 5.8770 -2.4566 3.7261 11 6 7.2491 -2.6240 3.9550 12 6 7.6343 -3.3826 5.0480 13 7 6.7198 -3.9283 5.8266 14 7 5.4622 -3.7834 5.6194 15 6 4.9904 -3.0761 4.6107 16 7 1.5516 -2.1024 1.2494 17 6 0.3101 -2.3896 1.7505 18 1 -0.3093 -1.5979 2.1454 19 6 -0.1549 -3.6976 1.7453 20 7 0.5998 -4.6623 1.2636 21 14 -1.8517 -4.0883 2.4219 22 1 -2.4937 -2.8377 2.9006 23 1 -2.6838 -4.6943 1.3516 24 1 -1.7260 -5.0436 3.5519 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.9329 -1.1563 0.3177 33 1 3.9337 0.3019 1.3384 34 1 3.4279 -1.9367 2.9844 35 1 7.9824 -2.1731 3.3029 36 1 8.6828 -3.5314 5.2599 37 1 3.9243 -2.9773 4.4687 38 1 2.1078 -2.8134 0.8944 39 1 0.2749 -5.5764 1.2603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698970836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:41 Heat of formation + Delta-G solvation = 4.499599 kcal Electronic energy + Delta-G solvation = -21565.637041 eV Core-core repulsion = 18315.080656 eV Total energy + Delta-G solvation = -3250.556384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.25962 -40.60338 -38.76710 -35.53357 -34.92765 -34.30569 -33.63584 -32.15096 -29.74287 -27.51275 -26.71106 -25.68369 -25.23922 -23.37339 -21.95867 -20.82826 -19.58687 -18.85538 -18.72715 -17.39665 -17.02670 -16.82867 -16.48206 -16.24394 -15.83139 -15.54127 -15.17889 -14.94714 -14.82970 -14.48861 -14.23872 -13.80862 -13.42094 -12.90000 -12.88216 -12.71436 -12.46250 -12.28455 -12.07894 -11.96089 -11.80724 -11.58345 -11.40493 -11.35524 -11.27867 -11.23986 -10.86016 -10.73320 -10.13448 -8.95674 -7.87829 -5.14318 -0.77980 -0.19663 1.49384 1.52688 1.59302 1.62736 1.95921 2.54804 2.60032 3.01565 3.21128 3.45157 3.50352 3.51996 3.80850 3.87019 3.92036 4.29662 4.32252 4.35316 4.46356 4.53068 4.66728 4.73687 4.77591 4.94123 4.98757 5.06531 5.08735 5.17163 5.26185 5.30330 5.46264 5.62265 5.67331 5.78729 6.32655 6.36299 6.96243 7.41438 7.52906 8.12346 8.36730 9.34921 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.005600 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.839116 B = 4999.183573 C = 6704.092389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.170 3.830 5 H 0.060 0.940 6 C 0.120 3.880 7 N -0.699 5.699 8 C 0.561 3.439 9 O -0.562 6.562 10 C -0.141 4.141 11 C -0.048 4.048 12 C 0.048 3.952 13 N -0.258 5.258 14 N -0.272 5.272 15 C 0.074 3.926 16 N -0.728 5.728 17 C -0.212 4.212 18 H 0.081 0.919 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.304 1.304 24 H -0.301 1.301 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.411 0.589 35 H 0.185 0.815 36 H 0.225 0.775 37 H 0.181 0.819 38 H 0.373 0.627 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.046 9.658 3.167 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.061 3.939 5 H 0.078 0.922 6 C -0.004 4.004 7 N -0.350 5.350 8 C 0.347 3.653 9 O -0.442 6.442 10 C -0.155 4.155 11 C -0.078 4.078 12 C -0.116 4.116 13 N -0.099 5.099 14 N -0.112 5.112 15 C -0.092 4.092 16 N -0.368 5.368 17 C -0.344 4.344 18 H 0.098 0.902 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.785 3.215 22 H -0.190 1.190 23 H -0.232 1.232 24 H -0.229 1.229 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.249 0.751 35 H 0.202 0.798 36 H 0.241 0.759 37 H 0.197 0.803 38 H 0.205 0.795 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.032 9.144 4.067 14.894 hybrid contribution -1.108 -0.353 -1.062 1.575 sum 9.924 8.791 3.005 13.594 Atomic orbital electron populations 1.21740 0.95568 1.01737 1.00266 1.21622 0.96291 0.96356 0.98459 1.21862 1.01052 0.94851 1.02154 1.20731 0.90063 0.86094 0.97018 0.92198 1.21768 0.94633 0.95824 0.88141 1.45922 1.06272 1.51988 1.30777 1.18055 0.82761 0.80353 0.84162 1.90745 1.55924 1.49818 1.47747 1.21236 0.96497 1.00503 0.97244 1.22964 0.95132 0.93246 0.96500 1.25041 1.03520 0.92419 0.90653 1.72816 0.96580 1.15739 1.24756 1.73052 1.07859 1.13243 1.17042 1.24718 1.02649 0.91424 0.90398 1.42594 1.17283 1.03402 1.73480 1.19492 0.93208 0.92029 1.29622 0.90152 1.25304 1.00971 0.96337 1.03580 1.69792 1.38169 0.99740 1.54024 0.85358 0.81393 0.77832 0.76928 1.18990 1.23158 1.22852 0.93457 0.93157 0.93239 0.93014 0.92042 0.92225 0.92214 0.92479 0.89140 0.75133 0.79816 0.75898 0.80256 0.79530 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 8.26 71.98 0.59 -3.82 16 2 C -0.11 -3.18 2.69 -10.79 -0.03 -3.21 16 3 C -0.14 -3.23 8.84 71.99 0.64 -2.60 16 4 C 0.17 5.55 2.18 44.99 0.10 5.65 16 5 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 6 C 0.12 3.54 4.73 86.38 0.41 3.95 16 7 N -0.70 -20.61 5.35 -465.70 -2.49 -23.10 16 8 C 0.56 16.51 7.80 86.87 0.68 17.19 16 9 O -0.56 -18.82 16.49 -3.79 -0.06 -18.88 16 10 C -0.14 -3.61 5.92 -19.83 -0.12 -3.73 16 11 C -0.05 -0.96 9.77 22.79 0.22 -0.73 16 12 C 0.05 0.87 11.30 84.74 0.96 1.83 16 13 N -0.26 -6.81 11.48 -57.33 -0.66 -7.47 16 14 N -0.27 -8.19 11.49 -56.53 -0.65 -8.84 16 15 C 0.07 2.02 10.84 85.04 0.92 2.95 16 16 N -0.73 -30.97 4.44 -322.93 -1.43 -32.40 16 17 C -0.21 -10.17 7.57 84.04 0.64 -9.53 16 18 H 0.08 3.73 7.39 -2.91 -0.02 3.71 16 19 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 20 N -0.97 -55.36 13.06 21.65 0.28 -55.07 16 21 Si 0.95 43.78 29.55 68.60 2.03 45.80 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.99 6.01 -2.39 -0.01 1.97 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.29 6.54 -2.39 -0.02 1.28 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.09 2.35 6.71 -2.39 -0.02 2.34 16 34 H 0.41 12.32 6.29 -92.71 -0.58 11.73 16 35 H 0.18 2.80 7.80 -2.91 -0.02 2.78 16 36 H 0.22 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.18 4.71 6.53 -2.91 -0.02 4.69 16 38 H 0.37 17.82 7.80 -92.71 -0.72 17.09 16 39 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -63.90 326.97 2.27 -61.64 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: -0.22 Total: 33.59 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 5.47 Total: 4.74 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -4.95 Total: -126.89 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.06 Total: -18.88 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.90 2.27 -61.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698970836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.137 kcal (2) G-P(sol) polarization free energy of solvation -63.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds