Wall clock time and date at job start Tue Mar 31 2020 00:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47208 * 2 1 4 4 N 1.32163 * 120.53838 * 264.10214 * 3 2 1 5 5 C 1.31846 * 120.96774 * 180.02562 * 4 3 2 6 6 N 1.31880 * 122.09924 * 0.02562 * 5 4 3 7 7 C 1.32137 * 120.96647 * 359.97438 * 6 5 4 8 8 C 1.39930 * 120.53789 * 84.13086 * 3 2 1 9 9 C 1.47828 * 120.93755 * 359.70137 * 8 3 2 10 10 O 1.21555 * 120.00105 * 354.44311 * 9 8 3 11 11 N 1.34776 * 119.99847 * 174.44514 * 9 8 3 12 12 C 1.46499 * 120.00024 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47018 * 34.99681 * 12 11 9 14 14 C 1.53003 * 109.47297 * 275.00113 * 12 11 9 15 15 C 1.53001 * 109.47413 * 154.99918 * 12 11 9 16 16 N 1.46502 * 109.46925 * 305.00513 * 15 12 11 17 17 C 1.36938 * 120.00094 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99411 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00021 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99746 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00173 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.46925 * 89.99813 * 21 19 17 23 23 H 1.48496 * 109.47161 * 210.00136 * 21 19 17 24 24 H 1.48506 * 109.46793 * 330.00099 * 21 19 17 25 25 H 1.09007 * 109.47112 * 59.99835 * 1 2 3 26 26 H 1.09001 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47412 * 300.00506 * 1 2 3 28 28 H 1.09000 * 109.47113 * 239.99462 * 2 1 3 29 29 H 1.09003 * 109.46664 * 119.99979 * 2 1 3 30 30 H 1.08003 * 118.95183 * 179.97438 * 5 4 3 31 31 H 1.07996 * 120.54263 * 180.02562 * 7 6 5 32 32 H 0.96995 * 119.99893 * 0.02562 * 11 9 8 33 33 H 1.08997 * 109.47256 * 59.99716 * 14 12 11 34 34 H 1.09001 * 109.46990 * 179.97438 * 14 12 11 35 35 H 1.09000 * 109.46733 * 299.99742 * 14 12 11 36 36 H 1.09002 * 109.46855 * 65.00015 * 15 12 11 37 37 H 1.08995 * 109.47585 * 184.99870 * 15 12 11 38 38 H 0.96996 * 119.99802 * 359.97438 * 16 15 12 39 39 H 0.96998 * 119.99810 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3665 2.0149 -1.1323 5 6 2.8074 3.2574 -1.1421 6 7 2.9370 3.9638 -0.0359 7 6 2.6259 3.4483 1.1403 8 6 2.1531 2.1322 1.1989 9 6 1.7864 1.5131 2.4902 10 8 1.2789 0.4088 2.5125 11 7 2.0147 2.1732 3.6429 12 6 1.6508 1.5600 4.9226 13 1 1.8099 0.4830 4.8677 14 6 0.1775 1.8430 5.2232 15 6 2.5204 2.1480 6.0357 16 7 3.9343 1.9824 5.6896 17 6 4.9055 2.4364 6.5417 18 1 4.6290 2.9167 7.4686 19 6 6.2451 2.2790 6.2140 20 7 7.1785 2.7158 7.0328 21 14 6.7233 1.4474 4.6111 22 1 6.8373 2.4683 3.5387 23 1 8.0283 0.7594 4.7804 24 1 5.6841 0.4535 4.2399 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.0716 3.7110 -2.0859 31 1 2.7344 4.0330 2.0418 32 1 2.4192 3.0546 3.6251 33 1 -0.4421 1.4241 4.4303 34 1 -0.0934 1.3863 6.1751 35 1 0.0183 2.9199 5.2781 36 1 2.2961 3.2085 6.1500 37 1 2.3123 1.6297 6.9716 38 1 4.1825 1.5513 4.8569 39 1 8.1147 2.6055 6.8040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699390833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:36 Heat of formation + Delta-G solvation = 21.601774 kcal Electronic energy + Delta-G solvation = -21892.931870 eV Core-core repulsion = 18643.117092 eV Total energy + Delta-G solvation = -3249.814778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52484 -39.51446 -36.65635 -35.14499 -33.84433 -33.21688 -31.88027 -30.96521 -30.01109 -26.11488 -25.54966 -25.15675 -22.52190 -22.08098 -21.46074 -20.51916 -18.24044 -18.01336 -17.36107 -16.93372 -16.01639 -15.51908 -14.84676 -14.72187 -14.32617 -14.28140 -14.05311 -14.03872 -13.49444 -12.93576 -12.75211 -12.65751 -12.47447 -12.36983 -11.97417 -11.83488 -11.67134 -11.26635 -11.05852 -10.94052 -10.80029 -10.60038 -10.23241 -9.84143 -9.73447 -9.68493 -9.49779 -9.04728 -8.95920 -7.35193 -5.85583 -3.22341 0.24632 0.79530 2.75310 3.06478 3.29834 3.33979 3.39380 3.59069 3.76551 3.84050 4.12636 4.50743 4.52469 4.66545 4.95274 5.04767 5.12730 5.24100 5.26817 5.33465 5.40503 5.48154 5.59005 5.72703 5.80004 5.86395 5.93508 5.97980 6.09957 6.16638 6.20356 6.29988 6.48685 6.66690 6.68712 7.46830 7.77612 7.89092 8.13313 8.33064 9.11074 9.83303 10.01890 11.32524 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.005842 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.349229 B = 4792.005781 C = 5663.889231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C 0.237 3.763 4 N -0.525 5.525 5 C 0.314 3.686 6 N -0.526 5.526 7 C 0.187 3.813 8 C -0.242 4.242 9 C 0.566 3.434 10 O -0.526 6.526 11 N -0.708 5.708 12 C 0.131 3.869 13 H 0.091 0.909 14 C -0.157 4.157 15 C 0.148 3.852 16 N -0.756 5.756 17 C -0.249 4.249 18 H 0.092 0.908 19 C 0.010 3.990 20 N -0.930 5.930 21 Si 0.879 3.121 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.201 0.799 31 H 0.174 0.826 32 H 0.402 0.598 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.035 0.965 37 H 0.045 0.955 38 H 0.362 0.638 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 -0.815 -13.839 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 C 0.090 3.910 4 N -0.239 5.239 5 C 0.027 3.973 6 N -0.239 5.239 7 C 0.020 3.980 8 C -0.250 4.250 9 C 0.352 3.648 10 O -0.404 6.404 11 N -0.359 5.359 12 C 0.026 3.974 13 H 0.109 0.891 14 C -0.216 4.216 15 C 0.020 3.980 16 N -0.402 5.402 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.187 4.187 20 N -0.578 5.578 21 Si 0.709 3.291 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.204 1.204 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.131 0.869 30 H 0.217 0.783 31 H 0.191 0.809 32 H 0.238 0.762 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.195 0.805 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.473 -1.073 -14.460 20.487 hybrid contribution 0.709 -0.304 -0.345 0.845 sum -13.764 -1.377 -14.806 20.262 Atomic orbital electron populations 1.21547 0.93143 1.02458 1.01684 1.20844 0.97429 0.88945 1.04931 1.22021 0.85921 0.96579 0.86453 1.68400 1.13876 1.12025 1.29642 1.25231 0.88366 0.86439 0.97221 1.68459 1.17744 1.38612 0.99112 1.23565 0.86591 0.91085 0.96726 1.21693 1.08732 0.97915 0.96615 1.17720 0.78788 0.85206 0.83104 1.90719 1.43634 1.19125 1.86925 1.46001 1.62596 1.21600 1.05719 1.21388 0.94507 0.99252 0.82203 0.89099 1.22091 0.95421 1.01971 1.02111 1.20987 0.84192 0.98306 0.94491 1.42712 1.00900 1.72816 1.23756 1.19037 0.85626 1.31788 1.01367 0.89023 1.24645 0.95598 1.00635 0.97783 1.69689 0.99761 1.51509 1.36814 0.86645 0.77981 0.79720 0.84783 1.21060 1.21506 1.20408 0.93375 0.91665 0.91801 0.90252 0.86922 0.78258 0.80944 0.76187 0.92284 0.91265 0.92340 0.94765 0.93767 0.80517 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.51 37.16 0.35 -1.06 16 2 C -0.08 -1.01 5.49 -27.89 -0.15 -1.16 16 3 C 0.24 3.14 6.12 -81.82 -0.50 2.64 16 4 N -0.53 -6.67 10.36 -10.48 -0.11 -6.78 16 5 C 0.31 3.56 12.27 -92.04 -1.13 2.43 16 6 N -0.53 -6.61 10.42 -14.25 -0.15 -6.76 16 7 C 0.19 2.32 10.80 -16.77 -0.18 2.14 16 8 C -0.24 -3.24 5.91 -104.69 -0.62 -3.85 16 9 C 0.57 8.11 7.69 -12.34 -0.09 8.02 16 10 O -0.53 -8.28 11.70 5.32 0.06 -8.22 16 11 N -0.71 -9.73 4.47 -54.75 -0.24 -9.98 16 12 C 0.13 1.88 2.73 -67.93 -0.19 1.69 16 13 H 0.09 1.46 7.58 -51.93 -0.39 1.06 16 14 C -0.16 -1.81 9.48 37.16 0.35 -1.46 16 15 C 0.15 2.56 5.82 -4.04 -0.02 2.53 16 16 N -0.76 -16.88 5.24 -59.91 -0.31 -17.19 16 17 C -0.25 -6.76 10.47 -15.06 -0.16 -6.92 16 18 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -28.70 13.97 55.49 0.78 -27.93 16 21 Si 0.88 21.98 27.74 -169.99 -4.71 17.26 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.78 6.90 -51.93 -0.36 0.42 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.11 1.53 5.93 -51.93 -0.31 1.22 16 30 H 0.20 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.17 1.75 6.58 -52.49 -0.35 1.41 16 32 H 0.40 5.10 6.77 -40.82 -0.28 4.82 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.36 8.13 5.20 -40.82 -0.21 7.92 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -32.45 324.95 -7.52 -39.97 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.29 Total: 9.57 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.43 Total: 5.17 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -0.04 Total: -68.64 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.06 Total: -8.22 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.45 -7.52 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699390833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.568 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds