Wall clock time and date at job start Tue Mar 31 2020 00:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47208 * 2 1 4 4 N 1.32163 * 120.53838 * 264.10214 * 3 2 1 5 5 C 1.31846 * 120.96774 * 180.02562 * 4 3 2 6 6 N 1.31880 * 122.09924 * 0.02562 * 5 4 3 7 7 C 1.32137 * 120.96647 * 359.97438 * 6 5 4 8 8 C 1.39930 * 120.53789 * 84.13086 * 3 2 1 9 9 C 1.47828 * 120.93755 * 359.70137 * 8 3 2 10 10 O 1.21555 * 120.00105 * 354.44311 * 9 8 3 11 11 N 1.34776 * 119.99847 * 174.44514 * 9 8 3 12 12 C 1.46499 * 120.00024 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47018 * 34.99681 * 12 11 9 14 14 C 1.53003 * 109.47297 * 275.00113 * 12 11 9 15 15 C 1.53001 * 109.47413 * 154.99918 * 12 11 9 16 16 N 1.46502 * 109.46925 * 305.00513 * 15 12 11 17 17 C 1.36938 * 120.00094 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99411 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00021 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99746 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00173 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.46925 * 89.99813 * 21 19 17 23 23 H 1.48496 * 109.47161 * 210.00136 * 21 19 17 24 24 H 1.48506 * 109.46793 * 330.00099 * 21 19 17 25 25 H 1.09007 * 109.47112 * 59.99835 * 1 2 3 26 26 H 1.09001 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47412 * 300.00506 * 1 2 3 28 28 H 1.09000 * 109.47113 * 239.99462 * 2 1 3 29 29 H 1.09003 * 109.46664 * 119.99979 * 2 1 3 30 30 H 1.08003 * 118.95183 * 179.97438 * 5 4 3 31 31 H 1.07996 * 120.54263 * 180.02562 * 7 6 5 32 32 H 0.96995 * 119.99893 * 0.02562 * 11 9 8 33 33 H 1.08997 * 109.47256 * 59.99716 * 14 12 11 34 34 H 1.09001 * 109.46990 * 179.97438 * 14 12 11 35 35 H 1.09000 * 109.46733 * 299.99742 * 14 12 11 36 36 H 1.09002 * 109.46855 * 65.00015 * 15 12 11 37 37 H 1.08995 * 109.47585 * 184.99870 * 15 12 11 38 38 H 0.96996 * 119.99802 * 359.97438 * 16 15 12 39 39 H 0.96998 * 119.99810 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3665 2.0149 -1.1323 5 6 2.8074 3.2574 -1.1421 6 7 2.9370 3.9638 -0.0359 7 6 2.6259 3.4483 1.1403 8 6 2.1531 2.1322 1.1989 9 6 1.7864 1.5131 2.4902 10 8 1.2789 0.4088 2.5125 11 7 2.0147 2.1732 3.6429 12 6 1.6508 1.5600 4.9226 13 1 1.8099 0.4830 4.8677 14 6 0.1775 1.8430 5.2232 15 6 2.5204 2.1480 6.0357 16 7 3.9343 1.9824 5.6896 17 6 4.9055 2.4364 6.5417 18 1 4.6290 2.9167 7.4686 19 6 6.2451 2.2790 6.2140 20 7 7.1785 2.7158 7.0328 21 14 6.7233 1.4474 4.6111 22 1 6.8373 2.4683 3.5387 23 1 8.0283 0.7594 4.7804 24 1 5.6841 0.4535 4.2399 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.0716 3.7110 -2.0859 31 1 2.7344 4.0330 2.0418 32 1 2.4192 3.0546 3.6251 33 1 -0.4421 1.4241 4.4303 34 1 -0.0934 1.3863 6.1751 35 1 0.0183 2.9199 5.2781 36 1 2.2961 3.2085 6.1500 37 1 2.3123 1.6297 6.9716 38 1 4.1825 1.5513 4.8569 39 1 8.1147 2.6055 6.8040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699390833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:35 Heat of formation + Delta-G solvation = -0.469312 kcal Electronic energy + Delta-G solvation = -21893.888944 eV Core-core repulsion = 18643.117092 eV Total energy + Delta-G solvation = -3250.771852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.48237 -40.60882 -37.96495 -36.23273 -35.41197 -34.25012 -33.34651 -32.42202 -31.12020 -27.63907 -26.56083 -26.07449 -24.16853 -23.15904 -22.67197 -21.67596 -19.90523 -19.11045 -18.59866 -17.89956 -17.16102 -16.74167 -16.47961 -16.02897 -15.65821 -15.33907 -15.17870 -14.94383 -14.82621 -14.47144 -14.17265 -13.90765 -13.68225 -13.55587 -13.21214 -12.92248 -12.80550 -12.63776 -12.54995 -12.24499 -12.00002 -11.91416 -11.76153 -11.74061 -11.05414 -10.82359 -10.80163 -10.43928 -10.10694 -9.33266 -8.05641 -5.38235 -0.69891 -0.15756 1.31231 1.33390 1.40053 1.70132 1.98895 2.42374 2.63754 2.87477 2.99256 3.20508 3.26871 3.49082 3.58794 3.72714 3.92876 4.18399 4.22716 4.28368 4.37647 4.42864 4.45354 4.71437 4.80224 4.85430 4.94924 5.00621 5.07938 5.11098 5.20010 5.28879 5.34956 5.50873 5.74321 5.75224 6.18445 6.38966 6.85744 7.04322 7.05692 7.80646 7.97689 9.15847 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.005842 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.349229 B = 4792.005781 C = 5663.889231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 C 0.228 3.772 4 N -0.535 5.535 5 C 0.316 3.684 6 N -0.539 5.539 7 C 0.188 3.812 8 C -0.256 4.256 9 C 0.567 3.433 10 O -0.543 6.543 11 N -0.707 5.707 12 C 0.141 3.859 13 H 0.075 0.925 14 C -0.147 4.147 15 C 0.146 3.854 16 N -0.758 5.758 17 C -0.228 4.228 18 H 0.066 0.934 19 C -0.055 4.055 20 N -0.979 5.979 21 Si 0.942 3.058 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.265 1.265 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.236 0.764 31 H 0.191 0.809 32 H 0.408 0.592 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.363 0.637 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.752 -0.774 -15.562 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.120 4.120 3 C 0.082 3.918 4 N -0.249 5.249 5 C 0.030 3.970 6 N -0.252 5.252 7 C 0.021 3.979 8 C -0.264 4.264 9 C 0.353 3.647 10 O -0.423 6.423 11 N -0.358 5.358 12 C 0.036 3.964 13 H 0.093 0.907 14 C -0.206 4.206 15 C 0.019 3.981 16 N -0.404 5.404 17 C -0.359 4.359 18 H 0.084 0.916 19 C -0.247 4.247 20 N -0.630 5.630 21 Si 0.771 3.229 22 H -0.202 1.202 23 H -0.224 1.224 24 H -0.190 1.190 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.252 0.748 31 H 0.207 0.793 32 H 0.245 0.755 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.196 0.804 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.804 -1.029 -16.201 22.656 hybrid contribution 1.024 -0.276 0.224 1.084 sum -14.780 -1.304 -15.977 21.804 Atomic orbital electron populations 1.21484 0.92282 1.03126 1.01185 1.20825 0.98113 0.88495 1.04560 1.22240 0.85781 0.97062 0.86742 1.68476 1.14453 1.12689 1.29303 1.25981 0.86828 0.85961 0.98231 1.68551 1.18313 1.38913 0.99457 1.23876 0.85720 0.90835 0.97491 1.21632 1.10088 0.98516 0.96134 1.17843 0.78417 0.84945 0.83447 1.90714 1.44456 1.19888 1.87206 1.45962 1.62671 1.21787 1.05412 1.21217 0.95623 0.98038 0.81500 0.90692 1.22010 0.92927 1.03008 1.02655 1.21176 0.81857 0.99277 0.95745 1.42721 1.02200 1.72421 1.23014 1.19053 0.86595 1.29598 1.00651 0.91621 1.25333 0.95792 1.02403 1.01168 1.69849 0.99959 1.54085 1.39128 0.85609 0.77312 0.78969 0.81038 1.20240 1.22447 1.18992 0.92730 0.90450 0.93282 0.89243 0.88540 0.74790 0.79253 0.75525 0.92417 0.90034 0.90990 0.93425 0.93552 0.80405 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.51 71.98 0.68 -1.82 16 2 C -0.08 -1.89 5.49 29.85 0.16 -1.73 16 3 C 0.23 5.72 6.12 42.92 0.26 5.98 16 4 N -0.54 -12.52 10.36 -187.07 -1.94 -14.46 16 5 C 0.32 6.38 12.27 180.84 2.22 8.60 16 6 N -0.54 -12.36 10.42 -198.98 -2.07 -14.43 16 7 C 0.19 4.29 10.80 85.07 0.92 5.21 16 8 C -0.26 -6.47 5.91 -19.91 -0.12 -6.59 16 9 C 0.57 15.49 7.69 86.78 0.67 16.16 16 10 O -0.54 -16.61 11.70 -3.89 -0.05 -16.66 16 11 N -0.71 -18.16 4.47 -445.42 -1.99 -20.15 16 12 C 0.14 3.78 2.73 44.99 0.12 3.90 16 13 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 14 C -0.15 -3.04 9.48 71.98 0.68 -2.36 16 15 C 0.15 4.78 5.82 86.38 0.50 5.28 16 16 N -0.76 -32.83 5.24 -343.45 -1.80 -34.62 16 17 C -0.23 -12.36 10.47 84.03 0.88 -11.48 16 18 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 19 C -0.05 -3.16 5.50 84.86 0.47 -2.69 16 20 N -0.98 -61.47 13.97 21.65 0.30 -61.17 16 21 Si 0.94 45.32 27.74 68.60 1.90 47.22 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 24 H -0.26 -11.97 6.52 99.48 0.65 -11.32 16 25 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.14 6.90 -2.39 -0.02 1.13 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.10 2.56 5.93 -2.39 -0.01 2.54 16 30 H 0.24 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.19 3.45 6.58 -2.91 -0.02 3.43 16 32 H 0.41 9.49 6.77 -92.71 -0.63 8.86 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.36 15.64 5.20 -92.71 -0.48 15.16 16 39 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -69.15 324.95 1.72 -67.43 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -0.09 Total: 28.38 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 7.45 Total: 18.47 kcal Atomic # 7 Polarization: -137.34 SS G_CDS: -7.50 Total: -144.84 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.05 Total: -16.66 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Total: -69.15 1.72 -67.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699390833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.960 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds