Wall clock time and date at job start Mon Mar 30 2020 23:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30862 * 125.41951 * 2 1 4 4 C 1.33319 * 109.68386 * 180.02562 * 3 2 1 5 5 C 1.36663 * 107.78713 * 359.97438 * 4 3 2 6 6 C 1.46768 * 126.84188 * 179.97438 * 5 4 3 7 7 O 1.21678 * 120.00310 * 352.19572 * 6 5 4 8 8 N 1.34776 * 119.99745 * 172.18888 * 6 5 4 9 9 C 1.47427 * 125.65076 * 2.29728 * 8 6 5 10 10 C 1.54908 * 104.83316 * 204.08972 * 9 8 6 11 11 C 1.55160 * 101.58052 * 322.98878 * 10 9 8 12 12 C 1.47019 * 125.64731 * 181.98478 * 8 6 5 13 13 H 1.09001 * 109.88399 * 59.56250 * 12 8 6 14 14 C 1.52998 * 109.88405 * 298.39725 * 12 8 6 15 15 N 1.46506 * 109.47170 * 75.76333 * 14 12 8 16 16 C 1.36940 * 119.99859 * 187.66673 * 15 14 12 17 17 H 1.07999 * 119.99952 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99320 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00237 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99536 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47406 * 59.99555 * 20 18 16 22 22 H 1.48501 * 109.46901 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46780 * 299.99698 * 20 18 16 24 24 N 1.34496 * 125.42017 * 180.02562 * 2 1 3 25 25 H 0.97004 * 126.46849 * 359.70513 * 24 2 1 26 26 H 1.08994 * 109.47011 * 269.96056 * 1 2 3 27 27 H 1.09003 * 109.47116 * 29.95662 * 1 2 3 28 28 H 1.08998 * 109.47037 * 149.96178 * 1 2 3 29 29 H 1.08000 * 126.10439 * 179.97438 * 4 3 2 30 30 H 1.09008 * 110.36371 * 322.92945 * 9 8 6 31 31 H 1.09001 * 110.36664 * 85.24355 * 9 8 6 32 32 H 1.08993 * 111.00343 * 81.06112 * 10 9 8 33 33 H 1.09001 * 110.99812 * 204.91441 * 10 9 8 34 34 H 1.09000 * 110.72082 * 153.86680 * 11 10 9 35 35 H 1.09004 * 110.71940 * 276.96181 * 11 10 9 36 36 H 1.09000 * 109.47570 * 195.76636 * 14 12 8 37 37 H 1.09004 * 109.47201 * 315.76222 * 14 12 8 38 38 H 0.96991 * 119.99629 * 7.66369 * 15 14 12 39 39 H 0.97006 * 119.99505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5975 -0.6609 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 5.8981 -0.9881 -0.1455 8 7 4.6966 -2.8324 0.1577 9 6 3.4355 -3.5838 0.2939 10 6 3.8259 -4.8811 1.0451 11 6 5.2202 -5.1859 0.4363 12 6 5.8188 -3.7803 0.2175 13 1 6.4754 -3.5254 1.0494 14 6 6.6014 -3.7439 -1.0967 15 7 7.4253 -2.5333 -1.1411 16 6 8.0953 -2.2028 -2.2888 17 1 8.0166 -2.8348 -3.1610 18 6 8.8764 -1.0560 -2.3306 19 7 8.9726 -0.2862 -1.2674 20 14 9.7897 -0.6047 -3.8964 21 1 8.8154 -0.4157 -5.0009 22 1 10.5467 0.6548 -3.6823 23 1 10.7338 -1.6950 -4.2503 24 7 2.2865 -1.0960 -0.0005 25 1 1.9849 -2.0180 0.0031 26 1 -0.3633 -0.0007 1.0276 27 1 -0.3633 0.8904 -0.5132 28 1 -0.3633 -0.8896 -0.5144 29 1 4.3978 1.3722 -0.0011 30 1 2.7136 -3.0109 0.8761 31 1 3.0279 -3.8222 -0.6886 32 1 3.8983 -4.7044 2.1181 33 1 3.1213 -5.6843 0.8295 34 1 5.8279 -5.7621 1.1339 35 1 5.1198 -5.7133 -0.5124 36 1 7.2429 -4.6226 -1.1621 37 1 5.9042 -3.7399 -1.9347 38 1 7.4962 -1.9660 -0.3576 39 1 9.5187 0.5150 -1.2966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699746902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:51 Heat of formation + Delta-G solvation = 65.480340 kcal Electronic energy + Delta-G solvation = -22325.541360 eV Core-core repulsion = 19077.629299 eV Total energy + Delta-G solvation = -3247.912061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.13870 -39.64165 -37.00606 -34.32011 -32.92709 -31.96452 -31.24746 -31.06365 -28.79184 -27.33945 -25.09568 -23.64386 -22.41264 -21.59316 -21.25989 -20.25514 -19.34162 -17.59775 -16.73733 -16.48283 -15.89080 -15.44503 -14.92700 -14.39536 -14.03062 -13.92168 -13.57630 -13.45056 -13.08343 -12.94386 -12.89362 -12.85560 -12.58264 -12.36051 -11.81285 -11.58523 -11.34758 -11.14932 -10.72880 -10.62938 -10.50583 -10.17085 -10.04829 -9.93311 -9.54171 -9.11790 -8.66451 -8.37211 -8.19356 -6.57633 -5.45163 -2.72915 1.55857 2.86670 2.99119 3.24930 3.57727 3.61499 3.63036 3.79204 4.32954 4.38134 4.52470 4.70068 4.79346 4.85853 5.00024 5.17835 5.21476 5.25582 5.37839 5.41145 5.55068 5.61645 5.73936 5.76728 5.81281 5.88233 5.94596 6.02864 6.15808 6.38267 6.59539 6.74902 6.79607 6.95396 7.24615 7.79886 7.89669 8.04638 8.61714 8.80767 9.84764 10.48757 10.87566 11.75688 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.006179 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.415253 B = 4530.402888 C = 5943.692371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.216 3.784 3 N -0.495 5.495 4 C 0.063 3.937 5 C -0.066 4.066 6 C 0.583 3.417 7 O -0.436 6.436 8 N -0.618 5.618 9 C 0.089 3.911 10 C -0.129 4.129 11 C -0.124 4.124 12 C 0.132 3.868 13 H 0.077 0.923 14 C 0.146 3.854 15 N -0.719 5.719 16 C -0.240 4.240 17 H 0.060 0.940 18 C -0.008 4.008 19 N -0.915 5.915 20 Si 0.897 3.103 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.289 1.289 24 N -0.559 5.559 25 H 0.418 0.582 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.186 0.814 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.398 0.602 39 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.439 -8.736 6.746 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.048 4.048 3 N -0.216 5.216 4 C -0.089 4.089 5 C -0.182 4.182 6 C 0.369 3.631 7 O -0.303 6.303 8 N -0.357 5.357 9 C -0.035 4.035 10 C -0.167 4.167 11 C -0.162 4.162 12 C 0.029 3.971 13 H 0.095 0.905 14 C 0.017 3.983 15 N -0.369 5.369 16 C -0.372 4.372 17 H 0.078 0.922 18 C -0.204 4.204 19 N -0.563 5.563 20 Si 0.729 3.271 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.216 1.216 24 N -0.170 5.170 25 H 0.262 0.738 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.203 0.797 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.239 0.761 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.958 -7.475 6.514 21.394 hybrid contribution 0.583 -0.855 -0.814 1.317 sum -18.375 -8.330 5.700 20.965 Atomic orbital electron populations 1.20229 0.84685 1.04234 1.03639 1.23388 0.95735 0.82091 1.03553 1.70152 1.02298 1.28325 1.20830 1.22688 0.94506 0.91488 1.00223 1.21429 0.83420 0.96063 1.17266 1.16631 0.87455 0.80136 0.78881 1.91105 1.24323 1.70818 1.44025 1.48368 1.06916 1.05466 1.74909 1.22439 0.87996 0.93450 0.99617 1.22734 0.97655 0.96215 1.00140 1.22644 0.95707 0.96091 1.01800 1.21909 0.87980 0.87031 1.00151 0.90536 1.20974 0.92649 0.91944 0.92753 1.42749 1.54433 1.24570 1.15171 1.19065 1.21136 1.05483 0.91490 0.92206 1.24668 1.01112 0.97787 0.96876 1.69723 1.43320 1.15632 1.27628 0.86430 0.79658 0.77399 0.83606 1.21676 1.21801 1.21614 1.43950 1.06403 1.10191 1.56483 0.73756 0.89955 0.88866 0.90790 0.79743 0.91808 0.91578 0.90500 0.89922 0.89892 0.90272 0.96456 0.96468 0.76062 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.51 36.00 0.38 -0.13 16 2 C 0.22 2.71 8.12 -155.61 -1.26 1.45 16 3 N -0.50 -8.05 11.20 -10.58 -0.12 -8.17 16 4 C 0.06 1.14 11.67 -17.48 -0.20 0.93 16 5 C -0.07 -1.13 6.84 -82.14 -0.56 -1.69 16 6 C 0.58 11.58 7.62 -12.81 -0.10 11.48 16 7 O -0.44 -11.09 13.17 5.21 0.07 -11.02 16 8 N -0.62 -9.98 3.06 -164.50 -0.50 -10.48 16 9 C 0.09 0.93 5.52 -2.53 -0.01 0.92 16 10 C -0.13 -1.10 7.09 -24.58 -0.17 -1.27 16 11 C -0.12 -1.38 6.45 -24.89 -0.16 -1.54 16 12 C 0.13 2.20 3.06 -66.95 -0.21 2.00 16 13 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 14 C 0.15 3.12 5.62 -4.04 -0.02 3.10 16 15 N -0.72 -19.86 4.15 -59.90 -0.25 -20.11 16 16 C -0.24 -7.29 9.99 -15.06 -0.15 -7.44 16 17 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -29.83 13.06 55.49 0.72 -29.11 16 20 Si 0.90 23.96 29.55 -169.99 -5.02 18.94 16 21 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 22 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 N -0.56 -6.97 5.45 -7.02 -0.04 -7.01 16 25 H 0.42 3.82 5.39 -40.82 -0.22 3.60 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.19 3.37 8.06 -52.49 -0.42 2.95 16 30 H 0.06 0.56 5.51 -51.92 -0.29 0.27 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 36 H 0.02 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.40 11.79 5.12 -40.82 -0.21 11.58 16 39 H 0.25 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -38.48 318.35 -8.23 -46.71 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.31 Total: 7.97 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -2.57 Total: 7.48 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -0.18 Total: -74.87 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.02 Total: 18.94 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.48 -8.23 -46.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.187 kcal (2) G-P(sol) polarization free energy of solvation -38.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds