Wall clock time and date at job start Mon Mar 30 2020 23:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30862 * 125.41951 * 2 1 4 4 C 1.33319 * 109.68386 * 180.02562 * 3 2 1 5 5 C 1.36663 * 107.78713 * 359.97438 * 4 3 2 6 6 C 1.46768 * 126.84188 * 179.97438 * 5 4 3 7 7 O 1.21678 * 120.00310 * 352.19572 * 6 5 4 8 8 N 1.34776 * 119.99745 * 172.18888 * 6 5 4 9 9 C 1.47427 * 125.65076 * 2.29728 * 8 6 5 10 10 C 1.54908 * 104.83316 * 204.08972 * 9 8 6 11 11 C 1.55160 * 101.58052 * 322.98878 * 10 9 8 12 12 C 1.47019 * 125.64731 * 181.98478 * 8 6 5 13 13 H 1.09001 * 109.88399 * 59.56250 * 12 8 6 14 14 C 1.52998 * 109.88405 * 298.39725 * 12 8 6 15 15 N 1.46506 * 109.47170 * 75.76333 * 14 12 8 16 16 C 1.36940 * 119.99859 * 187.66673 * 15 14 12 17 17 H 1.07999 * 119.99952 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99320 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00237 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99536 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47406 * 59.99555 * 20 18 16 22 22 H 1.48501 * 109.46901 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46780 * 299.99698 * 20 18 16 24 24 N 1.34496 * 125.42017 * 180.02562 * 2 1 3 25 25 H 0.97004 * 126.46849 * 359.70513 * 24 2 1 26 26 H 1.08994 * 109.47011 * 269.96056 * 1 2 3 27 27 H 1.09003 * 109.47116 * 29.95662 * 1 2 3 28 28 H 1.08998 * 109.47037 * 149.96178 * 1 2 3 29 29 H 1.08000 * 126.10439 * 179.97438 * 4 3 2 30 30 H 1.09008 * 110.36371 * 322.92945 * 9 8 6 31 31 H 1.09001 * 110.36664 * 85.24355 * 9 8 6 32 32 H 1.08993 * 111.00343 * 81.06112 * 10 9 8 33 33 H 1.09001 * 110.99812 * 204.91441 * 10 9 8 34 34 H 1.09000 * 110.72082 * 153.86680 * 11 10 9 35 35 H 1.09004 * 110.71940 * 276.96181 * 11 10 9 36 36 H 1.09000 * 109.47570 * 195.76636 * 14 12 8 37 37 H 1.09004 * 109.47201 * 315.76222 * 14 12 8 38 38 H 0.96991 * 119.99629 * 7.66369 * 15 14 12 39 39 H 0.97006 * 119.99505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5975 -0.6609 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 5.8981 -0.9881 -0.1455 8 7 4.6966 -2.8324 0.1577 9 6 3.4355 -3.5838 0.2939 10 6 3.8259 -4.8811 1.0451 11 6 5.2202 -5.1859 0.4363 12 6 5.8188 -3.7803 0.2175 13 1 6.4754 -3.5254 1.0494 14 6 6.6014 -3.7439 -1.0967 15 7 7.4253 -2.5333 -1.1411 16 6 8.0953 -2.2028 -2.2888 17 1 8.0166 -2.8348 -3.1610 18 6 8.8764 -1.0560 -2.3306 19 7 8.9726 -0.2862 -1.2674 20 14 9.7897 -0.6047 -3.8964 21 1 8.8154 -0.4157 -5.0009 22 1 10.5467 0.6548 -3.6823 23 1 10.7338 -1.6950 -4.2503 24 7 2.2865 -1.0960 -0.0005 25 1 1.9849 -2.0180 0.0031 26 1 -0.3633 -0.0007 1.0276 27 1 -0.3633 0.8904 -0.5132 28 1 -0.3633 -0.8896 -0.5144 29 1 4.3978 1.3722 -0.0011 30 1 2.7136 -3.0109 0.8761 31 1 3.0279 -3.8222 -0.6886 32 1 3.8983 -4.7044 2.1181 33 1 3.1213 -5.6843 0.8295 34 1 5.8279 -5.7621 1.1339 35 1 5.1198 -5.7133 -0.5124 36 1 7.2429 -4.6226 -1.1621 37 1 5.9042 -3.7399 -1.9347 38 1 7.4962 -1.9660 -0.3576 39 1 9.5187 0.5150 -1.2966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699746902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:50 Heat of formation + Delta-G solvation = 36.613022 kcal Electronic energy + Delta-G solvation = -22326.793140 eV Core-core repulsion = 19077.629299 eV Total energy + Delta-G solvation = -3249.163842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.31614 -40.93361 -38.40406 -36.27528 -34.21652 -33.26154 -32.88923 -32.14360 -30.37324 -28.36102 -26.75834 -25.12048 -24.11315 -22.65535 -22.51435 -21.41110 -20.59916 -19.31243 -18.38784 -17.67223 -17.13597 -16.73300 -16.59122 -16.10057 -15.25238 -15.18388 -15.10696 -14.87413 -14.64574 -14.26029 -14.02319 -13.81373 -13.46254 -13.31204 -13.17536 -13.11857 -12.91311 -12.68818 -12.32223 -12.21368 -11.99117 -11.67218 -11.54692 -11.33755 -11.20156 -10.89458 -10.78692 -9.77297 -9.44496 -8.79838 -7.80245 -5.08058 0.29711 1.41060 1.46304 1.52236 1.70273 1.79673 2.09494 2.36948 2.59107 3.35023 3.46711 3.52761 3.56962 3.72405 3.96445 4.09808 4.13460 4.26896 4.34861 4.35819 4.48191 4.62121 4.75500 4.77585 4.78420 4.82171 4.84697 4.98370 5.10289 5.11560 5.12431 5.35597 5.42159 5.47830 5.54349 6.29584 6.36315 6.49971 6.86543 7.23641 7.48958 8.33359 8.58293 9.41434 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.006179 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.415253 B = 4530.402888 C = 5943.692371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.240 3.760 3 N -0.529 5.529 4 C 0.042 3.958 5 C -0.081 4.081 6 C 0.576 3.424 7 O -0.510 6.510 8 N -0.616 5.616 9 C 0.077 3.923 10 C -0.113 4.113 11 C -0.114 4.114 12 C 0.131 3.869 13 H 0.051 0.949 14 C 0.142 3.858 15 N -0.735 5.735 16 C -0.248 4.248 17 H 0.064 0.936 18 C -0.074 4.074 19 N -0.954 5.954 20 Si 0.968 3.032 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.274 1.274 24 N -0.540 5.540 25 H 0.436 0.564 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.161 0.839 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.028 0.972 37 H 0.010 0.990 38 H 0.386 0.614 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.929 -11.496 6.609 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.024 4.024 3 N -0.249 5.249 4 C -0.111 4.111 5 C -0.198 4.198 6 C 0.363 3.637 7 O -0.383 6.383 8 N -0.352 5.352 9 C -0.045 4.045 10 C -0.151 4.151 11 C -0.152 4.152 12 C 0.028 3.972 13 H 0.069 0.931 14 C 0.015 3.985 15 N -0.383 5.383 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.267 4.267 19 N -0.604 5.604 20 Si 0.797 3.203 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.200 1.200 24 N -0.152 5.152 25 H 0.284 0.716 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.179 0.821 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.028 0.972 38 H 0.225 0.775 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -22.526 -10.358 6.375 25.600 hybrid contribution 1.514 -0.061 -0.748 1.690 sum -21.012 -10.419 5.628 24.119 Atomic orbital electron populations 1.20566 0.80181 1.06155 1.05803 1.24483 0.97700 0.80921 0.99327 1.70152 1.01630 1.30291 1.22873 1.22537 0.95121 0.92064 1.01387 1.20914 0.84503 0.95317 1.19019 1.17062 0.87307 0.81420 0.77907 1.91061 1.26976 1.72527 1.47754 1.48437 1.09238 1.04551 1.72980 1.22883 0.85855 0.94145 1.01570 1.22776 0.96378 0.95925 0.99980 1.22647 0.97317 0.92037 1.03219 1.21903 0.88203 0.90730 0.96381 0.93103 1.21196 0.92344 0.89707 0.95300 1.42998 1.55136 1.26240 1.13969 1.19509 1.20665 1.05407 0.92453 0.91801 1.25542 1.02799 0.98079 1.00299 1.69945 1.44496 1.15975 1.29957 0.85307 0.78379 0.77070 0.79529 1.21118 1.22131 1.20014 1.43775 1.04373 1.11283 1.55809 0.71586 0.87471 0.88494 0.87311 0.82127 0.89701 0.89672 0.89833 0.85712 0.88154 0.89185 0.95482 0.97189 0.77500 0.94762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.51 71.23 0.75 0.05 16 2 C 0.24 5.48 8.12 138.19 1.12 6.60 16 3 N -0.53 -17.21 11.20 -187.39 -2.10 -19.31 16 4 C 0.04 1.59 11.67 84.10 0.98 2.57 16 5 C -0.08 -2.83 6.84 40.01 0.27 -2.56 16 6 C 0.58 23.94 7.62 86.47 0.66 24.60 16 7 O -0.51 -28.12 13.17 -4.28 -0.06 -28.18 16 8 N -0.62 -19.69 3.06 -792.59 -2.43 -22.12 16 9 C 0.08 1.34 5.52 86.85 0.48 1.82 16 10 C -0.11 -1.37 7.09 31.99 0.23 -1.14 16 11 C -0.11 -2.16 6.45 31.79 0.20 -1.96 16 12 C 0.13 4.37 3.06 45.35 0.14 4.51 16 13 H 0.05 1.95 8.11 -2.39 -0.02 1.93 16 14 C 0.14 6.21 5.62 86.38 0.49 6.70 16 15 N -0.73 -42.52 4.15 -343.43 -1.43 -43.94 16 16 C -0.25 -15.57 9.99 84.03 0.84 -14.73 16 17 H 0.06 3.84 7.83 -2.91 -0.02 3.82 16 18 C -0.07 -4.77 5.50 84.86 0.47 -4.30 16 19 N -0.95 -65.43 13.06 21.65 0.28 -65.15 16 20 Si 0.97 50.91 29.55 68.60 2.03 52.93 16 21 H -0.28 -14.56 7.11 99.48 0.71 -13.86 16 22 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 23 H -0.27 -13.60 7.11 99.48 0.71 -12.90 16 24 N -0.54 -12.29 5.45 -176.11 -0.96 -13.25 16 25 H 0.44 6.28 5.39 -92.71 -0.50 5.78 16 26 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.16 6.66 8.06 -2.91 -0.02 6.64 16 30 H 0.09 1.13 5.51 -2.38 -0.01 1.11 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.56 7.85 -2.39 -0.02 1.54 16 36 H 0.03 1.14 8.09 -2.39 -0.02 1.12 16 37 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.39 24.40 5.12 -92.71 -0.47 23.92 16 39 H 0.24 16.22 8.31 -92.70 -0.77 15.45 16 Total: -1.00 -92.32 318.35 2.07 -90.25 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.10 Total: 26.59 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 6.63 Total: 22.17 kcal Atomic # 7 Polarization: -157.14 SS G_CDS: -6.63 Total: -163.77 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.06 Total: -28.18 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.03 Total: 52.93 kcal Total: -92.32 2.07 -90.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.864 kcal (2) G-P(sol) polarization free energy of solvation -92.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds