Wall clock time and date at job start Mon Mar 30 2020 23:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30859 * 125.41757 * 2 1 4 4 C 1.33325 * 109.68631 * 179.78617 * 3 2 1 5 5 C 1.36665 * 107.78010 * 0.37404 * 4 3 2 6 6 C 1.46764 * 126.83917 * 179.89566 * 5 4 3 7 7 O 1.21681 * 120.00267 * 6.32786 * 6 5 4 8 8 N 1.34782 * 119.99972 * 186.32333 * 6 5 4 9 9 C 1.47420 * 125.64593 * 5.81295 * 8 6 5 10 10 C 1.54910 * 104.83021 * 155.92064 * 9 8 6 11 11 C 1.55158 * 101.58244 * 37.01102 * 10 9 8 12 12 C 1.47020 * 125.64601 * 185.87210 * 8 6 5 13 13 H 1.08998 * 110.01265 * 300.49733 * 12 8 6 14 14 C 1.52995 * 109.88374 * 61.59624 * 12 8 6 15 15 N 1.46494 * 109.47175 * 286.06388 * 14 12 8 16 16 C 1.36938 * 120.00220 * 172.43100 * 15 14 12 17 17 H 1.08006 * 120.00002 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00346 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99661 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00244 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47162 * 270.00440 * 20 18 16 22 22 H 1.48501 * 109.47270 * 30.00127 * 20 18 16 23 23 H 1.48496 * 109.47120 * 150.00107 * 20 18 16 24 24 N 1.34493 * 125.41848 * 180.02562 * 2 1 3 25 25 H 0.96993 * 126.47520 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.46782 * 269.97860 * 1 2 3 27 27 H 1.08997 * 109.47083 * 29.97451 * 1 2 3 28 28 H 1.08998 * 109.47165 * 149.97667 * 1 2 3 29 29 H 1.07994 * 126.10888 * 180.27586 * 4 3 2 30 30 H 1.08999 * 110.36590 * 37.08533 * 9 8 6 31 31 H 1.08997 * 110.46614 * 274.80498 * 9 8 6 32 32 H 1.09001 * 111.00289 * 278.93572 * 10 9 8 33 33 H 1.08998 * 111.03633 * 155.10561 * 10 9 8 34 34 H 1.09000 * 110.71583 * 206.13392 * 11 10 9 35 35 H 1.08991 * 110.71616 * 82.86277 * 11 10 9 36 36 H 1.09001 * 109.47179 * 166.06561 * 14 12 8 37 37 H 1.09004 * 109.47589 * 46.06883 * 14 12 8 38 38 H 0.96999 * 119.99828 * 352.43649 * 15 14 12 39 39 H 0.96998 * 119.99961 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7050 0.0047 5 6 3.5976 -0.6608 -0.0007 6 6 4.8029 -1.4982 -0.0005 7 8 5.8998 -0.9857 0.1210 8 7 4.6948 -2.8349 -0.1348 9 6 3.4485 -3.5728 -0.4097 10 6 3.9088 -4.8970 -1.0687 11 6 5.2090 -5.2024 -0.2790 12 6 5.8001 -3.7987 -0.0302 13 1 6.5596 -3.5781 -0.7802 14 6 6.4162 -3.7341 1.3687 15 7 7.2132 -2.5115 1.4953 16 6 7.7358 -2.1576 2.7105 17 1 7.5608 -2.7801 3.5756 18 6 8.4906 -0.9987 2.8306 19 7 8.7035 -0.2399 1.7765 20 14 9.2042 -0.5164 4.4881 21 1 8.2317 0.3380 5.2160 22 1 9.4802 -1.7399 5.2832 23 1 10.4678 0.2362 4.2830 24 7 2.2865 -1.0960 -0.0005 25 1 1.9850 -2.0179 -0.0013 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3978 1.3722 0.0100 30 1 2.8164 -3.0078 -1.0948 31 1 2.9137 -3.7766 0.5179 32 1 4.1199 -4.7533 -2.1284 33 1 3.1691 -5.6842 -0.9232 34 1 5.8903 -5.8074 -0.8772 35 1 4.9797 -5.6972 0.6647 36 1 7.0561 -4.6027 1.5244 37 1 5.6223 -3.7293 2.1156 38 1 7.3706 -1.9525 0.7183 39 1 8.3326 -0.4902 0.9159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699746903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:54 Heat of formation + Delta-G solvation = 57.446980 kcal Electronic energy + Delta-G solvation = -22414.654183 eV Core-core repulsion = 19166.393770 eV Total energy + Delta-G solvation = -3248.260414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.18970 -39.76254 -37.14814 -34.57535 -32.99165 -32.03388 -31.33291 -31.13745 -28.62590 -27.40801 -24.93042 -23.56962 -22.54976 -21.67866 -21.36130 -20.30001 -19.41231 -17.68157 -16.87729 -16.62260 -16.08403 -15.54687 -15.24440 -14.17398 -14.10428 -13.95320 -13.56037 -13.48478 -13.26200 -13.22581 -12.96085 -12.94830 -12.64182 -12.51395 -12.09870 -11.68832 -11.43099 -10.99485 -10.77465 -10.55894 -10.42537 -10.13983 -10.10149 -9.86137 -9.45198 -8.92537 -8.67669 -8.44506 -8.26723 -6.66173 -5.80206 -2.77256 1.47610 2.79785 2.93258 3.14664 3.63254 3.67569 3.70212 3.83429 4.27574 4.32506 4.45408 4.68458 4.75694 4.87193 4.94587 5.09993 5.14340 5.23660 5.29906 5.35584 5.50793 5.55171 5.66304 5.71534 5.79919 5.83021 5.88939 5.94657 6.08087 6.28629 6.40109 6.68454 6.70133 6.84954 7.19520 7.68528 7.98527 8.03537 8.53288 9.12570 9.65187 10.47629 10.65108 11.70783 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.006435 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.818748 B = 4350.129601 C = 5771.451518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.220 3.780 3 N -0.495 5.495 4 C 0.068 3.932 5 C -0.070 4.070 6 C 0.598 3.402 7 O -0.463 6.463 8 N -0.617 5.617 9 C 0.089 3.911 10 C -0.128 4.128 11 C -0.124 4.124 12 C 0.130 3.870 13 H 0.076 0.924 14 C 0.152 3.848 15 N -0.735 5.735 16 C -0.336 4.336 17 H 0.054 0.946 18 C -0.041 4.041 19 N -0.940 5.940 20 Si 1.079 2.921 21 H -0.298 1.298 22 H -0.298 1.298 23 H -0.289 1.289 24 N -0.557 5.557 25 H 0.418 0.582 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.186 0.814 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.812 -9.198 -7.831 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 N -0.215 5.215 4 C -0.085 4.085 5 C -0.185 4.185 6 C 0.385 3.615 7 O -0.332 6.332 8 N -0.355 5.355 9 C -0.035 4.035 10 C -0.167 4.167 11 C -0.162 4.162 12 C 0.027 3.973 13 H 0.094 0.906 14 C 0.022 3.978 15 N -0.388 5.388 16 C -0.468 4.468 17 H 0.072 0.928 18 C -0.240 4.240 19 N -0.585 5.585 20 Si 0.911 3.089 21 H -0.227 1.227 22 H -0.225 1.225 23 H -0.215 1.215 24 N -0.167 5.167 25 H 0.260 0.740 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.203 0.797 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.226 0.774 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.523 -6.959 -6.782 20.036 hybrid contribution -0.884 -2.403 -0.772 2.674 sum -18.407 -9.361 -7.554 21.988 Atomic orbital electron populations 1.20246 0.84555 1.04177 1.03856 1.23413 0.95772 0.81969 1.03189 1.70169 1.02236 1.28253 1.20856 1.22702 0.94580 0.91425 0.99755 1.21282 0.83418 0.95987 1.17860 1.16479 0.87222 0.79906 0.77864 1.90878 1.25165 1.71183 1.45985 1.48344 1.08957 1.05090 1.73075 1.22408 0.88307 0.93703 0.99116 1.22731 0.98002 0.95904 1.00018 1.22643 0.96688 0.95926 1.00954 1.21930 0.88772 0.86874 0.99708 0.90607 1.20926 0.93531 0.91543 0.91767 1.42829 1.61289 1.24410 1.10275 1.19954 1.30314 1.08542 0.87956 0.92785 1.25595 0.99503 0.93893 1.05056 1.70674 1.47293 1.39860 1.00707 0.83271 0.76390 0.75000 0.74229 1.22655 1.22509 1.21510 1.43743 1.06302 1.10174 1.56486 0.73956 0.89799 0.88801 0.90772 0.79711 0.91492 0.91706 0.90426 0.89796 0.89814 0.90194 0.96363 0.96440 0.77447 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.51 36.01 0.38 -0.13 16 2 C 0.22 2.78 8.12 -155.61 -1.26 1.52 16 3 N -0.49 -8.08 11.20 -10.58 -0.12 -8.20 16 4 C 0.07 1.23 11.67 -17.47 -0.20 1.03 16 5 C -0.07 -1.20 6.82 -82.14 -0.56 -1.76 16 6 C 0.60 11.91 7.53 -12.81 -0.10 11.82 16 7 O -0.46 -11.63 13.05 5.21 0.07 -11.56 16 8 N -0.62 -10.00 3.07 -164.52 -0.50 -10.50 16 9 C 0.09 0.93 5.27 -2.53 -0.01 0.91 16 10 C -0.13 -1.09 7.08 -24.58 -0.17 -1.27 16 11 C -0.12 -1.38 6.45 -24.89 -0.16 -1.54 16 12 C 0.13 2.19 3.04 -66.95 -0.20 1.98 16 13 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 14 C 0.15 3.30 5.62 -4.05 -0.02 3.28 16 15 N -0.74 -20.55 4.40 -59.91 -0.26 -20.81 16 16 C -0.34 -10.43 9.99 -15.06 -0.15 -10.58 16 17 H 0.05 1.65 7.83 -52.48 -0.41 1.24 16 18 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 19 N -0.94 -31.73 13.70 55.49 0.76 -30.97 16 20 Si 1.08 28.19 29.92 -169.99 -5.09 23.11 16 21 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 22 H -0.30 -7.32 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 N -0.56 -7.01 5.43 -7.02 -0.04 -7.05 16 25 H 0.42 3.86 5.55 -40.82 -0.23 3.63 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.19 3.40 8.06 -52.49 -0.42 2.98 16 30 H 0.07 0.59 6.25 -51.93 -0.32 0.27 16 31 H 0.06 0.60 7.86 -51.93 -0.41 0.20 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 36 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.38 11.26 3.74 -40.82 -0.15 11.11 16 39 H 0.27 9.08 6.48 -40.82 -0.26 8.82 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -39.90 316.53 -8.19 -48.09 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.22 Total: 9.28 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.57 Total: 3.85 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -0.16 Total: -77.53 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 28.19 SS G_CDS: -5.09 Total: 23.11 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -39.90 -8.19 -48.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.538 kcal (2) G-P(sol) polarization free energy of solvation -39.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds