Wall clock time and date at job start Mon Mar 30 2020 23:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30859 * 125.41757 * 2 1 4 4 C 1.33325 * 109.68631 * 179.78617 * 3 2 1 5 5 C 1.36665 * 107.78010 * 0.37404 * 4 3 2 6 6 C 1.46764 * 126.83917 * 179.89566 * 5 4 3 7 7 O 1.21681 * 120.00267 * 6.32786 * 6 5 4 8 8 N 1.34782 * 119.99972 * 186.32333 * 6 5 4 9 9 C 1.47420 * 125.64593 * 5.81295 * 8 6 5 10 10 C 1.54910 * 104.83021 * 155.92064 * 9 8 6 11 11 C 1.55158 * 101.58244 * 37.01102 * 10 9 8 12 12 C 1.47020 * 125.64601 * 185.87210 * 8 6 5 13 13 H 1.08998 * 110.01265 * 300.49733 * 12 8 6 14 14 C 1.52995 * 109.88374 * 61.59624 * 12 8 6 15 15 N 1.46494 * 109.47175 * 286.06388 * 14 12 8 16 16 C 1.36938 * 120.00220 * 172.43100 * 15 14 12 17 17 H 1.08006 * 120.00002 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00346 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99661 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00244 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47162 * 270.00440 * 20 18 16 22 22 H 1.48501 * 109.47270 * 30.00127 * 20 18 16 23 23 H 1.48496 * 109.47120 * 150.00107 * 20 18 16 24 24 N 1.34493 * 125.41848 * 180.02562 * 2 1 3 25 25 H 0.96993 * 126.47520 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.46782 * 269.97860 * 1 2 3 27 27 H 1.08997 * 109.47083 * 29.97451 * 1 2 3 28 28 H 1.08998 * 109.47165 * 149.97667 * 1 2 3 29 29 H 1.07994 * 126.10888 * 180.27586 * 4 3 2 30 30 H 1.08999 * 110.36590 * 37.08533 * 9 8 6 31 31 H 1.08997 * 110.46614 * 274.80498 * 9 8 6 32 32 H 1.09001 * 111.00289 * 278.93572 * 10 9 8 33 33 H 1.08998 * 111.03633 * 155.10561 * 10 9 8 34 34 H 1.09000 * 110.71583 * 206.13392 * 11 10 9 35 35 H 1.08991 * 110.71616 * 82.86277 * 11 10 9 36 36 H 1.09001 * 109.47179 * 166.06561 * 14 12 8 37 37 H 1.09004 * 109.47589 * 46.06883 * 14 12 8 38 38 H 0.96999 * 119.99828 * 352.43649 * 15 14 12 39 39 H 0.96998 * 119.99961 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7050 0.0047 5 6 3.5976 -0.6608 -0.0007 6 6 4.8029 -1.4982 -0.0005 7 8 5.8998 -0.9857 0.1210 8 7 4.6948 -2.8349 -0.1348 9 6 3.4485 -3.5728 -0.4097 10 6 3.9088 -4.8970 -1.0687 11 6 5.2090 -5.2024 -0.2790 12 6 5.8001 -3.7987 -0.0302 13 1 6.5596 -3.5781 -0.7802 14 6 6.4162 -3.7341 1.3687 15 7 7.2132 -2.5115 1.4953 16 6 7.7358 -2.1576 2.7105 17 1 7.5608 -2.7801 3.5756 18 6 8.4906 -0.9987 2.8306 19 7 8.7035 -0.2399 1.7765 20 14 9.2042 -0.5164 4.4881 21 1 8.2317 0.3380 5.2160 22 1 9.4802 -1.7399 5.2832 23 1 10.4678 0.2362 4.2830 24 7 2.2865 -1.0960 -0.0005 25 1 1.9850 -2.0179 -0.0013 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3978 1.3722 0.0100 30 1 2.8164 -3.0078 -1.0948 31 1 2.9137 -3.7766 0.5179 32 1 4.1199 -4.7533 -2.1284 33 1 3.1691 -5.6842 -0.9232 34 1 5.8903 -5.8074 -0.8772 35 1 4.9797 -5.6972 0.6647 36 1 7.0561 -4.6027 1.5244 37 1 5.6223 -3.7293 2.1156 38 1 7.3706 -1.9525 0.7183 39 1 8.3326 -0.4902 0.9159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699746903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:53 Heat of formation + Delta-G solvation = 27.255933 kcal Electronic energy + Delta-G solvation = -22415.963365 eV Core-core repulsion = 19166.393770 eV Total energy + Delta-G solvation = -3249.569596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.37574 -41.06873 -38.54518 -36.61614 -34.28031 -33.29985 -32.95888 -32.22478 -30.23888 -28.43237 -26.55701 -25.15428 -24.36489 -22.73674 -22.59586 -21.45539 -20.68757 -19.39004 -18.64316 -17.80744 -17.50726 -16.87983 -16.53630 -15.81077 -15.58418 -15.28689 -15.19852 -15.08615 -14.76014 -14.34372 -14.14178 -13.95651 -13.67741 -13.42847 -13.23789 -13.03471 -12.62255 -12.58804 -12.27064 -12.23320 -11.87518 -11.71504 -11.45775 -11.26621 -11.21280 -10.95504 -10.91806 -9.87849 -9.52381 -8.95281 -8.31551 -5.21165 0.19976 1.50826 1.60161 1.64935 1.73430 1.78592 1.99901 2.25824 2.73013 3.28289 3.43396 3.47033 3.49698 3.66514 3.86605 4.01919 4.05237 4.19386 4.23301 4.25747 4.35938 4.54771 4.63126 4.66683 4.72824 4.74303 4.79742 4.90221 4.99802 5.04973 5.09359 5.27629 5.33705 5.42576 5.57479 6.24123 6.37455 6.61871 6.80011 7.01445 7.36178 8.21630 8.32242 9.21882 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.006435 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.818748 B = 4350.129601 C = 5771.451518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.244 3.756 3 N -0.527 5.527 4 C 0.045 3.955 5 C -0.085 4.085 6 C 0.588 3.412 7 O -0.533 6.533 8 N -0.615 5.615 9 C 0.076 3.924 10 C -0.112 4.112 11 C -0.113 4.113 12 C 0.130 3.870 13 H 0.050 0.950 14 C 0.147 3.853 15 N -0.753 5.753 16 C -0.341 4.341 17 H 0.055 0.945 18 C -0.107 4.107 19 N -0.971 5.971 20 Si 1.131 2.869 21 H -0.290 1.290 22 H -0.270 1.270 23 H -0.290 1.290 24 N -0.538 5.538 25 H 0.436 0.564 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.161 0.839 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.011 0.989 38 H 0.376 0.624 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.358 -11.948 -7.689 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.020 4.020 3 N -0.248 5.248 4 C -0.108 4.108 5 C -0.202 4.202 6 C 0.376 3.624 7 O -0.408 6.408 8 N -0.350 5.350 9 C -0.046 4.046 10 C -0.149 4.149 11 C -0.152 4.152 12 C 0.026 3.974 13 H 0.068 0.932 14 C 0.020 3.980 15 N -0.405 5.405 16 C -0.473 4.473 17 H 0.073 0.927 18 C -0.299 4.299 19 N -0.618 5.618 20 Si 0.956 3.044 21 H -0.218 1.218 22 H -0.196 1.196 23 H -0.216 1.216 24 N -0.149 5.149 25 H 0.282 0.718 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.179 0.821 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.043 0.957 37 H 0.029 0.971 38 H 0.215 0.785 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.156 -9.835 -6.659 24.262 hybrid contribution 0.070 -1.616 -0.848 1.826 sum -21.087 -11.451 -7.507 25.142 Atomic orbital electron populations 1.20589 0.80009 1.06487 1.05661 1.24520 0.97742 0.80785 0.98971 1.70166 1.01539 1.30239 1.22869 1.22549 0.95216 0.92015 1.00993 1.20799 0.84540 0.95262 1.19566 1.16940 0.87101 0.81254 0.77065 1.90837 1.27690 1.72821 1.49489 1.48421 1.11172 1.04117 1.71278 1.22877 0.86261 0.94455 1.00990 1.22776 0.97091 0.95508 0.99572 1.22654 0.98232 0.91836 1.02447 1.21920 0.89153 0.90645 0.95633 0.93166 1.21156 0.92766 0.89169 0.94948 1.43115 1.62077 1.26203 1.09063 1.20358 1.29460 1.08287 0.89157 0.92678 1.27233 1.00460 0.94339 1.07829 1.70798 1.49087 1.41141 1.00823 0.82617 0.75593 0.75795 0.70404 1.21763 1.19550 1.21582 1.43570 1.04251 1.11289 1.55800 0.71755 0.88012 0.88096 0.86883 0.82142 0.89414 0.89593 0.89808 0.85512 0.88063 0.89121 0.95660 0.97149 0.78477 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.51 71.24 0.75 0.05 16 2 C 0.24 5.61 8.12 138.20 1.12 6.73 16 3 N -0.53 -17.29 11.20 -187.39 -2.10 -19.39 16 4 C 0.05 1.75 11.67 84.10 0.98 2.73 16 5 C -0.09 -3.01 6.82 40.01 0.27 -2.74 16 6 C 0.59 24.57 7.53 86.47 0.65 25.22 16 7 O -0.53 -29.16 13.05 -4.29 -0.06 -29.22 16 8 N -0.61 -19.75 3.07 -792.63 -2.43 -22.18 16 9 C 0.08 1.32 5.27 86.86 0.46 1.77 16 10 C -0.11 -1.36 7.08 31.99 0.23 -1.13 16 11 C -0.11 -2.17 6.45 31.79 0.21 -1.96 16 12 C 0.13 4.37 3.04 45.34 0.14 4.51 16 13 H 0.05 1.93 8.13 -2.39 -0.02 1.91 16 14 C 0.15 6.55 5.62 86.38 0.49 7.03 16 15 N -0.75 -44.10 4.40 -343.46 -1.51 -45.61 16 16 C -0.34 -21.82 9.99 84.03 0.84 -20.98 16 17 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 18 C -0.11 -6.98 5.50 84.86 0.47 -6.51 16 19 N -0.97 -68.88 13.70 21.65 0.30 -68.58 16 20 Si 1.13 58.04 29.92 68.60 2.05 60.09 16 21 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 24 N -0.54 -12.39 5.43 -176.11 -0.96 -13.35 16 25 H 0.44 6.38 5.55 -92.71 -0.51 5.86 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 28 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.16 6.73 8.06 -2.91 -0.02 6.71 16 30 H 0.09 1.18 6.25 -2.39 -0.01 1.17 16 31 H 0.09 1.20 7.86 -2.39 -0.02 1.18 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.59 7.85 -2.39 -0.02 1.57 16 36 H 0.03 1.10 8.11 -2.39 -0.02 1.08 16 37 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.38 23.56 3.74 -92.71 -0.35 23.22 16 39 H 0.25 18.18 6.48 -92.71 -0.60 17.58 16 Total: -1.00 -95.94 316.53 2.28 -93.66 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.39 Total: 29.86 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.59 Total: 14.72 kcal Atomic # 7 Polarization: -162.41 SS G_CDS: -6.70 Total: -169.11 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 58.04 SS G_CDS: 2.05 Total: 60.09 kcal Total: -95.94 2.28 -93.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.918 kcal (2) G-P(sol) polarization free energy of solvation -95.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds