Wall clock time and date at job start Tue Mar 31 2020 01:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47437 * 2 1 4 4 N 1.46500 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99941 * 275.30978 * 4 3 2 6 6 H 1.07994 * 120.00081 * 37.58016 * 5 4 3 7 7 C 1.38821 * 120.00019 * 217.58158 * 5 4 3 8 8 N 1.31625 * 119.99568 * 21.42162 * 7 5 4 9 9 Si 1.86791 * 119.99803 * 201.42595 * 7 5 4 10 10 H 1.48499 * 109.47753 * 59.99991 * 9 7 5 11 11 H 1.48506 * 109.46787 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47147 * 299.99567 * 9 7 5 13 13 C 1.46500 * 120.00018 * 95.31566 * 4 3 2 14 14 C 1.53003 * 109.46750 * 269.99454 * 13 4 3 15 15 N 1.46500 * 109.47129 * 179.97438 * 14 13 4 16 16 C 1.34772 * 120.00289 * 180.02562 * 15 14 13 17 17 O 1.21522 * 120.00050 * 359.97438 * 16 15 14 18 18 C 1.48149 * 120.00503 * 180.02562 * 16 15 14 19 19 C 1.39436 * 120.09965 * 180.02562 * 18 16 15 20 20 N 1.32079 * 119.87311 * 179.97438 * 19 18 16 21 21 C 1.32138 * 120.07381 * 359.97438 * 20 19 18 22 22 C 1.38729 * 120.19132 * 0.27693 * 21 20 19 23 23 N 1.31799 * 120.12757 * 359.43687 * 22 21 20 24 24 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46886 * 300.00069 * 1 2 3 26 26 H 1.09002 * 109.46763 * 59.99923 * 1 2 3 27 27 H 1.09001 * 109.47362 * 239.99717 * 2 1 3 28 28 H 1.09002 * 109.47460 * 120.00351 * 2 1 3 29 29 H 1.09007 * 109.46884 * 60.00207 * 3 2 1 30 30 H 1.08995 * 109.47237 * 300.00209 * 3 2 1 31 31 H 0.96995 * 119.99118 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47458 * 150.00217 * 13 4 3 33 33 H 1.08996 * 109.47277 * 29.99359 * 13 4 3 34 34 H 1.09010 * 109.46892 * 60.00066 * 14 13 4 35 35 H 1.08999 * 109.47598 * 300.00230 * 14 13 4 36 36 H 0.97000 * 119.99550 * 359.97438 * 15 14 13 37 37 H 1.07997 * 120.06577 * 359.95077 * 19 18 16 38 38 H 1.07998 * 119.90284 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.93097 * 179.70012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1893 1.3327 1.1818 6 1 3.8170 0.6874 1.9636 7 6 5.3614 2.0512 1.3742 8 7 5.6021 3.1238 0.6503 9 14 6.5968 1.4957 2.6604 10 1 7.0657 0.1244 2.3369 11 1 7.7549 2.4253 2.6684 12 1 5.9523 1.4957 3.9983 13 6 4.2381 1.5596 -1.2624 14 6 4.4934 0.1641 -1.8353 15 7 5.2259 0.2813 -3.0986 16 6 5.5626 -0.8269 -3.7878 17 8 5.2589 -1.9234 -3.3610 18 6 6.3038 -0.7084 -5.0650 19 6 6.6527 -1.8536 -5.7798 20 7 7.3131 -1.7427 -6.9183 21 6 7.6422 -0.5489 -7.3794 22 6 7.3011 0.5921 -6.6679 23 7 6.6372 0.4908 -5.5338 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6768 1.9563 -0.8899 31 1 6.4209 3.6260 0.7851 32 1 5.1905 2.0591 -1.0847 33 1 3.6494 2.1415 -1.9715 34 1 3.5409 -0.3355 -2.0130 35 1 5.0821 -0.4178 -1.1262 36 1 5.4679 1.1567 -3.4394 37 1 6.3838 -2.8294 -5.4032 38 1 8.1818 -0.4615 -8.3108 39 1 7.5764 1.5655 -7.0462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714644188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:37 Heat of formation + Delta-G solvation = 25.424561 kcal Electronic energy + Delta-G solvation = -21191.542891 eV Core-core repulsion = 17941.893881 eV Total energy + Delta-G solvation = -3249.649010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.36499 -39.04197 -36.50272 -34.79411 -34.11916 -32.87668 -31.91683 -30.77864 -28.30241 -25.61012 -25.50418 -24.71176 -23.30894 -21.16325 -20.66173 -20.11829 -18.18512 -17.69645 -16.99995 -16.58332 -15.56629 -15.38332 -15.07323 -14.92735 -14.46418 -14.25090 -13.89129 -13.68517 -13.06856 -12.92573 -12.80001 -12.63500 -11.93321 -11.58423 -11.56078 -11.48653 -11.19454 -10.94872 -10.73681 -10.48464 -10.37875 -10.24501 -10.07088 -9.90629 -9.68466 -9.67976 -9.29097 -8.61838 -8.47059 -6.63626 -5.84846 -3.43797 0.21191 0.80308 2.78019 3.21700 3.36170 3.41148 3.45047 3.67180 3.86264 3.94618 4.22994 4.45297 4.67716 4.91449 5.05989 5.26023 5.27929 5.47346 5.66390 5.75926 5.98750 6.02971 6.09327 6.18945 6.27878 6.41020 6.51218 6.61513 6.65304 6.75668 6.88781 6.96992 6.98229 7.17515 7.37249 7.52910 7.79086 7.84192 8.38311 8.47126 9.13047 9.75039 10.32899 11.15327 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.004560 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.945814 B = 6138.832360 C = 7210.434923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.886 5.886 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.137 3.863 14 C 0.094 3.906 15 N -0.693 5.693 16 C 0.564 3.436 17 O -0.536 6.536 18 C 0.039 3.961 19 C 0.105 3.895 20 N -0.442 5.442 21 C 0.064 3.936 22 C 0.050 3.950 23 N -0.411 5.411 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.256 0.744 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.408 0.592 37 H 0.183 0.817 38 H 0.175 0.825 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 -3.504 -14.190 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.528 5.528 9 Si 0.726 3.274 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.010 3.990 14 C -0.031 4.031 15 N -0.343 5.343 16 C 0.346 3.654 17 O -0.413 6.413 18 C -0.103 4.103 19 C -0.055 4.055 20 N -0.156 5.156 21 C -0.097 4.097 22 C -0.112 4.112 23 N -0.129 5.129 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.243 0.757 37 H 0.200 0.800 38 H 0.192 0.808 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.799 -4.128 -13.769 14.397 hybrid contribution 0.927 0.161 0.363 1.008 sum 1.726 -3.967 -13.406 14.087 Atomic orbital electron populations 1.21722 0.97336 1.00403 1.01000 1.22190 0.93817 1.00941 1.01583 1.20943 0.85019 0.92980 0.98953 1.43594 0.99439 1.84794 1.02021 1.18986 1.05782 1.20572 0.93969 0.92055 1.25183 1.00784 0.94495 0.98087 1.69986 1.25736 1.14688 1.42428 0.86473 0.81003 0.78303 0.81657 1.20784 1.21589 1.20568 1.21062 1.00473 0.91012 0.86483 1.22618 0.94918 1.03226 0.82331 1.46033 1.55698 1.08770 1.23794 1.17672 0.79767 0.85265 0.82703 1.90794 1.55258 1.26382 1.68845 1.22447 0.99549 0.90679 0.97596 1.23852 0.91535 1.00432 0.89660 1.68612 1.08808 1.26482 1.11682 1.24081 0.96276 0.88908 1.00405 1.23882 0.95132 1.00946 0.91265 1.68405 1.07140 1.25585 1.11755 0.93804 0.93195 0.93481 0.92942 0.92325 0.93546 0.94733 0.93422 0.88296 0.95157 0.92582 0.91319 0.75683 0.80011 0.80834 0.80589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.15 -2.64 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 3.04 5.72 -4.04 -0.02 3.02 16 4 N -0.58 -13.90 2.43 -173.24 -0.42 -14.32 16 5 C -0.26 -7.01 9.45 -15.05 -0.14 -7.15 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.02 0.41 4.95 -17.42 -0.09 0.32 16 8 N -0.89 -24.64 11.47 55.49 0.64 -24.00 16 9 Si 0.90 21.33 29.60 -169.99 -5.03 16.29 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.14 3.05 5.45 -4.04 -0.02 3.02 16 14 C 0.09 1.90 6.00 -4.04 -0.02 1.88 16 15 N -0.69 -12.16 5.55 -61.15 -0.34 -12.50 16 16 C 0.56 9.76 7.81 -12.19 -0.10 9.66 16 17 O -0.54 -10.67 16.35 5.35 0.09 -10.58 16 18 C 0.04 0.55 6.75 -82.84 -0.56 -0.01 16 19 C 0.10 1.34 10.77 -17.00 -0.18 1.15 16 20 N -0.44 -5.05 10.49 -12.71 -0.13 -5.19 16 21 C 0.06 0.54 11.23 -17.24 -0.19 0.35 16 22 C 0.05 0.45 11.22 -17.38 -0.20 0.25 16 23 N -0.41 -5.23 9.71 -9.62 -0.09 -5.32 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.98 6.64 -51.93 -0.34 0.63 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.99 8.08 -51.92 -0.42 0.57 16 30 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.10 2.48 5.52 -51.93 -0.29 2.19 16 33 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 34 H 0.06 1.14 6.64 -51.92 -0.34 0.79 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.41 6.56 7.82 -40.82 -0.32 6.24 16 37 H 0.18 2.17 7.65 -52.49 -0.40 1.77 16 38 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -30.87 333.54 -7.03 -37.90 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.44 Total: 4.80 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.32 Total: 7.90 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.35 Total: -61.34 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.87 -7.03 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714644188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.325 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds