Wall clock time and date at job start Tue Mar 31 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47437 * 2 1 4 4 N 1.46500 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99941 * 275.30978 * 4 3 2 6 6 H 1.07994 * 120.00081 * 37.58016 * 5 4 3 7 7 C 1.38821 * 120.00019 * 217.58158 * 5 4 3 8 8 N 1.31625 * 119.99568 * 21.42162 * 7 5 4 9 9 Si 1.86791 * 119.99803 * 201.42595 * 7 5 4 10 10 H 1.48499 * 109.47753 * 59.99991 * 9 7 5 11 11 H 1.48506 * 109.46787 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47147 * 299.99567 * 9 7 5 13 13 C 1.46500 * 120.00018 * 95.31566 * 4 3 2 14 14 C 1.53003 * 109.46750 * 269.99454 * 13 4 3 15 15 N 1.46500 * 109.47129 * 179.97438 * 14 13 4 16 16 C 1.34772 * 120.00289 * 180.02562 * 15 14 13 17 17 O 1.21522 * 120.00050 * 359.97438 * 16 15 14 18 18 C 1.48149 * 120.00503 * 180.02562 * 16 15 14 19 19 C 1.39436 * 120.09965 * 180.02562 * 18 16 15 20 20 N 1.32079 * 119.87311 * 179.97438 * 19 18 16 21 21 C 1.32138 * 120.07381 * 359.97438 * 20 19 18 22 22 C 1.38729 * 120.19132 * 0.27693 * 21 20 19 23 23 N 1.31799 * 120.12757 * 359.43687 * 22 21 20 24 24 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46886 * 300.00069 * 1 2 3 26 26 H 1.09002 * 109.46763 * 59.99923 * 1 2 3 27 27 H 1.09001 * 109.47362 * 239.99717 * 2 1 3 28 28 H 1.09002 * 109.47460 * 120.00351 * 2 1 3 29 29 H 1.09007 * 109.46884 * 60.00207 * 3 2 1 30 30 H 1.08995 * 109.47237 * 300.00209 * 3 2 1 31 31 H 0.96995 * 119.99118 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47458 * 150.00217 * 13 4 3 33 33 H 1.08996 * 109.47277 * 29.99359 * 13 4 3 34 34 H 1.09010 * 109.46892 * 60.00066 * 14 13 4 35 35 H 1.08999 * 109.47598 * 300.00230 * 14 13 4 36 36 H 0.97000 * 119.99550 * 359.97438 * 15 14 13 37 37 H 1.07997 * 120.06577 * 359.95077 * 19 18 16 38 38 H 1.07998 * 119.90284 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.93097 * 179.70012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1893 1.3327 1.1818 6 1 3.8170 0.6874 1.9636 7 6 5.3614 2.0512 1.3742 8 7 5.6021 3.1238 0.6503 9 14 6.5968 1.4957 2.6604 10 1 7.0657 0.1244 2.3369 11 1 7.7549 2.4253 2.6684 12 1 5.9523 1.4957 3.9983 13 6 4.2381 1.5596 -1.2624 14 6 4.4934 0.1641 -1.8353 15 7 5.2259 0.2813 -3.0986 16 6 5.5626 -0.8269 -3.7878 17 8 5.2589 -1.9234 -3.3610 18 6 6.3038 -0.7084 -5.0650 19 6 6.6527 -1.8536 -5.7798 20 7 7.3131 -1.7427 -6.9183 21 6 7.6422 -0.5489 -7.3794 22 6 7.3011 0.5921 -6.6679 23 7 6.6372 0.4908 -5.5338 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6768 1.9563 -0.8899 31 1 6.4209 3.6260 0.7851 32 1 5.1905 2.0591 -1.0847 33 1 3.6494 2.1415 -1.9715 34 1 3.5409 -0.3355 -2.0130 35 1 5.0821 -0.4178 -1.1262 36 1 5.4679 1.1567 -3.4394 37 1 6.3838 -2.8294 -5.4032 38 1 8.1818 -0.4615 -8.3108 39 1 7.5764 1.5655 -7.0462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714644188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:35 Heat of formation + Delta-G solvation = 3.862280 kcal Electronic energy + Delta-G solvation = -21192.477901 eV Core-core repulsion = 17941.893881 eV Total energy + Delta-G solvation = -3250.584020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.29227 -40.40355 -38.26216 -36.02089 -35.31891 -34.59932 -32.92735 -32.48959 -29.90701 -27.34514 -26.64501 -25.65108 -24.82428 -22.71376 -22.14319 -21.73117 -19.45898 -18.64701 -18.48538 -17.75852 -17.06531 -16.83178 -16.66227 -16.01105 -15.99219 -15.69210 -15.35621 -15.03061 -14.66407 -14.32810 -14.28958 -13.86947 -13.34416 -13.09352 -12.93440 -12.80277 -12.64343 -12.52710 -12.42974 -12.25095 -12.04973 -11.87739 -11.71402 -11.58172 -11.28315 -10.58701 -10.53213 -10.22838 -10.09439 -8.60286 -7.86798 -5.49905 -0.70120 -0.03346 1.43623 1.47388 1.53123 1.59779 1.93587 2.48805 2.69970 2.89423 3.16287 3.21421 3.36537 3.66669 3.83166 4.07495 4.20916 4.29172 4.33685 4.36065 4.51352 4.52290 4.67965 4.70370 4.84804 4.99074 5.13048 5.21899 5.24410 5.26053 5.30770 5.43952 5.62574 5.64033 5.71828 6.02524 6.35446 6.45078 6.63022 7.01007 7.14249 7.81244 8.33810 9.09135 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.004560 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.945814 B = 6138.832360 C = 7210.434923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.273 4.273 6 H 0.053 0.947 7 C -0.027 4.027 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.273 1.273 13 C 0.146 3.854 14 C 0.117 3.883 15 N -0.692 5.692 16 C 0.564 3.436 17 O -0.570 6.570 18 C 0.012 3.988 19 C 0.101 3.899 20 N -0.458 5.458 21 C 0.088 3.912 22 C 0.059 3.941 23 N -0.432 5.432 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.254 0.746 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.036 0.964 36 H 0.415 0.585 37 H 0.179 0.821 38 H 0.224 0.776 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -3.168 -16.352 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.403 4.403 6 H 0.071 0.929 7 C -0.225 4.225 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.198 1.198 13 C 0.018 3.982 14 C -0.009 4.009 15 N -0.342 5.342 16 C 0.349 3.651 17 O -0.450 6.450 18 C -0.127 4.127 19 C -0.056 4.056 20 N -0.172 5.172 21 C -0.075 4.075 22 C -0.105 4.105 23 N -0.150 5.150 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.252 0.748 37 H 0.196 0.804 38 H 0.240 0.760 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.193 -3.813 -15.915 16.409 hybrid contribution 0.848 0.111 0.848 1.204 sum 2.041 -3.702 -15.067 15.649 Atomic orbital electron populations 1.21655 0.94245 1.01797 1.01984 1.22018 0.96431 0.98708 1.00332 1.21059 0.83245 0.94610 0.99092 1.43824 1.00886 1.85078 1.01859 1.19144 1.06373 1.20063 0.94722 0.92897 1.25759 1.02078 0.94650 0.99988 1.70082 1.25963 1.15499 1.43813 0.85620 0.79106 0.77402 0.80023 1.21278 1.21445 1.19837 1.20900 0.99254 0.91735 0.86284 1.22082 0.94525 1.01372 0.82907 1.45863 1.55850 1.09540 1.22963 1.18132 0.79087 0.84345 0.83550 1.90758 1.56634 1.27465 1.70101 1.21834 1.01878 0.92035 0.96944 1.23770 0.91816 0.99860 0.90197 1.68706 1.09219 1.28195 1.11075 1.24956 0.93836 0.87572 1.01097 1.24684 0.93091 1.03161 0.89588 1.68341 1.08187 1.24859 1.13578 0.92232 0.92574 0.92141 0.93589 0.94180 0.94551 0.93294 0.93671 0.90904 0.93794 0.92661 0.94553 0.74782 0.80441 0.75957 0.76284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.14 -4.88 6.23 30.59 0.19 -4.69 16 3 C 0.15 6.00 5.72 86.38 0.49 6.50 16 4 N -0.60 -29.19 2.43 -701.99 -1.71 -30.90 16 5 C -0.27 -14.84 9.45 84.03 0.79 -14.05 16 6 H 0.05 2.91 7.92 -2.91 -0.02 2.89 16 7 C -0.03 -1.45 4.95 84.86 0.42 -1.03 16 8 N -0.91 -51.48 11.47 21.66 0.25 -51.23 16 9 Si 0.95 44.54 29.60 68.60 2.03 46.58 16 10 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 C 0.15 6.60 5.45 86.38 0.47 7.07 16 14 C 0.12 4.91 6.00 86.38 0.52 5.43 16 15 N -0.69 -24.94 5.55 -465.66 -2.58 -27.53 16 16 C 0.56 20.14 7.81 86.88 0.68 20.82 16 17 O -0.57 -23.68 16.35 -3.79 -0.06 -23.75 16 18 C 0.01 0.33 6.75 41.89 0.28 0.62 16 19 C 0.10 2.54 10.77 84.94 0.92 3.46 16 20 N -0.46 -9.43 10.49 -194.13 -2.04 -11.47 16 21 C 0.09 1.12 11.23 84.76 0.95 2.07 16 22 C 0.06 0.83 11.22 84.82 0.95 1.78 16 23 N -0.43 -10.29 9.71 -184.34 -1.79 -12.08 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.71 6.64 -2.39 -0.02 1.69 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.55 8.08 -2.38 -0.02 1.53 16 30 H 0.05 1.86 7.83 -2.39 -0.02 1.84 16 31 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.07 3.75 5.52 -2.39 -0.01 3.74 16 33 H 0.04 1.84 7.86 -2.39 -0.02 1.82 16 34 H 0.06 2.31 6.64 -2.38 -0.02 2.30 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.42 13.58 7.82 -92.71 -0.73 12.86 16 37 H 0.18 4.40 7.65 -2.91 -0.02 4.38 16 38 H 0.22 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.22 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -68.99 333.54 1.81 -67.17 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.33 Total: 18.36 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 7.38 Total: 24.84 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -7.87 Total: -133.20 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.06 Total: -23.75 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.99 1.81 -67.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714644188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.036 kcal (2) G-P(sol) polarization free energy of solvation -68.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds