Wall clock time and date at job start Mon Mar 30 2020 23:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30492 * 125.65020 * 2 1 4 4 C 1.34124 * 109.25634 * 180.29254 * 3 2 1 5 5 C 1.34666 * 108.02152 * 359.71979 * 4 3 2 6 6 N 1.35041 * 125.64782 * 179.82034 * 2 1 3 7 7 C 1.46497 * 126.40128 * 359.97438 * 6 2 1 8 8 C 1.50707 * 109.47228 * 84.71367 * 7 6 2 9 9 O 1.21285 * 119.99597 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99907 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99727 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47069 * 179.97438 * 11 10 8 13 13 C 1.53493 * 114.20603 * 174.99847 * 12 11 10 14 14 N 1.47061 * 87.98373 * 87.52202 * 13 12 11 15 15 C 1.36939 * 136.05528 * 206.86521 * 14 13 12 16 16 H 1.07998 * 120.00232 * 6.90648 * 15 14 13 17 17 C 1.38820 * 119.99914 * 186.91245 * 15 14 13 18 18 N 1.31623 * 119.99962 * 7.45320 * 17 15 14 19 19 Si 1.86800 * 119.99890 * 187.45628 * 17 15 14 20 20 H 1.48508 * 109.46943 * 94.79809 * 19 17 15 21 21 H 1.48498 * 109.46995 * 214.79830 * 19 17 15 22 22 H 1.48493 * 109.47191 * 334.80093 * 19 17 15 23 23 C 1.47065 * 87.88903 * 27.11877 * 14 13 12 24 24 H 1.09006 * 109.47053 * 270.17311 * 1 2 3 25 25 H 1.08992 * 109.47078 * 30.17456 * 1 2 3 26 26 H 1.09007 * 109.46966 * 150.17878 * 1 2 3 27 27 H 1.08002 * 125.99214 * 179.72791 * 4 3 2 28 28 H 1.08000 * 126.59208 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47041 * 324.71284 * 7 6 2 30 30 H 1.09003 * 109.47294 * 204.71311 * 7 6 2 31 31 H 0.97002 * 120.00114 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47124 * 59.99733 * 11 10 8 33 33 H 1.08998 * 109.46810 * 299.99540 * 11 10 8 34 34 H 1.09002 * 113.27669 * 41.93396 * 12 11 10 35 35 H 1.09000 * 113.46649 * 332.73968 * 13 12 11 36 36 H 1.09002 * 113.52161 * 202.31207 * 13 12 11 37 37 H 0.96998 * 119.99690 * 180.02562 * 18 17 15 38 38 H 1.09000 * 113.46872 * 87.65805 * 23 14 13 39 39 H 1.08999 * 113.46957 * 218.09845 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0065 5 6 3.5926 -0.6643 -0.0044 6 7 2.2940 -1.0974 0.0034 7 6 1.8425 -2.4910 0.0083 8 6 1.5627 -2.9334 -1.4049 9 8 1.7240 -2.1604 -2.3254 10 7 1.1321 -4.1876 -1.6456 11 6 0.8595 -4.6175 -3.0194 12 6 0.3881 -6.0730 -3.0143 13 6 -0.0448 -6.5992 -4.3897 14 7 1.3574 -6.9710 -4.6311 15 6 2.1600 -7.1315 -5.7290 16 1 1.7950 -6.8612 -6.7088 17 6 3.4426 -7.6418 -5.5824 18 7 3.8363 -8.1077 -4.4160 19 14 4.6099 -7.6673 -7.0406 20 1 5.4665 -6.4546 -7.0102 21 1 5.4649 -8.8793 -6.9691 22 1 3.8261 -7.6882 -8.3017 23 6 1.5168 -7.1007 -3.1748 24 1 -0.3633 0.0031 1.0277 25 1 -0.3633 0.8883 -0.5165 26 1 -0.3633 -0.8916 -0.5111 27 1 4.4098 1.3410 -0.0122 28 1 4.4776 -1.2832 -0.0086 29 1 0.9328 -2.5761 0.6026 30 1 2.6188 -3.1229 0.4399 31 1 1.0027 -4.8057 -0.9093 32 1 1.7691 -4.5326 -3.6139 33 1 0.0833 -3.9853 -3.4506 34 1 -0.3126 -6.2960 -2.2097 35 1 -0.4082 -5.8188 -5.0583 36 1 -0.7177 -7.4550 -4.3360 37 1 4.7327 -8.4639 -4.3136 38 1 1.2600 -8.0902 -2.7965 39 1 2.4812 -6.7468 -2.8105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714982406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:36 Heat of formation + Delta-G solvation = 61.282797 kcal Electronic energy + Delta-G solvation = -21249.012374 eV Core-core repulsion = 18000.918294 eV Total energy + Delta-G solvation = -3248.094080 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.08714 -40.86537 -39.80235 -35.77311 -34.98614 -34.23129 -32.61924 -30.77248 -29.22520 -27.78137 -27.00873 -26.34586 -24.29478 -22.42283 -22.02184 -20.96687 -20.24902 -18.77683 -18.31934 -18.18335 -17.14068 -16.85700 -16.58411 -16.20306 -15.77588 -15.52503 -15.25548 -14.70641 -14.65664 -14.40353 -14.20167 -13.92182 -13.45912 -13.42959 -13.20890 -13.18616 -13.01821 -12.80627 -12.62908 -12.26613 -11.84916 -11.64738 -11.46836 -11.06331 -10.99241 -10.88666 -10.47504 -10.12742 -9.26978 -8.92514 -7.96484 -5.25614 0.97718 1.41505 1.43622 1.47666 1.51434 1.71910 2.17834 2.27435 2.44607 3.28131 3.47781 3.58626 3.61862 3.71640 3.78750 3.93230 3.96951 4.14351 4.44618 4.51989 4.56667 4.61726 4.72207 4.78753 4.85242 4.90163 4.97461 5.03021 5.07418 5.22802 5.30985 5.34837 5.49802 5.61922 5.82641 5.91804 6.19738 6.52117 6.89934 7.13844 7.17981 7.57998 8.59551 9.22483 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022781 B = 0.003720 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.822511 B = 7524.828789 C = 8221.025797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.204 3.796 3 N -0.535 5.535 4 C -0.055 4.055 5 C -0.055 4.055 6 N -0.446 5.446 7 C 0.089 3.911 8 C 0.490 3.510 9 O -0.581 6.581 10 N -0.702 5.702 11 C 0.162 3.838 12 C -0.120 4.120 13 C 0.121 3.879 14 N -0.644 5.644 15 C -0.229 4.229 16 H 0.080 0.920 17 C -0.064 4.064 18 N -0.950 5.950 19 Si 0.971 3.029 20 H -0.292 1.292 21 H -0.291 1.291 22 H -0.267 1.267 23 C 0.163 3.837 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.182 0.818 28 H 0.196 0.804 29 H 0.166 0.834 30 H 0.156 0.844 31 H 0.421 0.579 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.248 0.752 38 H 0.025 0.975 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.440 9.064 15.265 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.059 4.059 3 N -0.256 5.256 4 C -0.201 4.201 5 C -0.187 4.187 6 N -0.129 5.129 7 C -0.036 4.036 8 C 0.276 3.724 9 O -0.461 6.461 10 N -0.355 5.355 11 C 0.038 3.962 12 C -0.139 4.139 13 C -0.005 4.005 14 N -0.371 5.371 15 C -0.357 4.357 16 H 0.098 0.902 17 C -0.257 4.257 18 N -0.599 5.599 19 Si 0.799 3.201 20 H -0.219 1.219 21 H -0.218 1.218 22 H -0.192 1.192 23 C 0.037 3.963 24 H 0.125 0.875 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.199 0.801 28 H 0.213 0.787 29 H 0.183 0.817 30 H 0.174 0.826 31 H 0.259 0.741 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.373 10.172 14.412 19.527 hybrid contribution 1.537 -1.495 -0.956 2.347 sum -6.836 8.677 13.457 17.410 Atomic orbital electron populations 1.20300 0.82984 1.04301 1.04851 1.23879 0.97003 0.81265 1.03707 1.70178 1.03360 1.29755 1.22275 1.22619 0.94905 0.93851 1.08745 1.23107 0.87785 0.97043 1.10754 1.45032 1.06567 1.06921 1.54349 1.22012 1.07318 0.80568 0.93744 1.21390 0.76773 0.82116 0.92165 1.90797 1.53187 1.54513 1.47580 1.45752 1.66890 1.12947 1.09876 1.20681 0.99336 0.93613 0.82586 1.22988 0.98896 0.92809 0.99229 1.22605 0.87010 0.97085 0.93773 1.46116 1.07494 1.80610 1.02879 1.19309 0.94395 1.34794 0.87208 0.90216 1.25549 0.99606 1.00833 0.99721 1.69990 1.18497 1.46990 1.24435 0.85170 0.78946 0.76614 0.79331 1.21942 1.21797 1.19178 1.22024 0.95618 0.94667 0.83966 0.87454 0.89733 0.90269 0.80071 0.78745 0.81684 0.82646 0.74068 0.95276 0.91385 0.85433 0.93305 0.92738 0.94322 0.95754 0.95446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.04 71.24 0.72 -0.40 16 2 C 0.20 5.15 7.88 138.13 1.09 6.24 16 3 N -0.54 -16.20 11.25 -188.14 -2.12 -18.31 16 4 C -0.05 -1.47 11.87 83.52 0.99 -0.48 16 5 C -0.05 -1.29 11.58 83.09 0.96 -0.32 16 6 N -0.45 -9.94 2.24 -518.34 -1.16 -11.11 16 7 C 0.09 1.27 6.16 85.64 0.53 1.80 16 8 C 0.49 11.96 7.90 87.66 0.69 12.65 16 9 O -0.58 -21.49 16.42 -3.05 -0.05 -21.54 16 10 N -0.70 -15.34 5.56 -463.04 -2.57 -17.91 16 11 C 0.16 5.01 5.50 86.38 0.47 5.48 16 12 C -0.12 -3.57 4.18 -10.46 -0.04 -3.61 16 13 C 0.12 4.39 8.26 83.18 0.69 5.08 16 14 N -0.64 -31.87 3.60 -738.48 -2.66 -34.53 16 15 C -0.23 -12.85 10.73 84.04 0.90 -11.95 16 16 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 17 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 18 N -0.95 -56.93 11.86 21.65 0.26 -56.67 16 19 Si 0.97 46.37 29.56 68.60 2.03 48.39 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 C 0.16 6.98 6.70 83.18 0.56 7.54 16 24 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.19 7.84 -2.38 -0.02 1.17 16 27 H 0.18 3.93 8.06 -2.91 -0.02 3.90 16 28 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 29 H 0.17 0.90 7.94 -2.39 -0.02 0.89 16 30 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.42 5.64 8.47 -92.71 -0.79 4.85 16 32 H 0.03 1.23 7.91 -2.39 -0.02 1.21 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.05 1.71 8.12 -2.39 -0.02 1.69 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 39 H 0.03 1.33 7.61 -2.39 -0.02 1.31 16 Total: -1.00 -84.83 335.24 2.01 -82.82 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.26 Total: 10.02 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 8.02 Total: 18.83 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -8.25 Total: -138.53 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -84.83 2.01 -82.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714982406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.107 kcal (2) G-P(sol) polarization free energy of solvation -84.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds