Wall clock time and date at job start Tue Mar 31 2020 00:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47034 * 2 1 4 4 C 1.53006 * 109.47104 * 119.99338 * 2 1 3 5 5 H 1.08994 * 109.47567 * 300.00472 * 4 2 1 6 6 C 1.52995 * 109.47104 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21477 * 120.00159 * 359.97438 * 8 7 6 10 10 C 1.48536 * 120.00422 * 180.02562 * 8 7 6 11 11 N 1.32463 * 119.18340 * 359.73354 * 10 8 7 12 12 C 1.32111 * 120.77032 * 179.76199 * 11 10 8 13 13 C 1.38808 * 119.16091 * 0.49686 * 12 11 10 14 14 C 1.38800 * 118.50483 * 359.75431 * 13 12 11 15 15 N 1.32112 * 119.16560 * 359.97438 * 14 13 12 16 16 N 1.46505 * 109.46692 * 60.00395 * 4 2 1 17 17 C 1.36931 * 119.99788 * 274.99780 * 16 4 2 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 4 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 4 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 H 1.09002 * 109.47452 * 300.00278 * 1 2 3 26 26 H 1.09001 * 109.46956 * 60.00206 * 1 2 3 27 27 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47294 * 239.99977 * 2 1 3 29 29 H 1.08995 * 109.46796 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46647 * 300.00002 * 3 2 1 31 31 H 1.08994 * 109.47099 * 59.99857 * 3 2 1 32 32 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 33 33 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 34 34 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 35 35 H 1.07995 * 120.42014 * 180.25864 * 12 11 10 36 36 H 1.07997 * 120.74602 * 179.77205 * 13 12 11 37 37 H 1.08003 * 120.41622 * 180.02562 * 14 13 12 38 38 H 0.97000 * 119.99792 * 94.99575 * 16 4 2 39 39 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 7 4.0583 -1.5139 2.3805 8 6 5.3832 -1.6552 2.5823 9 8 6.1727 -1.1260 1.8258 10 6 5.8784 -2.4588 3.7292 11 7 5.0033 -3.0252 4.5466 12 6 5.4090 -3.7504 5.5737 13 6 6.7703 -3.9061 5.7960 14 6 7.6585 -3.2943 4.9223 15 7 7.1839 -2.5875 3.9121 16 7 1.5516 -2.1024 1.2494 17 6 0.3101 -2.3896 1.7505 18 1 -0.3093 -1.5979 2.1454 19 6 -0.1549 -3.6976 1.7453 20 7 0.5998 -4.6623 1.2636 21 14 -1.8517 -4.0883 2.4219 22 1 -2.4937 -2.8377 2.9006 23 1 -2.6838 -4.6943 1.3516 24 1 -1.7260 -5.0436 3.5519 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.9329 -1.1563 0.3177 33 1 3.9337 0.3019 1.3384 34 1 3.4279 -1.9367 2.9844 35 1 4.6907 -4.2130 6.2341 36 1 7.1302 -4.4904 6.6299 37 1 8.7241 -3.3954 5.0660 38 1 2.1078 -2.8134 0.8944 39 1 0.2749 -5.5764 1.2603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715674140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:58 Heat of formation + Delta-G solvation = 22.219429 kcal Electronic energy + Delta-G solvation = -21574.112741 eV Core-core repulsion = 18324.324746 eV Total energy + Delta-G solvation = -3249.787995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19974 -39.03729 -37.17707 -34.27886 -33.49881 -33.09210 -32.30602 -30.35150 -28.19790 -26.18096 -25.32606 -24.61274 -23.54913 -21.92532 -20.58488 -19.43047 -18.24334 -17.63366 -17.07584 -16.08449 -15.57670 -15.49430 -15.09216 -14.97118 -14.17308 -13.93823 -13.72048 -13.69222 -13.40865 -13.21170 -12.75511 -12.16390 -12.00508 -11.60512 -11.31465 -11.04277 -11.01237 -10.94510 -10.80974 -10.63366 -10.27938 -10.06499 -9.95996 -9.85133 -9.77837 -9.52019 -9.37950 -8.90341 -8.62730 -7.00160 -5.78932 -3.07933 0.40706 0.96423 2.81737 3.03770 3.40638 3.47201 3.48939 3.89025 3.94005 4.36850 4.42557 4.56184 4.77972 4.88560 5.18752 5.35677 5.39995 5.54676 5.56580 5.65476 5.77558 5.91244 6.01032 6.11281 6.19508 6.26244 6.39826 6.46162 6.55159 6.64732 6.67772 6.80246 6.89654 7.09166 7.31736 7.67588 7.69759 8.03913 8.37739 8.47581 9.50084 10.04783 10.40667 11.42935 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.005643 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.272464 B = 4960.384470 C = 6649.949096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.055 0.945 6 C 0.112 3.888 7 N -0.686 5.686 8 C 0.577 3.423 9 O -0.521 6.521 10 C 0.289 3.711 11 N -0.483 5.483 12 C 0.148 3.852 13 C -0.215 4.215 14 C 0.141 3.859 15 N -0.472 5.472 16 N -0.721 5.721 17 C -0.234 4.234 18 H 0.074 0.926 19 C -0.011 4.011 20 N -0.928 5.928 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.422 0.578 35 H 0.176 0.824 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.385 0.615 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 4.312 7.869 13.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.073 0.927 6 C -0.012 4.012 7 N -0.339 5.339 8 C 0.358 3.642 9 O -0.395 6.395 10 C 0.019 3.981 11 N -0.199 5.199 12 C -0.019 4.019 13 C -0.237 4.237 14 C -0.026 4.026 15 N -0.187 5.187 16 N -0.362 5.362 17 C -0.365 4.365 18 H 0.092 0.908 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.260 0.740 35 H 0.193 0.807 36 H 0.170 0.830 37 H 0.191 0.809 38 H 0.219 0.781 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.571 5.256 6.600 12.759 hybrid contribution -0.745 -1.438 1.322 2.090 sum 8.826 3.817 7.921 12.459 Atomic orbital electron populations 1.21817 0.94899 1.03924 0.98994 1.21730 0.96953 0.94401 0.99995 1.21949 1.00522 0.97324 1.00952 1.20554 0.89019 0.88342 0.96160 0.92697 1.21870 0.95994 0.94840 0.88496 1.45825 1.05887 1.51498 1.30674 1.17252 0.83258 0.80702 0.83023 1.90769 1.55714 1.47565 1.45437 1.23053 0.85962 0.94460 0.94598 1.68427 1.39603 1.07851 1.04058 1.23373 0.94673 0.91216 0.92591 1.23171 0.95921 1.02271 1.02358 1.23353 1.01290 0.89656 0.88281 1.68255 1.15369 1.15357 1.19744 1.42462 1.18151 1.01813 1.73775 1.19232 0.92610 0.92427 1.32259 0.90839 1.24722 0.98227 0.95910 1.01840 1.69677 1.36661 0.99830 1.51446 0.86201 0.84387 0.77909 0.78187 1.20555 1.22012 1.22010 0.94052 0.94991 0.89478 0.91811 0.93001 0.93542 0.93170 0.91442 0.91158 0.73955 0.80698 0.83007 0.80919 0.78076 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.26 37.16 0.31 -2.18 16 2 C -0.11 -1.86 2.69 -90.61 -0.24 -2.10 16 3 C -0.15 -2.10 8.84 37.16 0.33 -1.77 16 4 C 0.17 3.15 2.18 -67.93 -0.15 3.01 16 5 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 6 C 0.11 1.96 4.73 -4.04 -0.02 1.94 16 7 N -0.69 -12.49 5.38 -61.03 -0.33 -12.82 16 8 C 0.58 10.93 7.85 -12.02 -0.09 10.83 16 9 O -0.52 -11.01 16.86 5.39 0.09 -10.92 16 10 C 0.29 4.93 7.60 -157.08 -1.19 3.73 16 11 N -0.48 -7.48 9.58 -11.12 -0.11 -7.59 16 12 C 0.15 1.65 11.30 -17.22 -0.19 1.46 16 13 C -0.22 -1.87 10.18 -39.16 -0.40 -2.27 16 14 C 0.14 1.49 11.30 -17.22 -0.19 1.30 16 15 N -0.47 -7.36 10.13 -11.12 -0.11 -7.48 16 16 N -0.72 -16.50 4.44 -53.42 -0.24 -16.74 16 17 C -0.23 -5.93 7.57 -15.06 -0.11 -6.05 16 18 H 0.07 1.83 7.39 -52.49 -0.39 1.44 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 21 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.69 6.54 -51.93 -0.34 0.35 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.13 6.71 -51.93 -0.35 0.78 16 34 H 0.42 8.01 7.44 -40.82 -0.30 7.70 16 35 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.17 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.39 9.74 7.80 -40.82 -0.32 9.42 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -31.72 329.64 -7.46 -39.18 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.37 Total: 13.52 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -2.06 Total: 7.50 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -0.06 Total: -70.72 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.72 -7.46 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715674140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.395 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds