Wall clock time and date at job start Tue Mar 31 2020 00:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47034 * 2 1 4 4 C 1.53006 * 109.47104 * 119.99338 * 2 1 3 5 5 H 1.08994 * 109.47567 * 300.00472 * 4 2 1 6 6 C 1.52995 * 109.47104 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21477 * 120.00159 * 359.97438 * 8 7 6 10 10 C 1.48536 * 120.00422 * 180.02562 * 8 7 6 11 11 N 1.32463 * 119.18340 * 359.73354 * 10 8 7 12 12 C 1.32111 * 120.77032 * 179.76199 * 11 10 8 13 13 C 1.38808 * 119.16091 * 0.49686 * 12 11 10 14 14 C 1.38800 * 118.50483 * 359.75431 * 13 12 11 15 15 N 1.32112 * 119.16560 * 359.97438 * 14 13 12 16 16 N 1.46505 * 109.46692 * 60.00395 * 4 2 1 17 17 C 1.36931 * 119.99788 * 274.99780 * 16 4 2 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 4 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 4 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 H 1.09002 * 109.47452 * 300.00278 * 1 2 3 26 26 H 1.09001 * 109.46956 * 60.00206 * 1 2 3 27 27 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47294 * 239.99977 * 2 1 3 29 29 H 1.08995 * 109.46796 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46647 * 300.00002 * 3 2 1 31 31 H 1.08994 * 109.47099 * 59.99857 * 3 2 1 32 32 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 33 33 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 34 34 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 35 35 H 1.07995 * 120.42014 * 180.25864 * 12 11 10 36 36 H 1.07997 * 120.74602 * 179.77205 * 13 12 11 37 37 H 1.08003 * 120.41622 * 180.02562 * 14 13 12 38 38 H 0.97000 * 119.99792 * 94.99575 * 16 4 2 39 39 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 7 4.0583 -1.5139 2.3805 8 6 5.3832 -1.6552 2.5823 9 8 6.1727 -1.1260 1.8258 10 6 5.8784 -2.4588 3.7292 11 7 5.0033 -3.0252 4.5466 12 6 5.4090 -3.7504 5.5737 13 6 6.7703 -3.9061 5.7960 14 6 7.6585 -3.2943 4.9223 15 7 7.1839 -2.5875 3.9121 16 7 1.5516 -2.1024 1.2494 17 6 0.3101 -2.3896 1.7505 18 1 -0.3093 -1.5979 2.1454 19 6 -0.1549 -3.6976 1.7453 20 7 0.5998 -4.6623 1.2636 21 14 -1.8517 -4.0883 2.4219 22 1 -2.4937 -2.8377 2.9006 23 1 -2.6838 -4.6943 1.3516 24 1 -1.7260 -5.0436 3.5519 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.9329 -1.1563 0.3177 33 1 3.9337 0.3019 1.3384 34 1 3.4279 -1.9367 2.9844 35 1 4.6907 -4.2130 6.2341 36 1 7.1302 -4.4904 6.6299 37 1 8.7241 -3.3954 5.0660 38 1 2.1078 -2.8134 0.8944 39 1 0.2749 -5.5764 1.2603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715674140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:58 Heat of formation + Delta-G solvation = -0.963918 kcal Electronic energy + Delta-G solvation = -21575.118046 eV Core-core repulsion = 18324.324746 eV Total energy + Delta-G solvation = -3250.793300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.22486 -40.43689 -38.72151 -35.58017 -34.91942 -34.65935 -33.27048 -32.13042 -29.73441 -27.50450 -26.63818 -25.57425 -25.21549 -23.39262 -21.94904 -20.85932 -19.64683 -18.88657 -18.63992 -17.05887 -16.99853 -16.85691 -16.57910 -16.06390 -15.75050 -15.33709 -15.19568 -14.92072 -14.81478 -14.48772 -14.23216 -13.78119 -13.41749 -12.89015 -12.86256 -12.70469 -12.46059 -12.32425 -12.22896 -12.04744 -11.94813 -11.75911 -11.44728 -11.27397 -11.19853 -10.81112 -10.74627 -10.36610 -10.09093 -8.94114 -7.84940 -5.12204 -0.59493 0.09889 1.50337 1.52177 1.56027 1.60355 1.79421 2.61419 2.81527 2.92587 3.31054 3.49010 3.66440 3.85436 3.91137 3.93601 4.10870 4.30560 4.32379 4.38553 4.44627 4.64087 4.74744 4.77654 4.94490 4.99047 5.06650 5.17222 5.27123 5.29954 5.30932 5.46953 5.62265 5.67252 5.79694 5.92057 6.34435 6.35229 6.87049 7.06712 7.42341 8.13072 8.38507 9.38294 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.005643 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.272464 B = 4960.384470 C = 6649.949096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.172 3.828 5 H 0.058 0.942 6 C 0.119 3.881 7 N -0.686 5.686 8 C 0.573 3.427 9 O -0.554 6.554 10 C 0.256 3.744 11 N -0.511 5.511 12 C 0.129 3.871 13 C -0.177 4.177 14 C 0.130 3.870 15 N -0.504 5.504 16 N -0.727 5.727 17 C -0.212 4.212 18 H 0.081 0.919 19 C -0.073 4.073 20 N -0.968 5.968 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.302 1.302 24 H -0.298 1.298 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.418 0.582 35 H 0.206 0.794 36 H 0.206 0.794 37 H 0.215 0.785 38 H 0.371 0.629 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.106 4.996 9.778 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.063 3.937 5 H 0.076 0.924 6 C -0.005 4.005 7 N -0.337 5.337 8 C 0.356 3.644 9 O -0.431 6.431 10 C -0.013 4.013 11 N -0.228 5.228 12 C -0.036 4.036 13 C -0.198 4.198 14 C -0.035 4.035 15 N -0.220 5.220 16 N -0.367 5.367 17 C -0.344 4.344 18 H 0.098 0.902 19 C -0.265 4.265 20 N -0.620 5.620 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.230 1.230 24 H -0.226 1.226 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.223 0.777 36 H 0.223 0.777 37 H 0.231 0.769 38 H 0.203 0.797 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.125 5.994 8.532 14.535 hybrid contribution -0.822 -1.639 0.828 2.012 sum 9.303 4.355 9.360 13.897 Atomic orbital electron populations 1.21729 0.95297 1.01794 1.00346 1.21617 0.96494 0.96317 0.98245 1.21862 1.00959 0.94846 1.02252 1.20703 0.89648 0.86239 0.97063 0.92427 1.21820 0.95035 0.95665 0.87995 1.45823 1.05897 1.51459 1.30543 1.17666 0.82947 0.80377 0.83458 1.90720 1.56298 1.49155 1.46940 1.22484 0.86928 0.96656 0.95270 1.68336 1.40149 1.08968 1.05345 1.24071 0.96946 0.90729 0.91903 1.23705 0.94289 0.99699 1.02101 1.24167 1.03569 0.88587 0.87178 1.68185 1.14794 1.16992 1.22043 1.42578 1.17351 1.03307 1.73468 1.19516 0.92980 0.92203 1.29673 0.90163 1.25374 1.01339 0.96185 1.03625 1.69830 1.38278 0.99712 1.54152 0.85262 0.80915 0.77816 0.76944 1.18991 1.23012 1.22618 0.93429 0.92927 0.93200 0.92983 0.92286 0.91941 0.92182 0.92624 0.89320 0.74457 0.77734 0.77725 0.76900 0.79721 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.26 71.98 0.59 -4.06 16 2 C -0.11 -3.48 2.69 -10.79 -0.03 -3.51 16 3 C -0.14 -3.63 8.84 71.99 0.64 -3.00 16 4 C 0.17 6.38 2.18 44.99 0.10 6.48 16 5 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 6 C 0.12 4.19 4.73 86.38 0.41 4.60 16 7 N -0.69 -25.77 5.38 -465.30 -2.50 -28.27 16 8 C 0.57 22.53 7.85 86.99 0.68 23.21 16 9 O -0.55 -24.32 16.86 -3.64 -0.06 -24.38 16 10 C 0.26 8.88 7.60 137.68 1.05 9.93 16 11 N -0.51 -15.78 9.58 -189.09 -1.81 -17.59 16 12 C 0.13 2.59 11.30 84.79 0.96 3.55 16 13 C -0.18 -2.38 10.18 22.54 0.23 -2.16 16 14 C 0.13 2.41 11.30 84.79 0.96 3.36 16 15 N -0.50 -15.53 10.13 -189.10 -1.92 -17.45 16 16 N -0.73 -33.95 4.44 -322.93 -1.43 -35.38 16 17 C -0.21 -10.81 7.57 84.04 0.64 -10.17 16 18 H 0.08 3.94 7.39 -2.91 -0.02 3.92 16 19 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 20 N -0.97 -57.64 13.06 21.65 0.28 -57.36 16 21 Si 0.96 44.82 29.55 68.60 2.03 46.85 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 2.10 6.01 -2.39 -0.01 2.09 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.44 6.54 -2.39 -0.02 1.43 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.09 2.81 6.71 -2.39 -0.02 2.79 16 34 H 0.42 16.41 7.44 -92.71 -0.69 15.72 16 35 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 36 H 0.21 0.57 8.06 -2.91 -0.02 0.55 16 37 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.37 19.46 7.80 -92.71 -0.72 18.74 16 39 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -72.44 329.64 0.94 -71.50 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -0.34 Total: 37.39 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 6.69 Total: 24.69 kcal Atomic # 7 Polarization: -148.68 SS G_CDS: -7.38 Total: -156.05 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -72.44 0.94 -71.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715674140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.539 kcal (2) G-P(sol) polarization free energy of solvation -72.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds