Wall clock time and date at job start Tue Mar 31 2020 00:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21467 * 120.00421 * 0.02562 * 8 7 6 10 10 C 1.48540 * 119.99640 * 180.02562 * 8 7 6 11 11 N 1.32465 * 119.18567 * 359.73003 * 10 8 7 12 12 C 1.32108 * 120.76774 * 179.76285 * 11 10 8 13 13 C 1.38806 * 119.16329 * 0.50234 * 12 11 10 14 14 C 1.38799 * 118.50664 * 359.75095 * 13 12 11 15 15 N 1.32117 * 119.16317 * 0.02562 * 14 13 12 16 16 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 17 17 C 1.36935 * 120.00239 * 84.99640 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 26 26 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 27 27 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 29 29 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 31 31 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 32 32 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 33 33 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 34 34 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 35 35 H 1.07997 * 120.41688 * 180.25816 * 12 11 10 36 36 H 1.07997 * 120.74567 * 179.77271 * 13 12 11 37 37 H 1.07994 * 120.42034 * 180.02562 * 14 13 12 38 38 H 0.97004 * 119.99747 * 265.00379 * 16 4 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0429 -4.7522 1.8262 10 6 2.3971 -4.9189 3.7300 11 7 3.2308 -4.2856 4.5416 12 6 3.7715 -4.9072 5.5743 13 6 3.4642 -6.2424 5.7969 14 6 2.5910 -6.8756 4.9234 15 7 2.0829 -6.1925 3.9131 16 7 3.5050 -0.7207 1.2495 17 6 4.1892 0.3542 1.7510 18 1 3.6488 1.2015 2.1466 19 6 5.5773 0.3549 1.7508 20 7 6.2358 -0.6800 1.2736 21 14 6.5107 1.8210 2.4355 22 1 6.7634 2.7991 1.3470 23 1 5.7051 2.4659 3.5033 24 1 7.8056 1.3635 3.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.4437 -2.1651 1.3387 33 1 1.8184 -2.6510 0.3178 34 1 2.7227 -2.4348 2.9848 35 1 4.4473 -4.3842 6.2347 36 1 3.8945 -6.7763 6.6311 37 1 2.3302 -7.9136 5.0677 38 1 3.9903 -1.4819 0.8944 39 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715674142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:02 Heat of formation + Delta-G solvation = 22.662602 kcal Electronic energy + Delta-G solvation = -21622.157945 eV Core-core repulsion = 18372.389168 eV Total energy + Delta-G solvation = -3249.768777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25248 -39.12150 -37.28959 -34.34876 -33.57043 -33.40887 -32.35728 -30.22093 -28.12443 -26.19748 -25.27857 -24.64796 -23.43949 -22.08126 -20.67830 -19.50722 -18.27323 -17.68072 -17.35409 -16.17413 -15.61347 -15.58635 -15.19169 -14.83419 -14.38238 -14.05669 -13.74723 -13.66258 -13.60837 -13.39319 -12.93032 -12.22217 -11.95264 -11.64448 -11.36830 -11.19340 -11.06057 -10.92627 -10.76097 -10.42908 -10.14099 -10.06939 -9.91552 -9.90051 -9.84585 -9.43054 -9.19338 -8.89982 -8.71771 -7.06843 -6.09836 -3.11069 0.35568 0.91774 2.75098 2.96465 3.50506 3.54345 3.68132 3.83285 3.88577 4.31510 4.37568 4.64535 4.73924 4.84314 5.13010 5.27516 5.32125 5.50075 5.52973 5.59935 5.73780 5.82187 5.92542 6.06031 6.11644 6.18279 6.32441 6.38503 6.48310 6.57905 6.60807 6.75371 6.82091 7.01893 7.28047 7.60690 7.81102 7.96458 8.38981 8.74047 9.18771 10.05729 10.20393 11.37333 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.005657 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.511001 B = 4948.112240 C = 6630.258326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.176 3.824 5 H 0.056 0.944 6 C 0.111 3.889 7 N -0.688 5.688 8 C 0.577 3.423 9 O -0.519 6.519 10 C 0.288 3.712 11 N -0.484 5.484 12 C 0.148 3.852 13 C -0.214 4.214 14 C 0.141 3.859 15 N -0.472 5.472 16 N -0.732 5.732 17 C -0.325 4.325 18 H 0.068 0.932 19 C -0.043 4.043 20 N -0.942 5.942 21 Si 1.078 2.922 22 H -0.296 1.296 23 H -0.295 1.295 24 H -0.290 1.290 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.421 0.579 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.174 0.826 38 H 0.368 0.632 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 -7.274 8.089 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.195 4.195 4 C 0.065 3.935 5 H 0.074 0.926 6 C -0.013 4.013 7 N -0.341 5.341 8 C 0.358 3.642 9 O -0.393 6.393 10 C 0.018 3.982 11 N -0.201 5.201 12 C -0.018 4.018 13 C -0.236 4.236 14 C -0.025 4.025 15 N -0.187 5.187 16 N -0.374 5.374 17 C -0.456 4.456 18 H 0.086 0.914 19 C -0.241 4.241 20 N -0.587 5.587 21 Si 0.910 3.090 22 H -0.224 1.224 23 H -0.222 1.222 24 H -0.216 1.216 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.260 0.740 35 H 0.194 0.806 36 H 0.171 0.829 37 H 0.191 0.809 38 H 0.201 0.799 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.070 -6.337 7.134 11.876 hybrid contribution -0.632 -1.138 0.674 1.466 sum -7.702 -7.475 7.808 13.273 Atomic orbital electron populations 1.21947 0.96737 1.01006 1.01041 1.21715 0.93636 0.97914 0.99766 1.21810 1.04272 0.94463 0.98994 1.20485 0.85915 0.90794 0.96289 0.92596 1.21889 0.97661 0.93366 0.88414 1.45840 1.47759 1.09819 1.30713 1.17268 0.81712 0.82196 0.83040 1.90770 1.35268 1.67848 1.45422 1.23026 0.92010 0.88502 0.94681 1.68421 1.07877 1.39641 1.04130 1.23384 0.94209 0.91762 0.92473 1.23181 1.00490 0.97524 1.02388 1.23364 0.90565 1.00380 0.88240 1.68255 1.23146 1.07601 1.19684 1.42462 0.99360 1.20958 1.74654 1.20002 0.91548 0.97188 1.36888 0.91419 1.25673 0.93413 1.03691 1.01287 1.70841 1.37414 1.07054 1.43414 0.83249 0.75778 0.74300 0.75691 1.22431 1.22176 1.21568 0.93110 0.93458 0.93020 0.92004 0.89452 0.94990 0.94016 0.91025 0.91555 0.74030 0.80623 0.82921 0.80855 0.79882 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.84 37.16 0.33 -1.79 16 2 C -0.11 -1.87 2.69 -90.62 -0.24 -2.11 16 3 C -0.14 -2.51 8.26 37.16 0.31 -2.21 16 4 C 0.18 3.30 2.18 -67.93 -0.15 3.15 16 5 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 6 C 0.11 1.94 4.73 -4.04 -0.02 1.92 16 7 N -0.69 -12.50 5.38 -61.03 -0.33 -12.83 16 8 C 0.58 10.88 7.85 -12.01 -0.09 10.79 16 9 O -0.52 -10.94 16.86 5.39 0.09 -10.84 16 10 C 0.29 4.88 7.60 -157.07 -1.19 3.68 16 11 N -0.48 -7.48 9.58 -11.12 -0.11 -7.58 16 12 C 0.15 1.65 11.30 -17.22 -0.19 1.45 16 13 C -0.21 -1.84 10.18 -39.16 -0.40 -2.24 16 14 C 0.14 1.48 11.30 -17.22 -0.19 1.29 16 15 N -0.47 -7.31 10.13 -11.12 -0.11 -7.43 16 16 N -0.73 -16.76 4.44 -53.43 -0.24 -17.00 16 17 C -0.33 -8.35 7.57 -15.06 -0.11 -8.47 16 18 H 0.07 1.73 7.40 -52.48 -0.39 1.34 16 19 C -0.04 -1.17 5.50 -17.43 -0.10 -1.26 16 20 N -0.94 -28.01 13.70 55.49 0.76 -27.25 16 21 Si 1.08 25.06 29.92 -169.99 -5.09 19.97 16 22 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.89 6.01 -51.93 -0.31 1.58 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.16 6.71 -51.92 -0.35 0.81 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.42 8.00 7.44 -40.82 -0.30 7.70 16 35 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.37 9.05 6.63 -40.82 -0.27 8.78 16 39 H 0.26 7.57 6.77 -40.82 -0.28 7.29 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -32.55 327.94 -7.40 -39.95 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.26 Total: 13.88 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.06 Total: 4.19 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -0.02 Total: -72.09 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.09 Total: 19.97 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.55 -7.40 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715674142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.611 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds