Wall clock time and date at job start Tue Mar 31 2020 00:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21467 * 120.00421 * 0.02562 * 8 7 6 10 10 C 1.48540 * 119.99640 * 180.02562 * 8 7 6 11 11 N 1.32465 * 119.18567 * 359.73003 * 10 8 7 12 12 C 1.32108 * 120.76774 * 179.76285 * 11 10 8 13 13 C 1.38806 * 119.16329 * 0.50234 * 12 11 10 14 14 C 1.38799 * 118.50664 * 359.75095 * 13 12 11 15 15 N 1.32117 * 119.16317 * 0.02562 * 14 13 12 16 16 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 17 17 C 1.36935 * 120.00239 * 84.99640 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 26 26 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 27 27 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 29 29 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 31 31 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 32 32 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 33 33 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 34 34 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 35 35 H 1.07997 * 120.41688 * 180.25816 * 12 11 10 36 36 H 1.07997 * 120.74567 * 179.77271 * 13 12 11 37 37 H 1.07994 * 120.42034 * 180.02562 * 14 13 12 38 38 H 0.97004 * 119.99747 * 265.00379 * 16 4 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0429 -4.7522 1.8262 10 6 2.3971 -4.9189 3.7300 11 7 3.2308 -4.2856 4.5416 12 6 3.7715 -4.9072 5.5743 13 6 3.4642 -6.2424 5.7969 14 6 2.5910 -6.8756 4.9234 15 7 2.0829 -6.1925 3.9131 16 7 3.5050 -0.7207 1.2495 17 6 4.1892 0.3542 1.7510 18 1 3.6488 1.2015 2.1466 19 6 5.5773 0.3549 1.7508 20 7 6.2358 -0.6800 1.2736 21 14 6.5107 1.8210 2.4355 22 1 6.7634 2.7991 1.3470 23 1 5.7051 2.4659 3.5033 24 1 7.8056 1.3635 3.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.4437 -2.1651 1.3387 33 1 1.8184 -2.6510 0.3178 34 1 2.7227 -2.4348 2.9848 35 1 4.4473 -4.3842 6.2347 36 1 3.8945 -6.7763 6.6311 37 1 2.3302 -7.9136 5.0677 38 1 3.9903 -1.4819 0.8944 39 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715674142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:00 Heat of formation + Delta-G solvation = -1.177399 kcal Electronic energy + Delta-G solvation = -21623.191725 eV Core-core repulsion = 18372.389168 eV Total energy + Delta-G solvation = -3250.802557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.27628 -40.52208 -38.85755 -35.69119 -35.23460 -34.71652 -33.31810 -31.98200 -29.68133 -27.53225 -26.56634 -25.59474 -25.23149 -23.56218 -22.04084 -20.93886 -19.67219 -19.19741 -18.71381 -17.10756 -17.04474 -16.93484 -16.48189 -16.23589 -15.87795 -15.48974 -15.35607 -15.02647 -14.88835 -14.52973 -14.36525 -13.67011 -13.54651 -12.89763 -12.81374 -12.68998 -12.49881 -12.34204 -12.09205 -11.96558 -11.87672 -11.57842 -11.50114 -11.27821 -11.15798 -10.80950 -10.78708 -10.41201 -10.18428 -9.04353 -8.25356 -5.20224 -0.64408 0.05716 1.49396 1.62326 1.70671 1.72536 1.84897 2.76026 2.76804 2.86475 3.25580 3.50552 3.62634 3.70432 3.79204 3.87486 4.07059 4.21183 4.22730 4.34388 4.34905 4.55397 4.63052 4.73897 4.86094 4.90788 4.97868 5.09893 5.18789 5.22528 5.26129 5.38662 5.57226 5.70979 5.75015 5.87749 6.26437 6.58969 6.80397 6.99388 7.15884 8.05806 8.19035 9.24977 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.005657 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.511001 B = 4948.112240 C = 6630.258326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.133 4.133 4 C 0.178 3.822 5 H 0.055 0.945 6 C 0.118 3.882 7 N -0.688 5.688 8 C 0.573 3.427 9 O -0.552 6.552 10 C 0.255 3.745 11 N -0.512 5.512 12 C 0.129 3.871 13 C -0.175 4.175 14 C 0.131 3.869 15 N -0.503 5.503 16 N -0.739 5.739 17 C -0.301 4.301 18 H 0.072 0.928 19 C -0.105 4.105 20 N -0.980 5.980 21 Si 1.122 2.878 22 H -0.292 1.292 23 H -0.272 1.272 24 H -0.300 1.300 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.417 0.583 35 H 0.207 0.793 36 H 0.207 0.793 37 H 0.215 0.785 38 H 0.357 0.643 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 -7.521 10.005 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.190 4.190 4 C 0.069 3.931 5 H 0.073 0.927 6 C -0.006 4.006 7 N -0.340 5.340 8 C 0.356 3.644 9 O -0.429 6.429 10 C -0.015 4.015 11 N -0.230 5.230 12 C -0.036 4.036 13 C -0.196 4.196 14 C -0.035 4.035 15 N -0.219 5.219 16 N -0.380 5.380 17 C -0.433 4.433 18 H 0.089 0.911 19 C -0.296 4.296 20 N -0.629 5.629 21 Si 0.949 3.051 22 H -0.219 1.219 23 H -0.197 1.197 24 H -0.227 1.227 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.254 0.746 35 H 0.223 0.777 36 H 0.224 0.776 37 H 0.232 0.768 38 H 0.189 0.811 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.892 -6.568 9.066 13.697 hybrid contribution -0.438 -1.149 0.178 1.243 sum -8.330 -7.717 9.244 14.642 Atomic orbital electron populations 1.21859 0.93694 1.01992 1.02338 1.21608 0.96115 0.96882 0.98046 1.21713 1.01627 0.95342 1.00331 1.20625 0.83557 0.91849 0.97036 0.92706 1.21827 0.98517 0.92238 0.88003 1.45832 1.47591 1.09977 1.30565 1.17682 0.81147 0.82092 0.83475 1.90721 1.36841 1.68429 1.46912 1.22453 0.94314 0.89358 0.95353 1.68330 1.08325 1.40866 1.05451 1.24081 0.94406 0.93391 0.91769 1.23720 0.97574 0.96191 1.02135 1.24184 0.90296 1.01856 0.87122 1.68185 1.24496 1.07292 1.21976 1.42585 1.01086 1.19922 1.74448 1.20230 0.91565 0.97256 1.34227 0.91050 1.26867 0.95061 1.05245 1.02401 1.70956 1.37573 1.07866 1.46471 0.82668 0.74581 0.72081 0.75788 1.21909 1.19737 1.22656 0.92195 0.91786 0.92245 0.93090 0.93322 0.92832 0.93509 0.89242 0.92589 0.74573 0.77684 0.77618 0.76812 0.81144 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.84 71.98 0.64 -3.04 16 2 C -0.10 -3.53 2.69 -10.79 -0.03 -3.56 16 3 C -0.13 -4.70 8.26 71.98 0.59 -4.10 16 4 C 0.18 6.70 2.18 44.99 0.10 6.80 16 5 H 0.05 2.10 8.08 -2.39 -0.02 2.08 16 6 C 0.12 4.19 4.73 86.38 0.41 4.60 16 7 N -0.69 -25.89 5.38 -465.30 -2.50 -28.39 16 8 C 0.57 22.49 7.85 86.99 0.68 23.18 16 9 O -0.55 -24.17 16.86 -3.61 -0.06 -24.23 16 10 C 0.25 8.81 7.60 137.69 1.05 9.85 16 11 N -0.51 -15.82 9.58 -189.09 -1.81 -17.63 16 12 C 0.13 2.58 11.30 84.79 0.96 3.54 16 13 C -0.17 -2.33 10.18 22.54 0.23 -2.11 16 14 C 0.13 2.39 11.30 84.78 0.96 3.35 16 15 N -0.50 -15.43 10.13 -189.09 -1.92 -17.35 16 16 N -0.74 -34.68 4.44 -322.95 -1.43 -36.11 16 17 C -0.30 -15.63 7.57 84.03 0.64 -14.99 16 18 H 0.07 3.61 7.40 -2.91 -0.02 3.59 16 19 C -0.10 -5.82 5.50 84.86 0.47 -5.36 16 20 N -0.98 -60.04 13.70 21.65 0.30 -59.74 16 21 Si 1.12 50.87 29.92 68.60 2.05 52.93 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.06 1.47 6.55 -2.39 -0.02 1.45 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 2.10 6.01 -2.39 -0.01 2.08 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 2.86 6.71 -2.38 -0.02 2.84 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.42 16.46 7.44 -92.71 -0.69 15.77 16 35 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.21 0.54 8.06 -2.91 -0.02 0.51 16 37 H 0.22 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.36 18.35 6.63 -92.71 -0.61 17.74 16 39 H 0.24 14.93 6.77 -92.71 -0.63 14.31 16 Total: -1.00 -74.61 327.94 1.23 -73.38 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -0.09 Total: 38.98 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 6.69 Total: 18.17 kcal Atomic # 7 Polarization: -151.87 SS G_CDS: -7.36 Total: -159.23 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.06 Total: -24.23 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.93 kcal Total: -74.61 1.23 -73.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715674142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.205 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds