Wall clock time and date at job start Tue Mar 31 2020 00:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46756 * 2 1 4 4 C 1.52995 * 109.47498 * 119.99463 * 2 1 3 5 5 H 1.09000 * 109.47407 * 300.01025 * 4 2 1 6 6 C 1.53004 * 109.46708 * 60.00094 * 4 2 1 7 7 N 1.46504 * 109.46929 * 175.00245 * 6 4 2 8 8 C 1.34777 * 119.99858 * 180.02562 * 7 6 4 9 9 O 1.21523 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.48154 * 120.00205 * 180.27154 * 8 7 6 11 11 C 1.39711 * 120.18473 * 179.72047 * 10 8 7 12 12 C 1.38824 * 117.90079 * 180.02562 * 11 10 8 13 13 C 1.38571 * 118.06620 * 0.02562 * 12 11 10 14 14 N 1.32174 * 120.06988 * 0.02562 * 13 12 11 15 15 N 1.28354 * 122.29783 * 359.70377 * 14 13 12 16 16 N 1.46490 * 109.47407 * 180.02562 * 4 2 1 17 17 C 1.36935 * 120.00122 * 85.00627 * 16 4 2 18 18 H 1.08006 * 119.99947 * 359.97438 * 17 16 4 19 19 C 1.38818 * 120.00427 * 180.02562 * 17 16 4 20 20 N 1.31612 * 120.00013 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99441 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47260 * 90.00673 * 21 19 17 23 23 H 1.48505 * 109.46803 * 210.00095 * 21 19 17 24 24 H 1.48493 * 109.47423 * 329.99968 * 21 19 17 25 25 H 1.08997 * 109.46969 * 300.00283 * 1 2 3 26 26 H 1.08998 * 109.47014 * 60.00187 * 1 2 3 27 27 H 1.09001 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47354 * 240.00330 * 2 1 3 29 29 H 1.08998 * 109.47102 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47207 * 299.99695 * 3 2 1 31 31 H 1.08997 * 109.47613 * 60.00111 * 3 2 1 32 32 H 1.08998 * 109.47202 * 55.00089 * 6 4 2 33 33 H 1.08997 * 109.47419 * 294.99987 * 6 4 2 34 34 H 0.96991 * 120.00424 * 359.97438 * 7 6 4 35 35 H 1.08005 * 121.05109 * 359.97438 * 11 10 8 36 36 H 1.07995 * 120.97090 * 180.02562 * 12 11 10 37 37 H 1.08004 * 119.96768 * 180.02562 * 13 12 11 38 38 H 0.97003 * 120.00256 * 265.00303 * 16 4 2 39 39 H 0.97009 * 119.99872 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 1.5301 -2.1636 1.2493 7 7 2.1143 -2.8880 2.3808 8 6 1.8062 -4.1846 2.5823 9 8 1.0435 -4.7525 1.8257 10 6 2.3922 -4.9155 3.7300 11 6 2.0709 -6.2580 3.9458 12 6 2.6466 -6.8966 5.0358 13 6 3.5032 -6.1648 5.8425 14 7 3.7517 -4.8964 5.5657 15 7 3.2281 -4.2992 4.5575 16 7 3.5050 -0.7205 1.2495 17 6 4.1892 0.3544 1.7510 18 1 3.6488 1.2020 2.1460 19 6 5.5774 0.3552 1.7508 20 7 6.2349 1.3886 2.2324 21 14 6.5120 -1.1105 1.0671 22 1 6.7593 -0.9073 -0.3830 23 1 7.8098 -1.2447 1.7764 24 1 5.7102 -2.3447 1.2643 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.8185 -2.6510 0.3180 33 1 0.4438 -2.1650 1.3389 34 1 2.7233 -2.4349 2.9845 35 1 1.3953 -6.7821 3.2861 36 1 2.4331 -7.9336 5.2488 37 1 3.9684 -6.6312 6.6984 38 1 3.9904 -1.4817 0.8945 39 1 7.2050 1.3890 2.2326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715674538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:25 Heat of formation + Delta-G solvation = 30.186939 kcal Electronic energy + Delta-G solvation = -21646.504422 eV Core-core repulsion = 18397.061924 eV Total energy + Delta-G solvation = -3249.442498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27919 -39.33790 -37.39501 -34.22043 -33.32129 -33.10710 -32.80004 -30.79106 -28.41095 -26.29450 -25.52049 -24.75491 -23.41114 -21.83344 -20.75707 -19.59624 -18.46621 -17.61915 -17.29931 -16.77630 -15.74570 -15.67392 -15.17265 -14.83394 -14.38009 -14.06356 -13.92926 -13.57507 -13.42109 -13.05563 -12.85812 -12.45641 -12.17083 -11.67059 -11.63983 -11.27683 -11.06701 -10.85979 -10.65360 -10.54954 -10.27365 -10.27215 -10.14270 -10.06848 -9.94702 -9.92602 -9.45609 -8.92497 -8.83772 -7.30430 -5.77269 -3.13302 0.29001 0.53431 2.62655 3.08816 3.38877 3.42451 3.47579 3.54732 3.78339 4.21881 4.40521 4.45516 4.59540 4.73756 4.92089 5.14393 5.23479 5.41056 5.45779 5.58055 5.61500 5.69622 5.74662 5.83089 5.88987 6.03733 6.17741 6.28419 6.38309 6.46324 6.57255 6.59324 6.77879 7.00801 7.35687 7.64136 7.97635 8.20603 8.40594 8.41078 9.18228 9.90818 10.09133 11.40338 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.006038 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.895913 B = 4635.962308 C = 6108.071659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.174 3.826 5 H 0.064 0.936 6 C 0.107 3.893 7 N -0.690 5.690 8 C 0.569 3.431 9 O -0.542 6.542 10 C 0.027 3.973 11 C -0.068 4.068 12 C -0.125 4.125 13 C 0.051 3.949 14 N -0.237 5.237 15 N -0.201 5.201 16 N -0.746 5.746 17 C -0.241 4.241 18 H 0.095 0.905 19 C 0.010 3.990 20 N -0.929 5.929 21 Si 0.879 3.121 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.278 1.278 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.422 0.578 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.362 0.638 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.327 -14.777 3.077 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.064 3.936 5 H 0.082 0.918 6 C -0.017 4.017 7 N -0.340 5.340 8 C 0.351 3.649 9 O -0.419 6.419 10 C -0.120 4.120 11 C -0.097 4.097 12 C -0.154 4.154 13 C -0.112 4.112 14 N -0.080 5.080 15 N -0.048 5.048 16 N -0.389 5.389 17 C -0.371 4.371 18 H 0.113 0.887 19 C -0.186 4.186 20 N -0.577 5.577 21 Si 0.710 3.290 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.204 1.204 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.261 0.739 35 H 0.179 0.821 36 H 0.174 0.826 37 H 0.194 0.806 38 H 0.195 0.805 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.986 -13.502 3.040 17.066 hybrid contribution 0.425 -2.219 -0.562 2.328 sum -9.561 -15.721 2.478 18.566 Atomic orbital electron populations 1.21944 0.96634 1.00925 1.01232 1.21697 0.93758 0.98118 0.99391 1.21827 1.04499 0.94141 0.99227 1.20538 0.85199 0.90934 0.96911 0.91777 1.21945 0.97964 0.93397 0.88408 1.45959 1.47346 1.10136 1.30609 1.17574 0.81432 0.82435 0.83426 1.90769 1.36468 1.68180 1.46485 1.22981 0.97452 0.93998 0.97519 1.22436 0.96985 0.93795 0.96531 1.22441 0.96264 1.02248 0.94472 1.24562 0.94670 0.92485 0.99496 1.73244 1.16523 1.08679 1.09537 1.73378 1.03301 1.29813 0.98284 1.42823 1.00262 1.20716 1.75065 1.19023 0.89262 0.95966 1.32808 0.88694 1.24626 0.96196 0.96942 1.00839 1.69685 1.07056 1.29719 1.51212 0.86642 0.80027 0.83615 0.78764 1.21307 1.21839 1.20392 0.92957 0.93379 0.93111 0.91966 0.89213 0.94970 0.93733 0.91452 0.90665 0.73921 0.82056 0.82560 0.80564 0.80536 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.84 37.16 0.33 -1.67 16 2 C -0.11 -1.76 2.69 -90.62 -0.24 -2.00 16 3 C -0.14 -2.52 8.26 37.16 0.31 -2.21 16 4 C 0.17 3.10 2.18 -67.94 -0.15 2.95 16 5 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 6 C 0.11 1.71 4.73 -4.04 -0.02 1.69 16 7 N -0.69 -11.63 5.38 -61.15 -0.33 -11.96 16 8 C 0.57 9.33 7.82 -12.19 -0.10 9.24 16 9 O -0.54 -9.56 16.39 5.35 0.09 -9.47 16 10 C 0.03 0.39 6.83 -82.83 -0.57 -0.17 16 11 C -0.07 -0.74 9.73 -38.81 -0.38 -1.11 16 12 C -0.13 -1.00 10.20 -39.24 -0.40 -1.40 16 13 C 0.05 0.48 11.31 -17.28 -0.20 0.29 16 14 N -0.24 -3.42 11.51 30.59 0.35 -3.07 16 15 N -0.20 -3.26 10.75 33.32 0.36 -2.90 16 16 N -0.75 -16.30 4.24 -53.43 -0.23 -16.52 16 17 C -0.24 -6.29 8.05 -15.06 -0.12 -6.41 16 18 H 0.10 2.66 7.62 -52.48 -0.40 2.26 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -28.37 13.97 55.49 0.78 -27.60 16 21 Si 0.88 22.00 27.74 -169.99 -4.71 17.28 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.62 6.54 -51.93 -0.34 0.28 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.95 6.01 -51.93 -0.31 1.64 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.10 6.71 -51.93 -0.35 0.75 16 34 H 0.42 7.65 7.49 -40.82 -0.31 7.34 16 35 H 0.16 1.48 7.72 -52.48 -0.41 1.08 16 36 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.36 8.09 5.66 -40.82 -0.23 7.86 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -32.23 325.96 -5.72 -37.95 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.31 Total: 11.98 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.63 Total: -0.62 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.93 Total: -62.04 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.23 -5.72 -37.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715674538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.141 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds