Wall clock time and date at job start Tue Mar 31 2020 00:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46756 * 2 1 4 4 C 1.52995 * 109.47498 * 119.99463 * 2 1 3 5 5 H 1.09000 * 109.47407 * 300.01025 * 4 2 1 6 6 C 1.53004 * 109.46708 * 60.00094 * 4 2 1 7 7 N 1.46504 * 109.46929 * 175.00245 * 6 4 2 8 8 C 1.34777 * 119.99858 * 180.02562 * 7 6 4 9 9 O 1.21523 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.48154 * 120.00205 * 180.27154 * 8 7 6 11 11 C 1.39711 * 120.18473 * 179.72047 * 10 8 7 12 12 C 1.38824 * 117.90079 * 180.02562 * 11 10 8 13 13 C 1.38571 * 118.06620 * 0.02562 * 12 11 10 14 14 N 1.32174 * 120.06988 * 0.02562 * 13 12 11 15 15 N 1.28354 * 122.29783 * 359.70377 * 14 13 12 16 16 N 1.46490 * 109.47407 * 180.02562 * 4 2 1 17 17 C 1.36935 * 120.00122 * 85.00627 * 16 4 2 18 18 H 1.08006 * 119.99947 * 359.97438 * 17 16 4 19 19 C 1.38818 * 120.00427 * 180.02562 * 17 16 4 20 20 N 1.31612 * 120.00013 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99441 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47260 * 90.00673 * 21 19 17 23 23 H 1.48505 * 109.46803 * 210.00095 * 21 19 17 24 24 H 1.48493 * 109.47423 * 329.99968 * 21 19 17 25 25 H 1.08997 * 109.46969 * 300.00283 * 1 2 3 26 26 H 1.08998 * 109.47014 * 60.00187 * 1 2 3 27 27 H 1.09001 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47354 * 240.00330 * 2 1 3 29 29 H 1.08998 * 109.47102 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47207 * 299.99695 * 3 2 1 31 31 H 1.08997 * 109.47613 * 60.00111 * 3 2 1 32 32 H 1.08998 * 109.47202 * 55.00089 * 6 4 2 33 33 H 1.08997 * 109.47419 * 294.99987 * 6 4 2 34 34 H 0.96991 * 120.00424 * 359.97438 * 7 6 4 35 35 H 1.08005 * 121.05109 * 359.97438 * 11 10 8 36 36 H 1.07995 * 120.97090 * 180.02562 * 12 11 10 37 37 H 1.08004 * 119.96768 * 180.02562 * 13 12 11 38 38 H 0.97003 * 120.00256 * 265.00303 * 16 4 2 39 39 H 0.97009 * 119.99872 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 1.5301 -2.1636 1.2493 7 7 2.1143 -2.8880 2.3808 8 6 1.8062 -4.1846 2.5823 9 8 1.0435 -4.7525 1.8257 10 6 2.3922 -4.9155 3.7300 11 6 2.0709 -6.2580 3.9458 12 6 2.6466 -6.8966 5.0358 13 6 3.5032 -6.1648 5.8425 14 7 3.7517 -4.8964 5.5657 15 7 3.2281 -4.2992 4.5575 16 7 3.5050 -0.7205 1.2495 17 6 4.1892 0.3544 1.7510 18 1 3.6488 1.2020 2.1460 19 6 5.5774 0.3552 1.7508 20 7 6.2349 1.3886 2.2324 21 14 6.5120 -1.1105 1.0671 22 1 6.7593 -0.9073 -0.3830 23 1 7.8098 -1.2447 1.7764 24 1 5.7102 -2.3447 1.2643 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.8185 -2.6510 0.3180 33 1 0.4438 -2.1650 1.3389 34 1 2.7233 -2.4349 2.9845 35 1 1.3953 -6.7821 3.2861 36 1 2.4331 -7.9336 5.2488 37 1 3.9684 -6.6312 6.6984 38 1 3.9904 -1.4817 0.8945 39 1 7.2050 1.3890 2.2326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715674538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:24 Heat of formation + Delta-G solvation = 5.802270 kcal Electronic energy + Delta-G solvation = -21647.561821 eV Core-core repulsion = 18397.061924 eV Total energy + Delta-G solvation = -3250.499896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.21956 -40.57720 -38.87690 -35.51852 -34.95260 -34.18494 -33.76301 -32.68493 -29.87236 -27.59920 -26.66366 -25.65605 -25.03800 -23.35719 -21.99754 -21.04235 -19.92096 -19.04740 -18.40381 -17.61526 -17.15190 -16.93115 -16.59793 -16.04231 -15.79936 -15.53960 -15.00284 -14.94471 -14.71194 -14.42110 -14.26694 -14.10751 -13.49550 -12.98685 -12.94416 -12.85460 -12.62465 -12.53054 -12.26105 -11.99432 -11.78564 -11.49660 -11.33731 -11.33512 -11.25961 -11.23443 -10.87200 -10.82998 -10.16175 -9.27760 -7.96117 -5.27423 -0.60255 -0.26018 1.36731 1.38525 1.44192 1.53760 1.94102 2.50291 2.58084 2.80016 3.35676 3.42944 3.54348 3.62360 3.77271 3.82559 3.92869 4.14357 4.24253 4.27638 4.41253 4.60196 4.66691 4.74457 4.85586 4.91187 4.95950 5.03260 5.15559 5.16508 5.23890 5.28044 5.43609 5.62884 5.77765 5.86577 6.26503 6.33179 6.91227 7.12406 7.49918 7.86973 8.04674 9.25096 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.006038 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.895913 B = 4635.962308 C = 6108.071659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.135 4.135 4 C 0.173 3.827 5 H 0.056 0.944 6 C 0.115 3.885 7 N -0.698 5.698 8 C 0.570 3.430 9 O -0.558 6.558 10 C 0.003 3.997 11 C -0.074 4.074 12 C -0.096 4.096 13 C 0.057 3.943 14 N -0.281 5.281 15 N -0.244 5.244 16 N -0.747 5.747 17 C -0.202 4.202 18 H 0.070 0.930 19 C -0.058 4.058 20 N -0.981 5.981 21 Si 0.939 3.061 22 H -0.284 1.284 23 H -0.304 1.304 24 H -0.262 1.262 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.415 0.585 35 H 0.178 0.822 36 H 0.211 0.789 37 H 0.220 0.780 38 H 0.362 0.638 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 -18.068 2.998 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.192 4.192 4 C 0.065 3.935 5 H 0.074 0.926 6 C -0.009 4.009 7 N -0.348 5.348 8 C 0.353 3.647 9 O -0.436 6.436 10 C -0.144 4.144 11 C -0.103 4.103 12 C -0.125 4.125 13 C -0.106 4.106 14 N -0.123 5.123 15 N -0.090 5.090 16 N -0.389 5.389 17 C -0.333 4.333 18 H 0.087 0.913 19 C -0.249 4.249 20 N -0.632 5.632 21 Si 0.769 3.231 22 H -0.211 1.211 23 H -0.231 1.231 24 H -0.188 1.188 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.252 0.748 35 H 0.195 0.805 36 H 0.228 0.772 37 H 0.236 0.764 38 H 0.194 0.806 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.814 -16.820 2.941 20.763 hybrid contribution 0.852 -1.261 -0.453 1.587 sum -10.962 -18.080 2.489 21.290 Atomic orbital electron populations 1.21862 0.93595 1.02268 1.02194 1.21586 0.96218 0.96390 0.98216 1.21727 1.01613 0.95853 1.00032 1.20712 0.82685 0.92678 0.97443 0.92628 1.21883 0.98926 0.91656 0.88419 1.46031 1.47475 1.10672 1.30636 1.17859 0.80967 0.82076 0.83753 1.90741 1.37226 1.68381 1.47283 1.22872 0.98572 0.95608 0.97344 1.22729 0.97372 0.92333 0.97817 1.23020 0.93460 1.04059 0.91918 1.25308 0.93992 0.90940 1.00381 1.73118 1.17993 1.11469 1.09764 1.73259 1.04754 1.31502 0.99521 1.42811 1.02081 1.19357 1.74684 1.18935 0.89030 0.95682 1.29608 0.91259 1.25240 0.97371 0.99444 1.02840 1.69839 1.06831 1.32099 1.54441 0.85645 0.78289 0.81343 0.77816 1.21068 1.23135 1.18772 0.92661 0.91826 0.91580 0.91744 0.93441 0.92776 0.94350 0.91310 0.88662 0.74833 0.80505 0.77227 0.76378 0.80555 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.84 71.98 0.64 -2.74 16 2 C -0.10 -3.21 2.69 -10.79 -0.03 -3.24 16 3 C -0.13 -4.83 8.26 71.98 0.59 -4.24 16 4 C 0.17 6.07 2.18 44.99 0.10 6.17 16 5 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 6 C 0.11 3.53 4.73 86.38 0.41 3.94 16 7 N -0.70 -23.34 5.38 -465.66 -2.51 -25.85 16 8 C 0.57 18.33 7.82 86.88 0.68 19.01 16 9 O -0.56 -18.96 16.39 -3.79 -0.06 -19.02 16 10 C 0.00 0.09 6.83 41.99 0.29 0.38 16 11 C -0.07 -1.40 9.73 22.77 0.22 -1.17 16 12 C -0.10 -1.10 10.20 22.49 0.23 -0.87 16 13 C 0.06 0.89 11.31 84.72 0.96 1.85 16 14 N -0.28 -7.86 11.51 -57.15 -0.66 -8.52 16 15 N -0.24 -7.93 10.75 -48.49 -0.52 -8.45 16 16 N -0.75 -32.81 4.24 -322.95 -1.37 -34.18 16 17 C -0.20 -10.83 8.05 84.04 0.68 -10.16 16 18 H 0.07 4.05 7.62 -2.91 -0.02 4.03 16 19 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 20 N -0.98 -62.38 13.97 21.65 0.30 -62.08 16 21 Si 0.94 46.66 27.74 68.60 1.90 48.56 16 22 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 24 H -0.26 -12.18 6.52 99.48 0.65 -11.53 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.40 6.54 -2.39 -0.02 1.38 16 28 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 29 H 0.05 2.10 6.01 -2.39 -0.01 2.08 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.10 2.57 6.71 -2.39 -0.02 2.55 16 34 H 0.41 15.29 7.49 -92.72 -0.69 14.60 16 35 H 0.18 2.71 7.72 -2.91 -0.02 2.69 16 36 H 0.21 0.15 8.06 -2.91 -0.02 0.13 16 37 H 0.22 1.36 8.06 -2.91 -0.02 1.33 16 38 H 0.36 16.04 5.66 -92.71 -0.52 15.51 16 39 H 0.25 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -74.26 325.96 2.11 -72.15 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.20 Total: 31.34 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.23 Total: 6.05 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -4.75 Total: -139.08 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.06 Total: -19.02 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.90 Total: 48.56 kcal Total: -74.26 2.11 -72.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715674538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.948 kcal (2) G-P(sol) polarization free energy of solvation -74.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds