Wall clock time and date at job start Tue Mar 31 2020 00:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21520 * 119.99912 * 0.02562 * 8 7 6 10 10 C 1.48150 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.39724 * 120.18458 * 180.02562 * 10 8 7 12 12 C 1.38820 * 117.90043 * 180.02562 * 11 10 8 13 13 C 1.38571 * 118.06651 * 0.02562 * 12 11 10 14 14 N 1.32175 * 120.07086 * 359.97438 * 13 12 11 15 15 N 1.28352 * 122.30079 * 359.75436 * 14 13 12 16 16 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 26 26 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 27 27 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 29 29 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 31 31 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 33 33 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 34 34 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 35 35 H 1.08005 * 121.04732 * 359.97438 * 11 10 8 36 36 H 1.07997 * 120.96709 * 180.02562 * 12 11 10 37 37 H 1.08009 * 119.96447 * 180.02562 * 13 12 11 38 38 H 0.97004 * 119.99747 * 95.00774 * 16 4 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0418 0.7943 5.0287 10 6 2.3963 -0.7686 6.1218 11 6 2.0783 -0.2815 7.3921 12 6 2.6596 -0.9014 8.4898 13 6 3.5190 -1.9637 8.2593 14 7 3.7648 -2.3604 7.0226 15 7 3.2281 -1.7967 6.0021 16 7 3.5049 -0.7217 1.2489 17 6 4.1891 -1.6935 0.5688 18 1 3.6488 -2.4594 0.0322 19 6 5.5772 -1.6943 0.5689 20 7 6.2358 -0.7578 1.2183 21 14 6.5106 -3.0195 -0.3595 22 1 7.9708 -2.7942 -0.2092 23 1 6.1561 -4.3525 0.1909 24 1 6.1470 -2.9654 -1.7983 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.8183 1.0503 2.4549 33 1 0.4436 -0.0769 2.5444 34 1 2.7231 -1.3670 3.6010 35 1 1.4022 0.5516 7.5161 36 1 2.4482 -0.5656 9.4942 37 1 3.9878 -2.4687 9.0910 38 1 3.9902 -0.0337 1.7306 39 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715674540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:29 Heat of formation + Delta-G solvation = 27.787078 kcal Electronic energy + Delta-G solvation = -21651.788319 eV Core-core repulsion = 18402.241756 eV Total energy + Delta-G solvation = -3249.546563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22240 -39.30321 -37.43488 -34.09804 -33.52508 -33.25596 -32.71192 -30.18858 -27.61178 -26.68361 -25.31335 -24.68048 -23.47153 -22.62707 -20.85307 -19.08765 -18.00456 -17.46537 -17.33524 -16.78292 -15.98949 -15.59895 -15.04684 -14.70303 -14.31348 -13.94901 -13.85611 -13.58763 -13.52135 -13.45345 -12.97187 -12.72557 -11.93346 -11.61292 -11.50207 -11.33973 -10.94450 -10.76868 -10.54874 -10.49641 -10.25530 -10.21653 -10.07521 -9.94439 -9.88292 -9.85856 -9.15269 -8.89816 -8.76095 -7.05046 -6.07877 -3.09589 0.34678 0.58890 2.68515 3.15317 3.54316 3.57728 3.60698 3.74818 3.84109 4.27236 4.45769 4.50571 4.68354 4.79103 4.97563 5.25920 5.31055 5.45783 5.50034 5.61191 5.66867 5.70459 5.74932 5.87007 5.90031 6.02653 6.06474 6.26044 6.29423 6.36087 6.51511 6.65768 6.74774 6.94071 6.97947 7.70850 7.82000 8.26955 8.46848 8.76684 9.20673 10.07620 10.21390 11.39565 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.005852 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.358289 B = 4783.344550 C = 6525.464994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.056 0.944 6 C 0.106 3.894 7 N -0.687 5.687 8 C 0.569 3.431 9 O -0.543 6.543 10 C 0.028 3.972 11 C -0.068 4.068 12 C -0.126 4.126 13 C 0.050 3.950 14 N -0.237 5.237 15 N -0.199 5.199 16 N -0.730 5.730 17 C -0.333 4.333 18 H 0.065 0.935 19 C -0.040 4.040 20 N -0.940 5.940 21 Si 1.078 2.922 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.296 1.296 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.422 0.578 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.177 0.823 38 H 0.368 0.632 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 0.825 11.478 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.074 0.926 6 C -0.018 4.018 7 N -0.338 5.338 8 C 0.351 3.649 9 O -0.421 6.421 10 C -0.119 4.119 11 C -0.098 4.098 12 C -0.155 4.155 13 C -0.113 4.113 14 N -0.080 5.080 15 N -0.046 5.046 16 N -0.372 5.372 17 C -0.463 4.463 18 H 0.083 0.917 19 C -0.238 4.238 20 N -0.585 5.585 21 Si 0.909 3.091 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.224 1.224 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.260 0.740 35 H 0.179 0.821 36 H 0.174 0.826 37 H 0.194 0.806 38 H 0.202 0.798 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.781 -0.312 9.979 13.296 hybrid contribution -1.831 1.429 1.471 2.749 sum -10.611 1.117 11.450 15.651 Atomic orbital electron populations 1.21923 0.96626 1.01065 1.01039 1.21709 0.93651 0.97033 1.00833 1.21763 1.02344 0.95728 0.99898 1.20446 0.85969 0.96846 0.90268 0.92629 1.21982 0.97612 0.98033 0.84181 1.45951 1.47190 1.35955 1.04695 1.17574 0.81455 0.83113 0.82759 1.90763 1.36602 1.28268 1.86446 1.22979 0.97434 0.96067 0.95378 1.22434 0.96997 0.98954 0.91403 1.22432 0.96316 0.95907 1.00807 1.24555 0.94741 0.94446 0.97523 1.73241 1.16303 1.21826 0.96605 1.73386 1.03042 1.04452 1.23748 1.42429 0.99302 1.33384 1.62103 1.19976 0.91712 1.06348 1.28309 0.91715 1.25702 0.93377 1.03085 1.01628 1.70888 1.37330 1.15414 1.34854 0.83272 0.76309 0.74503 0.75030 1.21161 1.22216 1.22401 0.92961 0.93415 0.93131 0.90763 0.91699 0.94051 0.93590 0.91032 0.91078 0.73973 0.82096 0.82590 0.80595 0.79833 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.84 37.15 0.33 -1.74 16 2 C -0.11 -1.89 2.91 -90.62 -0.26 -2.16 16 3 C -0.14 -2.37 8.69 37.16 0.32 -2.05 16 4 C 0.18 3.32 2.27 -67.93 -0.15 3.16 16 5 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 6 C 0.11 1.82 4.51 -4.04 -0.02 1.80 16 7 N -0.69 -12.25 5.38 -61.15 -0.33 -12.58 16 8 C 0.57 9.81 7.82 -12.19 -0.10 9.71 16 9 O -0.54 -10.04 16.39 5.35 0.09 -9.95 16 10 C 0.03 0.43 6.83 -82.83 -0.57 -0.14 16 11 C -0.07 -0.78 9.73 -38.81 -0.38 -1.16 16 12 C -0.13 -1.07 10.20 -39.24 -0.40 -1.47 16 13 C 0.05 0.50 11.31 -17.28 -0.20 0.31 16 14 N -0.24 -3.57 11.51 30.59 0.35 -3.21 16 15 N -0.20 -3.37 10.75 33.32 0.36 -3.02 16 16 N -0.73 -17.08 3.79 -53.43 -0.20 -17.28 16 17 C -0.33 -8.92 9.93 -15.06 -0.15 -9.07 16 18 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 19 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 20 N -0.94 -28.62 13.70 55.49 0.76 -27.86 16 21 Si 1.08 25.80 29.92 -169.99 -5.09 20.71 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.05 0.69 6.54 -51.93 -0.34 0.35 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.06 1.28 7.60 -51.93 -0.39 0.89 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.73 6.32 -51.93 -0.33 0.40 16 32 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 33 H 0.07 1.12 6.71 -51.93 -0.35 0.78 16 34 H 0.42 8.14 7.49 -40.82 -0.31 7.84 16 35 H 0.16 1.58 7.72 -52.48 -0.41 1.18 16 36 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.18 1.05 8.06 -52.48 -0.42 0.62 16 38 H 0.37 9.16 6.63 -40.82 -0.27 8.89 16 39 H 0.25 7.68 6.77 -40.82 -0.28 7.40 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -32.60 327.86 -5.94 -38.54 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -5.15 Total: 13.74 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.66 Total: -4.02 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: 0.94 Total: -63.96 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.09 Total: 20.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.60 -5.94 -38.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715674540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.323 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds