Wall clock time and date at job start Tue Mar 31 2020 00:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21520 * 119.99912 * 0.02562 * 8 7 6 10 10 C 1.48150 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.39724 * 120.18458 * 180.02562 * 10 8 7 12 12 C 1.38820 * 117.90043 * 180.02562 * 11 10 8 13 13 C 1.38571 * 118.06651 * 0.02562 * 12 11 10 14 14 N 1.32175 * 120.07086 * 359.97438 * 13 12 11 15 15 N 1.28352 * 122.30079 * 359.75436 * 14 13 12 16 16 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 26 26 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 27 27 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 29 29 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 31 31 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 33 33 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 34 34 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 35 35 H 1.08005 * 121.04732 * 359.97438 * 11 10 8 36 36 H 1.07997 * 120.96709 * 180.02562 * 12 11 10 37 37 H 1.08009 * 119.96447 * 180.02562 * 13 12 11 38 38 H 0.97004 * 119.99747 * 95.00774 * 16 4 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0418 0.7943 5.0287 10 6 2.3963 -0.7686 6.1218 11 6 2.0783 -0.2815 7.3921 12 6 2.6596 -0.9014 8.4898 13 6 3.5190 -1.9637 8.2593 14 7 3.7648 -2.3604 7.0226 15 7 3.2281 -1.7967 6.0021 16 7 3.5049 -0.7217 1.2489 17 6 4.1891 -1.6935 0.5688 18 1 3.6488 -2.4594 0.0322 19 6 5.5772 -1.6943 0.5689 20 7 6.2358 -0.7578 1.2183 21 14 6.5106 -3.0195 -0.3595 22 1 7.9708 -2.7942 -0.2092 23 1 6.1561 -4.3525 0.1909 24 1 6.1470 -2.9654 -1.7983 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.8183 1.0503 2.4549 33 1 0.4436 -0.0769 2.5444 34 1 2.7231 -1.3670 3.6010 35 1 1.4022 0.5516 7.5161 36 1 2.4482 -0.5656 9.4942 37 1 3.9878 -2.4687 9.0910 38 1 3.9902 -0.0337 1.7306 39 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715674540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:27 Heat of formation + Delta-G solvation = 3.862340 kcal Electronic energy + Delta-G solvation = -21652.825774 eV Core-core repulsion = 18402.241756 eV Total energy + Delta-G solvation = -3250.584018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.23686 -40.63307 -38.95824 -35.56467 -35.31211 -34.19671 -33.74033 -32.02316 -29.12347 -27.98729 -26.53358 -25.67434 -25.27087 -24.16569 -22.10815 -20.50697 -19.37911 -19.24888 -18.49436 -17.69202 -17.32126 -16.88658 -16.54838 -16.10449 -15.71988 -15.52628 -15.22441 -15.11753 -14.97181 -14.47867 -14.09448 -14.06561 -13.50561 -12.95076 -12.77045 -12.71749 -12.62652 -12.47375 -12.13581 -11.91483 -11.71200 -11.47796 -11.35072 -11.30647 -11.25041 -11.11093 -10.84933 -10.83987 -10.17622 -9.07401 -8.31847 -5.26212 -0.61835 -0.27200 1.50927 1.59621 1.69283 1.84623 1.91938 2.56524 2.73430 2.78406 3.40982 3.46382 3.59042 3.69352 3.74742 3.80809 3.91344 4.12927 4.13584 4.22686 4.35539 4.41651 4.57564 4.72164 4.81301 4.83479 4.84380 5.02043 5.06057 5.13485 5.14520 5.20471 5.33590 5.51127 5.56032 5.68489 6.29678 6.54556 6.87539 7.12553 7.48839 8.02622 8.14431 9.19040 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.005852 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.358289 B = 4783.344550 C = 6525.464994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.174 3.826 5 H 0.050 0.950 6 C 0.115 3.885 7 N -0.695 5.695 8 C 0.568 3.432 9 O -0.560 6.560 10 C 0.003 3.997 11 C -0.075 4.075 12 C -0.095 4.095 13 C 0.057 3.943 14 N -0.281 5.281 15 N -0.244 5.244 16 N -0.736 5.736 17 C -0.320 4.320 18 H 0.067 0.933 19 C -0.101 4.101 20 N -0.975 5.975 21 Si 1.123 2.877 22 H -0.298 1.298 23 H -0.280 1.280 24 H -0.279 1.279 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.413 0.587 35 H 0.177 0.823 36 H 0.212 0.788 37 H 0.221 0.779 38 H 0.358 0.642 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 0.673 13.140 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.066 3.934 5 H 0.068 0.932 6 C -0.008 4.008 7 N -0.345 5.345 8 C 0.352 3.648 9 O -0.439 6.439 10 C -0.144 4.144 11 C -0.103 4.103 12 C -0.124 4.124 13 C -0.106 4.106 14 N -0.123 5.123 15 N -0.090 5.090 16 N -0.378 5.378 17 C -0.451 4.451 18 H 0.085 0.915 19 C -0.293 4.293 20 N -0.623 5.623 21 Si 0.949 3.051 22 H -0.224 1.224 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.250 0.750 35 H 0.194 0.806 36 H 0.229 0.771 37 H 0.238 0.762 38 H 0.190 0.810 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.476 -0.471 11.626 15.657 hybrid contribution -1.404 1.479 1.097 2.316 sum -11.880 1.008 12.723 17.436 Atomic orbital electron populations 1.21841 0.93383 1.02090 1.02463 1.21576 0.96277 0.96442 0.98373 1.21693 0.99909 0.96003 1.01480 1.20622 0.83454 0.97164 0.92198 0.93190 1.21888 0.98501 0.97207 0.83243 1.46005 1.47287 1.35844 1.05338 1.17905 0.80990 0.82753 0.83130 1.90730 1.37398 1.28927 1.86800 1.22842 0.98623 0.96952 0.95968 1.22730 0.97440 0.99513 0.90661 1.23029 0.93435 0.93682 1.02226 1.25332 0.94025 0.94447 0.96801 1.73112 1.17693 1.23229 0.98279 1.73266 1.04472 1.05746 1.25508 1.42508 1.01152 1.32452 1.61689 1.20267 0.91937 1.06197 1.26705 0.91531 1.26965 0.94999 1.04563 1.02736 1.70994 1.37518 1.16670 1.37168 0.82678 0.74461 0.73011 0.74977 1.22416 1.20639 1.20568 0.91868 0.91650 0.92362 0.93043 0.95344 0.92006 0.92437 0.91655 0.89078 0.75006 0.80552 0.77083 0.76212 0.80970 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.84 71.98 0.64 -2.94 16 2 C -0.10 -3.55 2.91 -10.79 -0.03 -3.59 16 3 C -0.13 -4.48 8.69 71.99 0.63 -3.86 16 4 C 0.17 6.68 2.27 44.99 0.10 6.78 16 5 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 6 C 0.12 3.97 4.51 86.38 0.39 4.36 16 7 N -0.70 -25.59 5.38 -465.67 -2.51 -28.09 16 8 C 0.57 19.97 7.82 86.88 0.68 20.64 16 9 O -0.56 -20.62 16.39 -3.78 -0.06 -20.69 16 10 C 0.00 0.10 6.83 41.99 0.29 0.39 16 11 C -0.07 -1.56 9.73 22.77 0.22 -1.34 16 12 C -0.10 -1.24 10.20 22.49 0.23 -1.01 16 13 C 0.06 0.98 11.31 84.72 0.96 1.94 16 14 N -0.28 -8.36 11.51 -57.14 -0.66 -9.02 16 15 N -0.24 -8.48 10.75 -48.48 -0.52 -9.00 16 16 N -0.74 -35.68 3.79 -322.94 -1.23 -36.91 16 17 C -0.32 -17.53 9.93 84.03 0.83 -16.69 16 18 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 19 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 20 N -0.98 -61.58 13.70 21.65 0.30 -61.28 16 21 Si 1.12 52.85 29.92 68.60 2.05 54.90 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H 0.06 1.49 6.54 -2.39 -0.02 1.48 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.03 1.14 7.60 -2.39 -0.02 1.12 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.78 6.32 -2.39 -0.02 1.76 16 32 H 0.07 2.34 6.17 -2.39 -0.01 2.33 16 33 H 0.09 2.78 6.71 -2.39 -0.02 2.76 16 34 H 0.41 16.81 7.49 -92.71 -0.69 16.12 16 35 H 0.18 3.06 7.72 -2.91 -0.02 3.03 16 36 H 0.21 0.42 8.06 -2.91 -0.02 0.39 16 37 H 0.22 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.36 18.76 6.63 -92.71 -0.61 18.15 16 39 H 0.24 15.32 6.77 -92.71 -0.63 14.69 16 Total: -1.00 -74.98 327.86 2.69 -72.29 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.09 Total: 38.51 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.40 Total: -0.71 kcal Atomic # 7 Polarization: -139.69 SS G_CDS: -4.61 Total: -144.30 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 2.05 Total: 54.90 kcal Total: -74.98 2.69 -72.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715674540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.153 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds