Wall clock time and date at job start Tue Mar 31 2020 00:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46901 * 2 1 4 4 N 1.33324 * 126.10705 * 90.02423 * 3 2 1 5 5 C 1.30851 * 109.68276 * 179.97438 * 4 3 2 6 6 N 1.34493 * 109.16836 * 0.26641 * 5 4 3 7 7 H 0.97001 * 126.47793 * 179.70343 * 6 5 4 8 8 C 1.36662 * 126.10658 * 269.98280 * 3 2 1 9 9 C 1.46766 * 126.84681 * 0.06579 * 8 3 2 10 10 O 1.21688 * 119.99739 * 0.02562 * 9 8 3 11 11 N 1.34773 * 120.00356 * 180.02562 * 9 8 3 12 12 C 1.46496 * 120.00130 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47191 * 180.02562 * 12 11 9 14 14 C 1.30997 * 120.00499 * 127.15387 * 13 12 11 15 15 C 1.50702 * 119.99919 * 7.56008 * 14 13 12 16 16 N 1.46493 * 109.47402 * 127.00521 * 15 14 13 17 17 C 1.36938 * 120.00303 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99694 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00089 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00243 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00063 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47046 * 89.99963 * 21 19 17 23 23 H 1.48498 * 109.47460 * 210.00354 * 21 19 17 24 24 H 1.48507 * 109.46897 * 330.00345 * 21 19 17 25 25 H 1.08998 * 109.47250 * 299.99935 * 1 2 3 26 26 H 1.09004 * 109.47271 * 60.00081 * 1 2 3 27 27 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47250 * 240.00065 * 2 1 3 29 29 H 1.09000 * 109.46840 * 119.99674 * 2 1 3 30 30 H 1.08001 * 125.41697 * 179.97438 * 5 4 3 31 31 H 0.97003 * 119.99621 * 0.02562 * 11 9 8 32 32 H 1.09004 * 109.46937 * 300.00037 * 12 11 9 33 33 H 1.08998 * 109.47271 * 60.00105 * 12 11 9 34 34 H 1.08004 * 119.99547 * 307.15119 * 13 12 11 35 35 H 1.07998 * 120.00223 * 187.55504 * 14 13 12 36 36 H 1.09002 * 109.47205 * 247.00833 * 15 14 13 37 37 H 1.09004 * 109.47114 * 7.00345 * 15 14 13 38 38 H 0.97001 * 120.00094 * 0.02562 * 16 15 14 39 39 H 0.97004 * 119.99814 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2946 2.1615 1.0771 5 6 2.7133 3.3447 0.7072 6 7 2.7290 3.4074 -0.6362 7 1 2.9930 4.1697 -1.1749 8 6 2.3010 2.1800 -1.1041 9 6 2.1567 1.7747 -2.5073 10 8 1.7599 0.6571 -2.7800 11 7 2.4637 2.6401 -3.4938 12 6 2.3192 2.2357 -4.8944 13 6 2.7249 3.3768 -5.7912 14 6 3.6161 3.1856 -6.7320 15 6 4.1098 1.7934 -7.0306 16 7 3.9574 1.5176 -8.4612 17 6 4.3414 0.3054 -8.9696 18 1 4.7569 -0.4471 -8.3158 19 6 4.1965 0.0439 -10.3250 20 7 3.6906 0.9611 -11.1219 21 14 4.7210 -1.6095 -11.0186 22 1 3.5758 -2.5535 -10.9675 23 1 5.1595 -1.4389 -12.4271 24 1 5.8447 -2.1505 -10.2124 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.9963 4.1453 1.3744 31 1 2.7804 3.5309 -3.2763 32 1 2.9575 1.3744 -5.0915 33 1 1.2803 1.9705 -5.0906 34 1 2.2807 4.3523 -5.6582 35 1 3.9970 4.0257 -7.2938 36 1 5.1614 1.7139 -6.7552 37 1 3.5286 1.0711 -6.4574 38 1 3.5846 2.1936 -9.0485 39 1 3.5897 0.7784 -12.0692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715901113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:43 Heat of formation + Delta-G solvation = 48.183266 kcal Electronic energy + Delta-G solvation = -20529.092666 eV Core-core repulsion = 17280.430548 eV Total energy + Delta-G solvation = -3248.662118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.52465 -39.42095 -36.66758 -34.92126 -34.16658 -32.95781 -32.18789 -30.51429 -29.37059 -26.76302 -25.09031 -23.96462 -22.91515 -22.53002 -21.32194 -20.08935 -19.23226 -18.30121 -16.99930 -16.37638 -16.28520 -15.88398 -15.32836 -14.95475 -14.58729 -14.32949 -14.08567 -13.81604 -13.60708 -13.49404 -13.24603 -12.70090 -12.50718 -12.47350 -11.81387 -11.57875 -11.09500 -10.98693 -10.82383 -10.65411 -10.49749 -10.32838 -10.07071 -10.04866 -9.80745 -9.33769 -9.09998 -8.80521 -8.63817 -6.95588 -5.79544 -3.09094 1.03939 2.14318 2.55662 2.57553 3.14841 3.19541 3.43822 3.48976 3.50478 4.13195 4.53355 4.59536 4.72052 4.86247 4.98521 5.19468 5.33832 5.38495 5.41877 5.53276 5.54151 5.60632 5.80360 5.89664 5.93167 6.07425 6.14374 6.16370 6.22472 6.34901 6.46667 6.50468 6.79061 6.85180 7.05731 7.27049 7.62997 7.68063 8.01006 8.38795 9.50329 10.05347 10.40613 11.43203 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026026 B = 0.002945 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.595259 B = 9504.767798 C =10194.661907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C 0.101 3.899 4 N -0.498 5.498 5 C 0.217 3.783 6 N -0.556 5.556 7 H 0.422 0.578 8 C -0.089 4.089 9 C 0.590 3.410 10 O -0.516 6.516 11 N -0.723 5.723 12 C 0.142 3.858 13 C -0.203 4.203 14 C -0.105 4.105 15 C 0.161 3.839 16 N -0.728 5.728 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.215 0.785 31 H 0.391 0.609 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.028 0.972 37 H 0.036 0.964 38 H 0.385 0.615 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 9.123 23.424 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.033 4.033 4 N -0.218 5.218 5 C -0.067 4.067 6 N -0.162 5.162 7 H 0.261 0.739 8 C -0.204 4.204 9 C 0.376 3.624 10 O -0.391 6.391 11 N -0.374 5.374 12 C 0.020 3.980 13 C -0.223 4.223 14 C -0.124 4.124 15 C 0.034 3.966 16 N -0.372 5.372 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.231 0.769 31 H 0.224 0.776 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.218 0.782 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.409 7.826 23.964 25.439 hybrid contribution 0.604 0.890 -1.640 1.961 sum -2.804 8.716 22.324 24.129 Atomic orbital electron populations 1.21611 0.94334 1.01898 1.01677 1.20086 0.96275 0.88678 1.03864 1.21079 0.98618 0.97066 0.86555 1.70138 1.18403 1.02718 1.30514 1.25139 1.01577 0.97981 0.82040 1.43343 1.50806 1.13166 1.08836 0.73942 1.21016 1.16047 0.88160 0.95212 1.16830 0.78080 0.85043 0.82483 1.90862 1.45968 1.19594 1.82701 1.45936 1.68178 1.16471 1.06767 1.20610 1.02698 0.97118 0.77541 1.22567 1.00702 0.98835 1.00185 1.23325 0.94099 0.99443 0.95569 1.20019 0.97776 0.90596 0.88191 1.42263 1.76451 1.16697 1.01777 1.19247 1.34358 0.91866 0.91847 0.91020 1.24761 1.01740 0.98216 0.96167 1.69666 1.50768 1.33537 1.04197 0.86156 0.78227 0.83408 0.78208 1.21559 1.21722 1.20658 0.93003 0.92574 0.92076 0.88601 0.90619 0.76861 0.77568 0.88962 0.90706 0.87107 0.86830 0.95398 0.94611 0.78158 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.05 -0.59 5.93 -27.88 -0.17 -0.75 16 3 C 0.10 1.22 6.40 -82.51 -0.53 0.69 16 4 N -0.50 -5.51 11.20 -10.64 -0.12 -5.63 16 5 C 0.22 1.53 13.00 -90.58 -1.18 0.35 16 6 N -0.56 -3.76 6.07 -10.79 -0.07 -3.83 16 7 H 0.42 1.32 8.32 -40.82 -0.34 0.98 16 8 C -0.09 -0.98 7.08 -82.14 -0.58 -1.56 16 9 C 0.59 7.63 7.79 -12.82 -0.10 7.53 16 10 O -0.52 -8.48 14.82 5.20 0.08 -8.41 16 11 N -0.72 -7.82 5.54 -62.78 -0.35 -8.17 16 12 C 0.14 1.91 5.76 -5.20 -0.03 1.88 16 13 C -0.20 -2.59 9.63 -36.03 -0.35 -2.94 16 14 C -0.10 -1.63 9.63 -36.02 -0.35 -1.97 16 15 C 0.16 3.21 6.35 -5.20 -0.03 3.17 16 16 N -0.73 -18.56 5.59 -61.09 -0.34 -18.90 16 17 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.10 1.24 6.48 -51.93 -0.34 0.90 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.22 0.50 8.06 -52.49 -0.42 0.08 16 31 H 0.39 2.90 7.71 -40.82 -0.31 2.58 16 32 H 0.09 1.46 5.30 -51.93 -0.28 1.18 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.11 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.73 5.30 -51.93 -0.27 0.45 16 38 H 0.38 10.26 7.66 -40.82 -0.31 9.94 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -35.19 334.03 -8.45 -43.64 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.20 Total: 8.48 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -3.19 Total: -2.16 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.15 Total: -64.15 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.19 -8.45 -43.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715901113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.826 kcal (2) G-P(sol) polarization free energy of solvation -35.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds