Wall clock time and date at job start Tue Mar 31 2020 00:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46901 * 2 1 4 4 N 1.33324 * 126.10705 * 90.02423 * 3 2 1 5 5 C 1.30851 * 109.68276 * 179.97438 * 4 3 2 6 6 N 1.34493 * 109.16836 * 0.26641 * 5 4 3 7 7 H 0.97001 * 126.47793 * 179.70343 * 6 5 4 8 8 C 1.36662 * 126.10658 * 269.98280 * 3 2 1 9 9 C 1.46766 * 126.84681 * 0.06579 * 8 3 2 10 10 O 1.21688 * 119.99739 * 0.02562 * 9 8 3 11 11 N 1.34773 * 120.00356 * 180.02562 * 9 8 3 12 12 C 1.46496 * 120.00130 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47191 * 180.02562 * 12 11 9 14 14 C 1.30997 * 120.00499 * 127.15387 * 13 12 11 15 15 C 1.50702 * 119.99919 * 7.56008 * 14 13 12 16 16 N 1.46493 * 109.47402 * 127.00521 * 15 14 13 17 17 C 1.36938 * 120.00303 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99694 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00089 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00243 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00063 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47046 * 89.99963 * 21 19 17 23 23 H 1.48498 * 109.47460 * 210.00354 * 21 19 17 24 24 H 1.48507 * 109.46897 * 330.00345 * 21 19 17 25 25 H 1.08998 * 109.47250 * 299.99935 * 1 2 3 26 26 H 1.09004 * 109.47271 * 60.00081 * 1 2 3 27 27 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47250 * 240.00065 * 2 1 3 29 29 H 1.09000 * 109.46840 * 119.99674 * 2 1 3 30 30 H 1.08001 * 125.41697 * 179.97438 * 5 4 3 31 31 H 0.97003 * 119.99621 * 0.02562 * 11 9 8 32 32 H 1.09004 * 109.46937 * 300.00037 * 12 11 9 33 33 H 1.08998 * 109.47271 * 60.00105 * 12 11 9 34 34 H 1.08004 * 119.99547 * 307.15119 * 13 12 11 35 35 H 1.07998 * 120.00223 * 187.55504 * 14 13 12 36 36 H 1.09002 * 109.47205 * 247.00833 * 15 14 13 37 37 H 1.09004 * 109.47114 * 7.00345 * 15 14 13 38 38 H 0.97001 * 120.00094 * 0.02562 * 16 15 14 39 39 H 0.97004 * 119.99814 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2946 2.1615 1.0771 5 6 2.7133 3.3447 0.7072 6 7 2.7290 3.4074 -0.6362 7 1 2.9930 4.1697 -1.1749 8 6 2.3010 2.1800 -1.1041 9 6 2.1567 1.7747 -2.5073 10 8 1.7599 0.6571 -2.7800 11 7 2.4637 2.6401 -3.4938 12 6 2.3192 2.2357 -4.8944 13 6 2.7249 3.3768 -5.7912 14 6 3.6161 3.1856 -6.7320 15 6 4.1098 1.7934 -7.0306 16 7 3.9574 1.5176 -8.4612 17 6 4.3414 0.3054 -8.9696 18 1 4.7569 -0.4471 -8.3158 19 6 4.1965 0.0439 -10.3250 20 7 3.6906 0.9611 -11.1219 21 14 4.7210 -1.6095 -11.0186 22 1 3.5758 -2.5535 -10.9675 23 1 5.1595 -1.4389 -12.4271 24 1 5.8447 -2.1505 -10.2124 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.9963 4.1453 1.3744 31 1 2.7804 3.5309 -3.2763 32 1 2.9575 1.3744 -5.0915 33 1 1.2803 1.9705 -5.0906 34 1 2.2807 4.3523 -5.6582 35 1 3.9970 4.0257 -7.2938 36 1 5.1614 1.7139 -6.7552 37 1 3.5286 1.0711 -6.4574 38 1 3.5846 2.1936 -9.0485 39 1 3.5897 0.7784 -12.0692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715901113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:43 Heat of formation + Delta-G solvation = 22.521273 kcal Electronic energy + Delta-G solvation = -20530.205454 eV Core-core repulsion = 17280.430548 eV Total energy + Delta-G solvation = -3249.774906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.24081 -40.45172 -38.00822 -36.26914 -35.24824 -34.37825 -33.07009 -32.29912 -30.24048 -28.12838 -26.62837 -24.88080 -24.41616 -23.65860 -22.16838 -21.05738 -20.14417 -19.60495 -18.71100 -17.58136 -17.18389 -16.79461 -16.59494 -16.17919 -15.73688 -15.51479 -15.27566 -15.08737 -14.91130 -14.75081 -14.34433 -14.21756 -13.90389 -13.31962 -13.28651 -12.93529 -12.75355 -12.41963 -12.18718 -12.00910 -11.92378 -11.69475 -11.53312 -11.04928 -11.03353 -10.96571 -10.44605 -10.03319 -9.52881 -9.01187 -7.99311 -5.28834 0.23831 0.99509 1.46139 1.48103 1.56498 1.85579 1.91656 2.22229 2.26520 2.55041 3.34412 3.50941 3.71906 3.80498 4.05851 4.11278 4.15966 4.21625 4.31858 4.47815 4.52924 4.59453 4.65709 4.75166 4.84328 4.89176 5.01826 5.07614 5.19934 5.26642 5.31256 5.44526 5.51729 5.55010 5.82442 6.23582 6.32559 6.44190 6.92854 7.06650 7.29740 8.03171 8.27712 9.24073 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026026 B = 0.002945 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.595259 B = 9504.767798 C =10194.661907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 C 0.084 3.916 4 N -0.535 5.535 5 C 0.243 3.757 6 N -0.539 5.539 7 H 0.441 0.559 8 C -0.106 4.106 9 C 0.588 3.412 10 O -0.560 6.560 11 N -0.706 5.706 12 C 0.143 3.857 13 C -0.160 4.160 14 C -0.131 4.131 15 C 0.159 3.841 16 N -0.741 5.741 17 C -0.251 4.251 18 H 0.073 0.927 19 C -0.073 4.073 20 N -0.968 5.968 21 Si 0.975 3.025 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.270 1.270 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.265 0.735 31 H 0.412 0.588 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.152 0.848 35 H 0.126 0.874 36 H 0.024 0.976 37 H 0.033 0.967 38 H 0.376 0.624 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 10.932 25.214 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.050 4.050 4 N -0.255 5.255 5 C -0.042 4.042 6 N -0.145 5.145 7 H 0.283 0.717 8 C -0.222 4.222 9 C 0.375 3.625 10 O -0.439 6.439 11 N -0.357 5.357 12 C 0.020 3.980 13 C -0.179 4.179 14 C -0.151 4.151 15 C 0.034 3.966 16 N -0.384 5.384 17 C -0.383 4.383 18 H 0.091 0.909 19 C -0.265 4.265 20 N -0.618 5.618 21 Si 0.803 3.197 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.194 1.194 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.281 0.719 31 H 0.248 0.752 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.170 0.830 35 H 0.144 0.856 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.208 0.792 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.088 9.697 25.784 27.719 hybrid contribution 0.502 0.392 -2.008 2.107 sum -2.585 10.088 23.775 25.956 Atomic orbital electron populations 1.21538 0.93809 1.02379 1.01004 1.20040 0.96776 0.89219 1.03073 1.21183 0.99044 0.97328 0.87483 1.70133 1.20356 1.04405 1.30610 1.26123 0.98083 0.97615 0.82357 1.43233 1.49875 1.12375 1.09067 0.71651 1.20608 1.17871 0.89969 0.93771 1.17116 0.77291 0.84556 0.83500 1.90840 1.48013 1.21533 1.83501 1.45643 1.67620 1.17190 1.05290 1.20407 1.01561 0.96848 0.79197 1.22769 0.97789 0.99825 0.97541 1.23054 0.96678 0.97213 0.98122 1.20099 0.97676 0.93695 0.85146 1.42469 1.76241 1.15677 1.04033 1.19632 1.33506 0.92916 0.92244 0.90871 1.25586 1.02545 1.01790 0.96608 1.69810 1.52386 1.35426 1.04177 0.85131 0.78021 0.79264 0.77294 1.21349 1.21751 1.19449 0.92425 0.94238 0.91087 0.90663 0.89999 0.71922 0.75181 0.91682 0.91552 0.83014 0.85629 0.95808 0.94924 0.79199 0.93805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.89 71.98 0.71 -2.09 16 2 C -0.05 -1.26 5.93 29.85 0.18 -1.08 16 3 C 0.08 1.98 6.40 41.96 0.27 2.25 16 4 N -0.53 -10.78 11.20 -187.59 -2.10 -12.89 16 5 C 0.24 2.53 13.00 180.33 2.35 4.88 16 6 N -0.54 -5.58 6.07 -188.04 -1.14 -6.72 16 7 H 0.44 0.96 8.32 -92.71 -0.77 0.18 16 8 C -0.11 -2.20 7.08 40.01 0.28 -1.92 16 9 C 0.59 15.02 7.79 86.47 0.67 15.69 16 10 O -0.56 -19.14 14.82 -4.31 -0.06 -19.20 16 11 N -0.71 -14.14 5.54 -470.74 -2.61 -16.75 16 12 C 0.14 3.71 5.76 85.63 0.49 4.21 16 13 C -0.16 -3.66 9.63 25.65 0.25 -3.42 16 14 C -0.13 -3.90 9.63 25.65 0.25 -3.65 16 15 C 0.16 6.41 6.35 85.63 0.54 6.96 16 16 N -0.74 -38.44 5.59 -347.19 -1.94 -40.38 16 17 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 18 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 20 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 21 Si 0.97 46.84 29.55 68.60 2.03 48.86 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 2.08 6.48 -2.39 -0.02 2.07 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.27 -0.24 8.06 -2.91 -0.02 -0.26 16 31 H 0.41 4.80 7.71 -92.71 -0.71 4.08 16 32 H 0.07 2.09 5.30 -2.39 -0.01 2.08 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.03 1.36 5.30 -2.39 -0.01 1.34 16 38 H 0.38 20.43 7.66 -92.71 -0.71 19.72 16 39 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -79.04 334.03 0.65 -78.39 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -1.10 Total: 23.63 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 7.30 Total: 4.46 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -7.51 Total: -136.13 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.06 Total: -19.20 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -79.04 0.65 -78.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715901113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.911 kcal (2) G-P(sol) polarization free energy of solvation -79.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds