Wall clock time and date at job start Tue Mar 31 2020 00:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46725 * 2 1 4 4 N 1.33319 * 126.11058 * 90.02454 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47165 * 179.70725 * 6 5 4 8 8 C 1.36670 * 126.10423 * 269.98138 * 3 2 1 9 9 C 1.46757 * 126.84532 * 0.06955 * 8 3 2 10 10 O 1.21682 * 120.00349 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00161 * 180.02562 * 9 8 3 12 12 C 1.46498 * 120.00165 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47062 * 180.02562 * 12 11 9 14 14 C 1.31002 * 120.00494 * 124.99972 * 13 12 11 15 15 C 1.50695 * 120.00494 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.47359 * 124.99816 * 15 14 13 17 17 C 1.36938 * 120.00095 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99965 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99814 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00051 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99709 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47313 * 60.00404 * 21 19 17 23 23 H 1.48500 * 109.47091 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47250 * 300.00040 * 21 19 17 25 25 H 1.09000 * 109.47194 * 60.00364 * 1 2 3 26 26 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47141 * 299.99866 * 1 2 3 28 28 H 1.08997 * 109.47141 * 240.00134 * 2 1 3 29 29 H 1.09000 * 109.47194 * 119.99636 * 2 1 3 30 30 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99259 * 0.02562 * 11 9 8 32 32 H 1.09001 * 109.47141 * 299.99856 * 12 11 9 33 33 H 1.08990 * 109.47096 * 59.99937 * 12 11 9 34 34 H 1.08009 * 119.99784 * 304.99939 * 13 12 11 35 35 H 1.08003 * 119.99704 * 359.97438 * 14 13 12 36 36 H 1.08999 * 109.47279 * 245.00128 * 15 14 13 37 37 H 1.09003 * 109.47266 * 4.99949 * 15 14 13 38 38 H 0.96998 * 119.99400 * 359.97438 * 16 15 14 39 39 H 0.97001 * 119.99811 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2946 2.1615 1.0771 5 6 2.7133 3.3448 0.7071 6 7 2.7289 3.4074 -0.6363 7 1 2.9929 4.1697 -1.1750 8 6 2.3010 2.1800 -1.1042 9 6 2.1567 1.7746 -2.5073 10 8 1.7598 0.6572 -2.7800 11 7 2.4637 2.6401 -3.4938 12 6 2.3191 2.2356 -4.8944 13 6 2.7248 3.3767 -5.7913 14 6 3.6466 3.1964 -6.7044 15 6 4.0527 4.3376 -7.6009 16 7 5.5015 4.5366 -7.5123 17 6 6.1028 5.5256 -8.2441 18 1 5.5090 6.1591 -8.8863 19 6 7.4754 5.7144 -8.1597 20 7 8.1990 4.9426 -7.3766 21 14 8.2956 7.0639 -9.1574 22 1 7.7280 8.3804 -8.7702 23 1 9.7567 7.0571 -8.8922 24 1 8.0543 6.8267 -10.6034 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9963 4.1454 1.3744 31 1 2.7804 3.5308 -3.2764 32 1 2.9574 1.3744 -5.0917 33 1 1.2803 1.9705 -5.0906 34 1 2.2556 4.3433 -5.6811 35 1 4.1162 2.2300 -6.8143 36 1 3.7801 4.1057 -8.6304 37 1 3.5412 5.2471 -7.2857 38 1 6.0346 3.9682 -6.9346 39 1 9.1582 5.0743 -7.3180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715901121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:47 Heat of formation + Delta-G solvation = 38.662425 kcal Electronic energy + Delta-G solvation = -20294.892770 eV Core-core repulsion = 17045.817797 eV Total energy + Delta-G solvation = -3249.074973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.49321 -39.43658 -36.41397 -35.03368 -34.25124 -32.97174 -32.19751 -30.69586 -29.36767 -27.24838 -24.70702 -23.81575 -22.91284 -22.06889 -21.20388 -20.22485 -19.47564 -18.77671 -17.17518 -16.44822 -16.14642 -15.90402 -15.01666 -14.94573 -14.73930 -14.31997 -14.04360 -13.79166 -13.70603 -13.53132 -13.31528 -12.85619 -12.50563 -12.12246 -11.94049 -11.60899 -11.13708 -11.10718 -10.86620 -10.72059 -10.65477 -10.29653 -10.18051 -10.08010 -9.87052 -9.43300 -9.11212 -8.83970 -8.71098 -7.02812 -5.84868 -3.14961 1.05193 2.14665 2.59451 2.61343 3.12574 3.18804 3.38348 3.42955 3.44083 4.16407 4.52508 4.55113 4.73213 4.84728 4.94604 5.14955 5.31320 5.35900 5.43581 5.47638 5.51468 5.53388 5.70761 5.88845 5.89547 6.04042 6.06619 6.10650 6.18863 6.34427 6.37578 6.48470 6.79486 6.89264 7.04180 7.23843 7.60905 7.65467 7.95498 8.33312 9.44610 10.00144 10.35389 11.37693 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026056 B = 0.002760 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.333451 B =10142.804826 C =10827.144816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.101 3.899 4 N -0.499 5.499 5 C 0.220 3.780 6 N -0.555 5.555 7 H 0.424 0.576 8 C -0.092 4.092 9 C 0.593 3.407 10 O -0.523 6.523 11 N -0.723 5.723 12 C 0.157 3.843 13 C -0.206 4.206 14 C -0.102 4.102 15 C 0.172 3.828 16 N -0.730 5.730 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.216 0.784 31 H 0.396 0.604 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.032 0.968 37 H 0.025 0.975 38 H 0.385 0.615 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.487 -4.382 14.768 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.034 4.034 4 N -0.219 5.219 5 C -0.064 4.064 6 N -0.160 5.160 7 H 0.263 0.737 8 C -0.207 4.207 9 C 0.379 3.621 10 O -0.399 6.399 11 N -0.374 5.374 12 C 0.035 3.965 13 C -0.225 4.225 14 C -0.122 4.122 15 C 0.045 3.955 16 N -0.374 5.374 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.232 0.768 31 H 0.230 0.770 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.219 0.781 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.841 -5.345 15.213 21.914 hybrid contribution 1.232 1.969 -1.291 2.657 sum -13.608 -3.376 13.922 19.758 Atomic orbital electron populations 1.21611 0.94396 1.01775 1.01709 1.20068 0.96201 0.88745 1.03774 1.21063 0.98711 0.97018 0.86594 1.70140 1.18542 1.02728 1.30461 1.25170 1.01239 0.97935 0.82067 1.43376 1.50462 1.13213 1.08909 0.73694 1.20958 1.16330 0.88309 0.95121 1.16833 0.77748 0.84901 0.82579 1.90822 1.46552 1.19700 1.82870 1.45961 1.67993 1.16844 1.06592 1.20352 1.01744 0.96228 0.78185 1.22675 1.01851 0.98968 0.99033 1.23369 0.93679 0.99944 0.95187 1.19833 0.87310 0.92716 0.95657 1.42288 1.00730 1.40360 1.54035 1.19195 0.90674 1.08580 1.19111 0.91102 1.24771 0.96301 0.99645 1.00156 1.69654 1.05858 1.40894 1.41685 0.86231 0.78454 0.81497 0.79770 1.21208 1.21598 1.21138 0.92633 0.92165 0.92942 0.88736 0.90617 0.76763 0.77006 0.90849 0.90742 0.86793 0.87152 0.95031 0.95699 0.78148 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.05 -0.56 5.93 -27.88 -0.17 -0.72 16 3 C 0.10 1.23 6.40 -82.51 -0.53 0.70 16 4 N -0.50 -5.77 11.20 -10.64 -0.12 -5.88 16 5 C 0.22 1.76 13.01 -90.57 -1.18 0.59 16 6 N -0.55 -4.38 6.07 -10.79 -0.07 -4.45 16 7 H 0.42 2.06 8.32 -40.82 -0.34 1.72 16 8 C -0.09 -1.04 7.08 -82.14 -0.58 -1.62 16 9 C 0.59 7.52 7.79 -12.82 -0.10 7.42 16 10 O -0.52 -8.00 14.82 5.20 0.08 -7.92 16 11 N -0.72 -7.93 5.54 -62.78 -0.35 -8.28 16 12 C 0.16 1.86 6.11 -5.20 -0.03 1.83 16 13 C -0.21 -2.61 9.24 -36.03 -0.33 -2.94 16 14 C -0.10 -1.58 9.24 -36.03 -0.33 -1.91 16 15 C 0.17 3.32 6.70 -5.19 -0.03 3.28 16 16 N -0.73 -18.17 5.59 -61.08 -0.34 -18.51 16 17 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.16 6.48 -51.93 -0.34 0.82 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.22 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.40 3.51 7.71 -40.82 -0.31 3.20 16 32 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 1.35 7.84 -52.48 -0.41 0.94 16 35 H 0.11 1.68 7.84 -52.48 -0.41 1.27 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.48 7.79 -51.93 -0.40 0.07 16 38 H 0.38 10.10 7.66 -40.82 -0.31 9.78 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -34.07 338.52 -8.60 -42.67 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.44 Total: 9.17 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.16 Total: -1.74 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.15 Total: -64.25 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.08 Total: -7.92 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.07 -8.60 -42.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715901121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.331 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds