Wall clock time and date at job start Tue Mar 31 2020 00:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46725 * 2 1 4 4 N 1.33319 * 126.11058 * 90.02454 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47165 * 179.70725 * 6 5 4 8 8 C 1.36670 * 126.10423 * 269.98138 * 3 2 1 9 9 C 1.46757 * 126.84532 * 0.06955 * 8 3 2 10 10 O 1.21682 * 120.00349 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00161 * 180.02562 * 9 8 3 12 12 C 1.46498 * 120.00165 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47062 * 180.02562 * 12 11 9 14 14 C 1.31002 * 120.00494 * 124.99972 * 13 12 11 15 15 C 1.50695 * 120.00494 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.47359 * 124.99816 * 15 14 13 17 17 C 1.36938 * 120.00095 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99965 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99814 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00051 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99709 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47313 * 60.00404 * 21 19 17 23 23 H 1.48500 * 109.47091 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47250 * 300.00040 * 21 19 17 25 25 H 1.09000 * 109.47194 * 60.00364 * 1 2 3 26 26 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47141 * 299.99866 * 1 2 3 28 28 H 1.08997 * 109.47141 * 240.00134 * 2 1 3 29 29 H 1.09000 * 109.47194 * 119.99636 * 2 1 3 30 30 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99259 * 0.02562 * 11 9 8 32 32 H 1.09001 * 109.47141 * 299.99856 * 12 11 9 33 33 H 1.08990 * 109.47096 * 59.99937 * 12 11 9 34 34 H 1.08009 * 119.99784 * 304.99939 * 13 12 11 35 35 H 1.08003 * 119.99704 * 359.97438 * 14 13 12 36 36 H 1.08999 * 109.47279 * 245.00128 * 15 14 13 37 37 H 1.09003 * 109.47266 * 4.99949 * 15 14 13 38 38 H 0.96998 * 119.99400 * 359.97438 * 16 15 14 39 39 H 0.97001 * 119.99811 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2946 2.1615 1.0771 5 6 2.7133 3.3448 0.7071 6 7 2.7289 3.4074 -0.6363 7 1 2.9929 4.1697 -1.1750 8 6 2.3010 2.1800 -1.1042 9 6 2.1567 1.7746 -2.5073 10 8 1.7598 0.6572 -2.7800 11 7 2.4637 2.6401 -3.4938 12 6 2.3191 2.2356 -4.8944 13 6 2.7248 3.3767 -5.7913 14 6 3.6466 3.1964 -6.7044 15 6 4.0527 4.3376 -7.6009 16 7 5.5015 4.5366 -7.5123 17 6 6.1028 5.5256 -8.2441 18 1 5.5090 6.1591 -8.8863 19 6 7.4754 5.7144 -8.1597 20 7 8.1990 4.9426 -7.3766 21 14 8.2956 7.0639 -9.1574 22 1 7.7280 8.3804 -8.7702 23 1 9.7567 7.0571 -8.8922 24 1 8.0543 6.8267 -10.6034 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9963 4.1454 1.3744 31 1 2.7804 3.5308 -3.2764 32 1 2.9574 1.3744 -5.0917 33 1 1.2803 1.9705 -5.0906 34 1 2.2556 4.3433 -5.6811 35 1 4.1162 2.2300 -6.8143 36 1 3.7801 4.1057 -8.6304 37 1 3.5412 5.2471 -7.2857 38 1 6.0346 3.9682 -6.9346 39 1 9.1582 5.0743 -7.3180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715901121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:45 Heat of formation + Delta-G solvation = 14.797910 kcal Electronic energy + Delta-G solvation = -20295.927613 eV Core-core repulsion = 17045.817797 eV Total energy + Delta-G solvation = -3250.109816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.24735 -40.42029 -37.71730 -36.38492 -35.23773 -34.38091 -33.12306 -32.34929 -30.27583 -28.60000 -26.16694 -24.92272 -23.89297 -23.42501 -22.09580 -21.27459 -20.45887 -19.68194 -19.09082 -17.31487 -17.15430 -16.79889 -16.67245 -15.94549 -15.72313 -15.54500 -15.25526 -15.12000 -14.86045 -14.80036 -14.36543 -14.21618 -13.52331 -13.34987 -13.30623 -12.90603 -12.72022 -12.41116 -12.25737 -12.04093 -11.98007 -11.80870 -11.54748 -11.08456 -11.04593 -10.95980 -10.46273 -10.08179 -9.53380 -9.03561 -7.97934 -5.27973 0.22965 1.00397 1.47378 1.50187 1.56529 1.83633 1.92457 2.21213 2.27333 2.55650 3.35966 3.49803 3.67034 3.77510 4.04033 4.08619 4.20270 4.21459 4.43703 4.49043 4.53648 4.65509 4.65647 4.70842 4.76784 4.90613 4.98516 5.07439 5.17178 5.26155 5.31850 5.45734 5.52189 5.62469 5.80293 6.24031 6.27966 6.39918 6.90729 7.02062 7.30303 8.04285 8.28023 9.25270 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026056 B = 0.002760 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.333451 B =10142.804826 C =10827.144816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C 0.085 3.915 4 N -0.534 5.534 5 C 0.240 3.760 6 N -0.543 5.543 7 H 0.439 0.561 8 C -0.110 4.110 9 C 0.592 3.408 10 O -0.556 6.556 11 N -0.714 5.714 12 C 0.159 3.841 13 C -0.163 4.163 14 C -0.129 4.129 15 C 0.173 3.827 16 N -0.744 5.744 17 C -0.250 4.250 18 H 0.078 0.922 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.976 3.024 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.278 1.278 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.262 0.738 31 H 0.408 0.592 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.374 0.626 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.305 -2.761 15.422 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.050 4.050 4 N -0.254 5.254 5 C -0.045 4.045 6 N -0.148 5.148 7 H 0.281 0.719 8 C -0.226 4.226 9 C 0.380 3.620 10 O -0.435 6.435 11 N -0.365 5.365 12 C 0.037 3.963 13 C -0.182 4.182 14 C -0.149 4.149 15 C 0.047 3.953 16 N -0.387 5.387 17 C -0.382 4.382 18 H 0.096 0.904 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.804 3.196 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.204 1.204 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.277 0.723 31 H 0.244 0.756 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.206 0.794 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.696 -3.677 15.837 22.599 hybrid contribution 1.382 1.472 -1.413 2.465 sum -14.314 -2.205 14.424 20.440 Atomic orbital electron populations 1.21541 0.93638 1.02484 1.01025 1.20052 0.96873 0.88820 1.03189 1.21260 0.98991 0.97476 0.87288 1.70139 1.20304 1.04242 1.30686 1.26088 0.98288 0.97729 0.82372 1.43314 1.49753 1.12617 1.09153 0.71890 1.20724 1.17891 0.89785 0.94220 1.17007 0.77205 0.84538 0.83281 1.90802 1.48125 1.21075 1.83451 1.45803 1.67569 1.17235 1.05916 1.20277 1.02079 0.95500 0.78478 1.22754 0.99239 0.99574 0.96643 1.23025 0.96148 0.98871 0.96823 1.19916 0.84341 0.94458 0.96564 1.42526 1.03053 1.39653 1.53497 1.19634 0.91145 1.08696 1.18693 0.90378 1.25612 0.97095 1.02257 1.01775 1.69815 1.05682 1.42867 1.43648 0.85180 0.76869 0.79065 0.78450 1.20078 1.22184 1.20391 0.94026 0.90810 0.92696 0.90300 0.90088 0.72269 0.75609 0.91846 0.89750 0.85061 0.87438 0.95224 0.94774 0.79415 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.89 71.98 0.71 -1.87 16 2 C -0.05 -1.16 5.93 29.85 0.18 -0.98 16 3 C 0.08 2.02 6.40 41.97 0.27 2.29 16 4 N -0.53 -11.53 11.20 -187.58 -2.10 -13.63 16 5 C 0.24 3.16 13.01 180.33 2.35 5.51 16 6 N -0.54 -7.30 6.07 -188.04 -1.14 -8.44 16 7 H 0.44 3.00 8.32 -92.71 -0.77 2.23 16 8 C -0.11 -2.40 7.08 40.01 0.28 -2.12 16 9 C 0.59 14.66 7.79 86.47 0.67 15.34 16 10 O -0.56 -17.15 14.82 -4.29 -0.06 -17.22 16 11 N -0.71 -14.54 5.54 -470.76 -2.61 -17.15 16 12 C 0.16 3.52 6.11 85.63 0.52 4.04 16 13 C -0.16 -3.78 9.24 25.64 0.24 -3.54 16 14 C -0.13 -3.86 9.24 25.64 0.24 -3.63 16 15 C 0.17 6.53 6.70 85.63 0.57 7.11 16 16 N -0.74 -37.05 5.59 -347.17 -1.94 -38.99 16 17 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 20 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 21 Si 0.98 45.04 29.55 68.60 2.03 47.07 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 2.02 6.48 -2.39 -0.02 2.00 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.26 0.67 8.06 -2.91 -0.02 0.64 16 31 H 0.41 6.28 7.71 -92.71 -0.71 5.57 16 32 H 0.06 1.58 7.79 -2.39 -0.02 1.56 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.13 2.66 7.84 -2.91 -0.02 2.63 16 35 H 0.11 3.27 7.84 -2.91 -0.02 3.25 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.03 1.24 7.79 -2.39 -0.02 1.22 16 38 H 0.37 19.90 7.66 -92.71 -0.71 19.19 16 39 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -73.92 338.52 0.68 -73.24 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -1.11 Total: 27.90 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 7.34 Total: 5.51 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -7.51 Total: -136.50 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.06 Total: -17.22 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.92 0.68 -73.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715901121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.041 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds