Wall clock time and date at job start Tue Mar 31 2020 00:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47313 * 2 1 4 4 C 1.35371 * 126.38166 * 85.00121 * 3 2 1 5 5 C 1.41508 * 105.49926 * 180.02562 * 4 3 2 6 6 C 1.47712 * 126.51468 * 179.97438 * 5 4 3 7 7 O 1.21574 * 120.00032 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99720 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99908 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47451 * 174.42330 * 9 8 6 11 11 N 1.46496 * 115.54910 * 324.37279 * 10 9 8 12 12 C 1.36939 * 119.99805 * 294.99438 * 11 10 9 13 13 H 1.08001 * 120.00336 * 356.89341 * 12 11 10 14 14 C 1.38814 * 120.00249 * 176.89294 * 12 11 10 15 15 N 1.31621 * 119.99789 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00267 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47153 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47173 * 119.99616 * 16 14 12 19 19 H 1.48490 * 109.47500 * 239.99860 * 16 14 12 20 20 C 1.52996 * 117.49739 * 110.03425 * 10 9 8 21 21 C 1.52998 * 117.50278 * 178.69641 * 10 9 8 22 22 N 1.31805 * 106.96480 * 0.24334 * 5 4 3 23 23 N 1.28470 * 110.07578 * 359.59229 * 22 5 4 24 24 H 0.96993 * 124.89100 * 180.20607 * 23 22 5 25 25 H 1.09004 * 109.46818 * 299.99663 * 1 2 3 26 26 H 1.08994 * 109.47286 * 59.99544 * 1 2 3 27 27 H 1.08999 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46818 * 240.00337 * 2 1 3 29 29 H 1.08994 * 109.47286 * 120.00455 * 2 1 3 30 30 H 1.07996 * 127.24882 * 0.02562 * 4 3 2 31 31 H 0.96997 * 120.00621 * 0.02562 * 8 6 5 32 32 H 1.09007 * 109.47052 * 54.42484 * 9 8 6 33 33 H 1.08994 * 109.47813 * 294.43033 * 9 8 6 34 34 H 0.96998 * 120.00841 * 115.27131 * 11 10 9 35 35 H 0.96997 * 120.00046 * 179.97438 * 15 14 12 36 36 H 1.08997 * 117.49987 * 215.00514 * 20 10 9 37 37 H 1.09003 * 117.50198 * 0.03216 * 20 10 9 38 38 H 1.09005 * 117.49497 * 359.97438 * 21 10 9 39 39 H 1.08996 * 117.50169 * 144.97361 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2105 2.2095 1.0857 5 6 2.6921 3.4415 0.5832 6 6 3.0409 4.6381 1.3760 7 8 2.9230 4.6212 2.5859 8 7 3.4907 5.7482 0.7581 9 6 3.8360 6.9351 1.5443 10 6 4.4459 7.9958 0.6256 11 7 5.2816 7.4836 -0.4632 12 6 6.4513 6.8307 -0.1794 13 1 6.7830 6.7372 0.8442 14 6 7.2109 6.2890 -1.2072 15 7 6.8065 6.4024 -2.4546 16 14 8.8069 5.3989 -0.8201 17 1 9.0363 5.4094 0.6470 18 1 8.7196 3.9956 -1.2979 19 1 9.9340 6.0846 -1.5016 20 6 3.6171 9.2517 0.3491 21 6 4.8474 9.3305 1.2565 22 7 2.7648 3.3203 -0.7273 23 7 2.3881 2.1447 -1.0830 24 1 2.3601 1.8242 -1.9980 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.0243 1.9525 2.1180 31 1 3.5851 5.7616 -0.2072 32 1 4.5578 6.6633 2.3146 33 1 2.9370 7.3344 2.0136 34 1 5.0085 7.6105 -1.3852 35 1 7.3374 6.0242 -3.1729 36 1 3.6937 9.6970 -0.6429 37 1 2.6376 9.3227 0.8221 38 1 4.6766 9.4532 2.3261 39 1 5.7336 9.8274 0.8618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716676255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:57 Heat of formation + Delta-G solvation = 67.607062 kcal Electronic energy + Delta-G solvation = -21414.956769 eV Core-core repulsion = 18167.136930 eV Total energy + Delta-G solvation = -3247.819839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.52586 -38.91669 -37.32621 -34.45426 -33.44730 -33.04782 -31.67185 -29.65539 -29.34763 -26.72344 -23.92040 -23.88515 -23.11572 -21.78187 -20.96638 -19.51895 -18.90573 -17.59285 -17.07007 -16.58232 -15.71568 -15.62999 -14.72798 -14.62462 -14.30615 -14.19471 -13.92957 -13.59698 -13.40096 -13.06869 -12.91016 -12.64489 -12.24009 -11.85527 -11.79536 -11.40723 -10.97363 -10.90193 -10.86585 -10.59815 -10.31412 -10.18469 -9.72943 -9.62495 -9.28520 -9.22096 -8.87425 -8.84518 -8.29908 -7.06241 -5.81418 -3.11815 1.87104 2.23402 2.96109 3.41483 3.48522 3.50535 3.72820 3.89727 4.43894 4.52640 4.60673 4.63964 4.83796 5.00936 5.27983 5.28915 5.35906 5.41559 5.53641 5.56534 5.61936 5.69556 5.75253 5.89998 5.97436 6.02013 6.17994 6.27537 6.44690 6.49342 6.53457 6.66529 6.82505 7.05841 7.13038 7.74290 7.95380 8.30129 8.36044 8.79138 9.48168 10.00112 10.35803 11.40276 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.005316 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.725825 B = 5265.664059 C = 6453.593128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.006 3.994 4 C -0.178 4.178 5 C -0.005 4.005 6 C 0.597 3.403 7 O -0.554 6.554 8 N -0.683 5.683 9 C 0.151 3.849 10 C 0.128 3.872 11 N -0.688 5.688 12 C -0.232 4.232 13 H 0.072 0.928 14 C -0.008 4.008 15 N -0.930 5.930 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.186 4.186 21 C -0.191 4.191 22 N -0.243 5.243 23 N -0.381 5.381 24 H 0.442 0.558 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.416 0.584 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.388 0.612 35 H 0.254 0.746 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 -8.877 2.861 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.206 4.206 5 C -0.166 4.166 6 C 0.381 3.619 7 O -0.432 6.432 8 N -0.334 5.334 9 C 0.024 3.976 10 C 0.034 3.966 11 N -0.328 5.328 12 C -0.363 4.363 13 H 0.090 0.910 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.735 3.265 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.219 1.219 20 C -0.224 4.224 21 C -0.232 4.232 22 N -0.079 5.079 23 N -0.096 5.096 24 H 0.286 0.714 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.177 0.823 31 H 0.254 0.746 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.224 0.776 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.250 -8.341 2.831 15.088 hybrid contribution 0.832 -1.013 -0.504 1.404 sum -11.418 -9.354 2.326 14.943 Atomic orbital electron populations 1.21781 0.94191 1.02015 1.02666 1.20079 0.96269 0.88923 1.03847 1.21395 1.06129 0.96805 0.87578 1.21455 1.07093 0.92515 0.99541 1.22029 1.07663 0.97030 0.89868 1.16865 0.77554 0.81316 0.86181 1.90731 1.55946 1.83251 1.13234 1.45651 1.63325 1.11960 1.12454 1.21115 0.98228 0.84857 0.93354 1.20204 0.96399 0.86232 0.93757 1.41803 1.22082 1.66442 1.02457 1.19182 0.96995 1.27079 0.93056 0.91040 1.24706 0.99201 1.01189 0.95269 1.69663 1.39480 1.50465 0.98141 0.86154 0.83547 0.79217 0.77542 1.20444 1.21968 1.21876 1.23191 0.95220 1.02790 1.01169 1.23369 0.98440 1.03819 0.97556 1.73738 1.16796 1.02109 1.15219 1.43345 1.47751 1.08707 1.09747 0.71356 0.91878 0.92714 0.91925 0.90757 0.89180 0.82316 0.74574 0.91368 0.92235 0.77635 0.93566 0.89102 0.89372 0.89874 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.64 16 2 C -0.05 -0.40 6.49 -27.88 -0.18 -0.58 16 3 C 0.01 0.08 6.48 -82.21 -0.53 -0.46 16 4 C -0.18 -2.65 10.73 -39.36 -0.42 -3.07 16 5 C 0.00 -0.08 7.13 -82.76 -0.59 -0.67 16 6 C 0.60 12.15 7.82 -12.39 -0.10 12.05 16 7 O -0.55 -12.19 16.92 5.30 0.09 -12.10 16 8 N -0.68 -13.82 5.39 -61.29 -0.33 -14.15 16 9 C 0.15 2.92 5.69 -4.04 -0.02 2.89 16 10 C 0.13 2.52 2.46 -131.82 -0.32 2.20 16 11 N -0.69 -16.51 4.49 -47.24 -0.21 -16.72 16 12 C -0.23 -6.28 9.81 -15.06 -0.15 -6.42 16 13 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 15 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 16 Si 0.90 22.59 29.55 -169.99 -5.02 17.57 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 C -0.19 -3.08 10.11 -26.70 -0.27 -3.35 16 21 C -0.19 -3.36 10.18 -26.69 -0.27 -3.63 16 22 N -0.24 -4.19 11.92 33.42 0.40 -3.79 16 23 N -0.38 -4.88 6.83 33.50 0.23 -4.66 16 24 H 0.44 4.05 8.96 -190.45 -1.71 2.34 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.42 8.84 7.51 -40.82 -0.31 8.53 16 32 H 0.07 1.41 8.13 -51.92 -0.42 0.99 16 33 H 0.06 1.04 7.91 -51.93 -0.41 0.63 16 34 H 0.39 9.91 8.03 -40.82 -0.33 9.59 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 36 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -32.45 339.71 -8.54 -40.99 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -6.94 Total: 16.21 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.59 Total: -1.98 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: 0.81 Total: -65.80 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.45 -8.54 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716676255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.593 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds