Wall clock time and date at job start Tue Mar 31 2020 00:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47313 * 2 1 4 4 C 1.35371 * 126.38166 * 85.00121 * 3 2 1 5 5 C 1.41508 * 105.49926 * 180.02562 * 4 3 2 6 6 C 1.47712 * 126.51468 * 179.97438 * 5 4 3 7 7 O 1.21574 * 120.00032 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99720 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99908 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47451 * 174.42330 * 9 8 6 11 11 N 1.46496 * 115.54910 * 324.37279 * 10 9 8 12 12 C 1.36939 * 119.99805 * 294.99438 * 11 10 9 13 13 H 1.08001 * 120.00336 * 356.89341 * 12 11 10 14 14 C 1.38814 * 120.00249 * 176.89294 * 12 11 10 15 15 N 1.31621 * 119.99789 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00267 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47153 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47173 * 119.99616 * 16 14 12 19 19 H 1.48490 * 109.47500 * 239.99860 * 16 14 12 20 20 C 1.52996 * 117.49739 * 110.03425 * 10 9 8 21 21 C 1.52998 * 117.50278 * 178.69641 * 10 9 8 22 22 N 1.31805 * 106.96480 * 0.24334 * 5 4 3 23 23 N 1.28470 * 110.07578 * 359.59229 * 22 5 4 24 24 H 0.96993 * 124.89100 * 180.20607 * 23 22 5 25 25 H 1.09004 * 109.46818 * 299.99663 * 1 2 3 26 26 H 1.08994 * 109.47286 * 59.99544 * 1 2 3 27 27 H 1.08999 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46818 * 240.00337 * 2 1 3 29 29 H 1.08994 * 109.47286 * 120.00455 * 2 1 3 30 30 H 1.07996 * 127.24882 * 0.02562 * 4 3 2 31 31 H 0.96997 * 120.00621 * 0.02562 * 8 6 5 32 32 H 1.09007 * 109.47052 * 54.42484 * 9 8 6 33 33 H 1.08994 * 109.47813 * 294.43033 * 9 8 6 34 34 H 0.96998 * 120.00841 * 115.27131 * 11 10 9 35 35 H 0.96997 * 120.00046 * 179.97438 * 15 14 12 36 36 H 1.08997 * 117.49987 * 215.00514 * 20 10 9 37 37 H 1.09003 * 117.50198 * 0.03216 * 20 10 9 38 38 H 1.09005 * 117.49497 * 359.97438 * 21 10 9 39 39 H 1.08996 * 117.50169 * 144.97361 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2105 2.2095 1.0857 5 6 2.6921 3.4415 0.5832 6 6 3.0409 4.6381 1.3760 7 8 2.9230 4.6212 2.5859 8 7 3.4907 5.7482 0.7581 9 6 3.8360 6.9351 1.5443 10 6 4.4459 7.9958 0.6256 11 7 5.2816 7.4836 -0.4632 12 6 6.4513 6.8307 -0.1794 13 1 6.7830 6.7372 0.8442 14 6 7.2109 6.2890 -1.2072 15 7 6.8065 6.4024 -2.4546 16 14 8.8069 5.3989 -0.8201 17 1 9.0363 5.4094 0.6470 18 1 8.7196 3.9956 -1.2979 19 1 9.9340 6.0846 -1.5016 20 6 3.6171 9.2517 0.3491 21 6 4.8474 9.3305 1.2565 22 7 2.7648 3.3203 -0.7273 23 7 2.3881 2.1447 -1.0830 24 1 2.3601 1.8242 -1.9980 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.0243 1.9525 2.1180 31 1 3.5851 5.7616 -0.2072 32 1 4.5578 6.6633 2.3146 33 1 2.9370 7.3344 2.0136 34 1 5.0085 7.6105 -1.3852 35 1 7.3374 6.0242 -3.1729 36 1 3.6937 9.6970 -0.6429 37 1 2.6376 9.3227 0.8221 38 1 4.6766 9.4532 2.3261 39 1 5.7336 9.8274 0.8618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716676255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:57 Heat of formation + Delta-G solvation = 44.337700 kcal Electronic energy + Delta-G solvation = -21415.965804 eV Core-core repulsion = 18167.136930 eV Total energy + Delta-G solvation = -3248.828875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.67626 -40.48722 -38.90411 -35.33240 -35.06014 -34.88159 -32.87540 -31.61553 -30.31947 -28.21419 -25.94090 -24.76499 -24.36837 -23.18819 -22.02636 -21.05936 -20.44505 -19.11572 -18.63151 -18.02427 -17.26853 -16.87142 -16.40068 -15.99999 -15.69908 -15.43221 -15.24946 -15.02364 -14.80389 -14.52863 -14.12836 -13.87043 -13.57917 -13.28834 -12.96641 -12.86355 -12.47981 -12.25116 -12.16642 -12.05597 -11.94711 -11.75079 -11.67582 -11.25248 -10.93602 -10.65009 -10.46275 -9.95437 -9.87014 -9.03514 -7.95282 -5.23587 0.55170 1.13279 1.41570 1.43593 1.51961 1.91659 2.31397 2.42485 2.52953 3.05869 3.40435 3.46067 3.64411 3.69668 3.89469 4.03378 4.17802 4.35241 4.42859 4.43532 4.54867 4.69339 4.77861 4.82847 4.85869 4.86225 5.03858 5.08626 5.15502 5.21469 5.32971 5.40990 5.41919 5.51179 5.58490 6.13590 6.26979 6.56004 6.91368 7.21437 7.33897 8.04817 8.29716 9.26900 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.005316 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.725825 B = 5265.664059 C = 6453.593128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.035 3.965 4 C -0.199 4.199 5 C -0.037 4.037 6 C 0.592 3.408 7 O -0.579 6.579 8 N -0.686 5.686 9 C 0.155 3.845 10 C 0.096 3.904 11 N -0.695 5.695 12 C -0.221 4.221 13 H 0.064 0.936 14 C -0.062 4.062 15 N -0.959 5.959 16 Si 0.956 3.044 17 H -0.275 1.275 18 H -0.298 1.298 19 H -0.291 1.291 20 C -0.158 4.158 21 C -0.182 4.182 22 N -0.275 5.275 23 N -0.367 5.367 24 H 0.458 0.542 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.166 0.834 31 H 0.411 0.589 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.378 0.622 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.789 -9.930 3.186 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.092 4.092 4 C -0.227 4.227 5 C -0.196 4.196 6 C 0.377 3.623 7 O -0.459 6.459 8 N -0.336 5.336 9 C 0.030 3.970 10 C 0.003 3.997 11 N -0.334 5.334 12 C -0.352 4.352 13 H 0.082 0.918 14 C -0.254 4.254 15 N -0.610 5.610 16 Si 0.787 3.213 17 H -0.199 1.199 18 H -0.225 1.225 19 H -0.218 1.218 20 C -0.195 4.195 21 C -0.222 4.222 22 N -0.112 5.112 23 N -0.083 5.083 24 H 0.306 0.694 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.184 0.816 31 H 0.247 0.753 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.212 0.788 35 H 0.059 0.941 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.401 -9.369 3.183 16.658 hybrid contribution 1.099 -0.706 -0.583 1.431 sum -12.302 -10.075 2.600 16.113 Atomic orbital electron populations 1.21770 0.93266 1.03309 1.02091 1.20307 0.96848 0.85960 1.05764 1.21985 1.03152 0.97991 0.86048 1.21678 1.08153 0.91988 1.00911 1.21914 1.09836 0.97387 0.90501 1.17239 0.76963 0.81903 0.86180 1.90691 1.57151 1.83823 1.14195 1.45716 1.63307 1.12437 1.12100 1.21117 0.98608 0.84562 0.92757 1.20445 0.98146 0.87207 0.93860 1.41788 1.21874 1.66602 1.03090 1.19312 0.97670 1.25819 0.92427 0.91810 1.25294 1.01941 1.02844 0.95365 1.69776 1.40493 1.52043 0.98642 0.85323 0.80772 0.77834 0.77380 1.19950 1.22517 1.21802 1.23281 0.96122 0.99001 1.01138 1.23370 0.98594 1.01047 0.99234 1.73645 1.18241 1.04264 1.15009 1.43442 1.46211 1.07665 1.10996 0.69430 0.92897 0.92920 0.89711 0.88258 0.87852 0.81619 0.75261 0.93310 0.89945 0.78822 0.94119 0.89197 0.86276 0.87305 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.05 -0.60 6.49 29.85 0.19 -0.40 16 3 C 0.03 0.76 6.48 41.40 0.27 1.03 16 4 C -0.20 -5.84 10.73 22.41 0.24 -5.60 16 5 C -0.04 -1.35 7.13 42.46 0.30 -1.05 16 6 C 0.59 24.64 7.82 86.75 0.68 25.31 16 7 O -0.58 -25.98 16.92 -3.95 -0.07 -26.05 16 8 N -0.69 -28.25 5.39 -466.10 -2.51 -30.76 16 9 C 0.16 5.97 5.69 86.38 0.49 6.46 16 10 C 0.10 3.71 2.46 3.60 0.01 3.72 16 11 N -0.69 -33.69 4.49 -303.35 -1.36 -35.06 16 12 C -0.22 -12.06 9.81 84.03 0.82 -11.24 16 13 H 0.06 3.54 7.83 -2.91 -0.02 3.51 16 14 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 15 N -0.96 -57.14 13.06 21.65 0.28 -56.85 16 16 Si 0.96 47.02 29.55 68.60 2.03 49.05 16 17 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 19 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 20 C -0.16 -4.88 10.11 30.62 0.31 -4.57 16 21 C -0.18 -6.09 10.18 30.62 0.31 -5.78 16 22 N -0.27 -9.50 11.92 -48.17 -0.57 -10.08 16 23 N -0.37 -8.94 6.83 -47.92 -0.33 -9.27 16 24 H 0.46 7.57 8.96 -220.00 -1.97 5.60 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.41 17.91 7.51 -92.71 -0.70 17.22 16 32 H 0.05 2.03 8.13 -2.38 -0.02 2.02 16 33 H 0.08 2.75 7.91 -2.39 -0.02 2.73 16 34 H 0.38 19.67 8.03 -92.71 -0.74 18.92 16 35 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.12 2.97 8.06 -2.39 -0.02 2.96 16 38 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 39 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -71.34 339.71 -0.05 -71.39 By element: Atomic # 1 Polarization: 45.92 SS G_CDS: -2.32 Total: 43.60 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 4.81 Total: 4.03 kcal Atomic # 7 Polarization: -137.53 SS G_CDS: -4.49 Total: -142.02 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.07 Total: -26.05 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -71.34 -0.05 -71.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716676255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.723 kcal (2) G-P(sol) polarization free energy of solvation -71.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds