Wall clock time and date at job start Tue Mar 31 2020 01:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 H 1.09000 * 109.46847 * 54.99345 * 3 2 1 5 5 C 1.52992 * 109.47327 * 174.99650 * 3 2 1 6 6 N 1.46506 * 109.47247 * 174.99607 * 5 3 2 7 7 C 1.34777 * 120.00272 * 179.97438 * 6 5 3 8 8 O 1.21557 * 119.99807 * 0.02562 * 7 6 5 9 9 C 1.47825 * 119.99821 * 179.97438 * 7 6 5 10 10 C 1.39967 * 120.94395 * 353.92905 * 9 7 6 11 11 N 1.32133 * 118.92462 * 179.71859 * 10 9 7 12 12 C 1.31888 * 120.96398 * 0.56215 * 11 10 9 13 13 N 1.31854 * 122.09970 * 359.70269 * 12 11 10 14 14 C 1.32166 * 120.96237 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.53126 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.46944 * 294.99917 * 3 2 1 17 17 C 1.36938 * 120.00282 * 84.99659 * 16 3 2 18 18 H 1.07992 * 119.99833 * 359.97438 * 17 16 3 19 19 C 1.38811 * 119.99861 * 180.02562 * 17 16 3 20 20 N 1.31617 * 120.00149 * 359.72410 * 19 17 16 21 21 Si 1.86804 * 119.99911 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47012 * 269.72623 * 21 19 17 23 23 H 1.48507 * 109.46877 * 29.72035 * 21 19 17 24 24 H 1.48490 * 109.47329 * 149.72163 * 21 19 17 25 25 H 1.08997 * 109.47833 * 300.00535 * 1 2 3 26 26 H 1.09005 * 109.46860 * 60.00495 * 1 2 3 27 27 H 1.09003 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47833 * 239.99465 * 2 1 3 29 29 H 1.09005 * 109.46860 * 119.99505 * 2 1 3 30 30 H 1.09001 * 109.47565 * 294.99657 * 5 3 2 31 31 H 1.08998 * 109.47356 * 55.00298 * 5 3 2 32 32 H 0.97001 * 119.99453 * 0.02562 * 6 5 3 33 33 H 1.07998 * 120.53402 * 359.96541 * 10 9 7 34 34 H 1.08001 * 118.95141 * 179.73072 * 12 11 10 35 35 H 1.09002 * 109.46937 * 263.64644 * 15 14 13 36 36 H 1.08992 * 109.47388 * 23.64931 * 15 14 13 37 37 H 1.09002 * 109.46926 * 143.65700 * 15 14 13 38 38 H 0.97003 * 119.99786 * 265.00042 * 16 3 2 39 39 H 0.97007 * 119.99933 * 0.27033 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0630 0.0869 8 8 6.1652 2.1463 0.2589 9 6 5.8884 4.4478 -0.0347 10 6 5.0254 5.5010 -0.3589 11 7 5.5164 6.7242 -0.4517 12 6 6.7995 6.9570 -0.2546 13 7 7.6481 5.9941 0.0473 14 6 7.2418 4.7420 0.1653 15 6 8.2200 3.6490 0.5113 16 7 1.6525 2.0974 -1.2518 17 6 0.4157 2.6735 -1.3689 18 1 -0.2742 2.6445 -0.5386 19 6 0.0484 3.2936 -2.5553 20 7 0.8909 3.3326 -3.5657 21 14 -1.6385 4.0800 -2.7148 22 1 -2.6041 3.0790 -3.2354 23 1 -2.0902 4.5571 -1.3830 24 1 -1.5625 5.2288 -3.6526 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.8498 1.0377 1.0962 31 1 3.9954 0.8311 -0.6658 32 1 3.4410 3.5483 -0.1309 33 1 3.9744 5.3173 -0.5266 34 1 7.1668 7.9688 -0.3429 35 1 8.5527 3.1566 -0.4025 36 1 9.0791 4.0797 1.0255 37 1 7.7355 2.9201 1.1610 38 1 2.2720 2.1230 -1.9978 39 1 1.7670 2.9247 -3.4827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732191108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:08 Heat of formation + Delta-G solvation = 16.213574 kcal Electronic energy + Delta-G solvation = -21617.612015 eV Core-core repulsion = 18367.563587 eV Total energy + Delta-G solvation = -3250.048428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35885 -39.29254 -36.96525 -34.75213 -33.85322 -32.90661 -32.47364 -29.78006 -28.93146 -27.60016 -25.32573 -23.68417 -23.03156 -22.52228 -20.71081 -20.13935 -17.93395 -17.80288 -17.40778 -16.86076 -15.71294 -15.51374 -15.11519 -14.73613 -14.23719 -14.04542 -13.69473 -13.62750 -13.28397 -13.18618 -13.05272 -12.80471 -12.38880 -12.07337 -11.71001 -11.69527 -11.07656 -10.83446 -10.69908 -10.62377 -10.42623 -10.16486 -9.97305 -9.76463 -9.66219 -9.41923 -9.27866 -9.02580 -8.86358 -7.18009 -6.18720 -3.21481 0.34408 0.89515 2.85007 3.20603 3.46535 3.49563 3.63823 3.68434 3.87342 3.96796 4.25762 4.57404 4.66143 4.83174 5.12390 5.24966 5.28759 5.40744 5.46895 5.58074 5.68984 5.74124 5.81929 5.82913 5.96204 5.98485 6.23259 6.24656 6.38870 6.43656 6.48412 6.67461 6.76981 6.87281 7.15238 7.60700 7.72267 7.87350 8.23060 8.64738 9.08587 9.95613 10.10049 11.28000 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.005133 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.739694 B = 5453.124784 C = 6821.492863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.167 3.833 4 H 0.056 0.944 5 C 0.114 3.886 6 N -0.705 5.705 7 C 0.565 3.435 8 O -0.538 6.538 9 C -0.244 4.244 10 C 0.192 3.808 11 N -0.525 5.525 12 C 0.314 3.686 13 N -0.530 5.530 14 C 0.231 3.769 15 C -0.110 4.110 16 N -0.733 5.733 17 C -0.331 4.331 18 H 0.069 0.931 19 C -0.041 4.041 20 N -0.940 5.940 21 Si 1.077 2.923 22 H -0.296 1.296 23 H -0.294 1.294 24 H -0.288 1.288 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.408 0.592 33 H 0.176 0.824 34 H 0.200 0.800 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.367 0.633 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.330 1.284 9.058 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.057 3.943 4 H 0.074 0.926 5 C -0.010 4.010 6 N -0.356 5.356 7 C 0.350 3.650 8 O -0.417 6.417 9 C -0.251 4.251 10 C 0.025 3.975 11 N -0.239 5.239 12 C 0.027 3.973 13 N -0.244 5.244 14 C 0.085 3.915 15 C -0.167 4.167 16 N -0.377 5.377 17 C -0.461 4.461 18 H 0.087 0.913 19 C -0.239 4.239 20 N -0.585 5.585 21 Si 0.909 3.091 22 H -0.223 1.223 23 H -0.221 1.221 24 H -0.214 1.214 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.246 0.754 33 H 0.193 0.807 34 H 0.217 0.783 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.201 0.799 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.014 2.421 8.253 12.460 hybrid contribution 0.393 -1.293 0.686 1.515 sum 9.407 1.128 8.940 13.026 Atomic orbital electron populations 1.21763 0.95516 0.99667 1.03380 1.22051 0.97188 0.98115 1.00014 1.20520 0.89615 0.92948 0.91190 0.92606 1.21766 0.95815 0.81940 1.01519 1.45912 1.06615 1.11238 1.71868 1.17730 0.82772 0.87198 0.77297 1.90709 1.55569 1.45422 1.50042 1.21668 0.96822 0.96588 1.10043 1.23662 1.00621 0.86911 0.86279 1.68491 1.16032 1.23054 1.16306 1.25228 0.85079 0.99239 0.87751 1.68410 1.39456 1.00554 1.16021 1.21983 0.91490 0.92428 0.85607 1.21075 0.96888 0.94924 1.03820 1.42483 1.16893 1.67075 1.11241 1.20020 0.92602 1.32529 1.00997 0.91344 1.25700 1.05638 1.00301 0.92278 1.70872 1.08250 1.47157 1.32250 0.83260 0.74366 0.76466 0.75056 1.22349 1.22105 1.21436 0.94064 0.89602 0.94829 0.92656 0.93726 0.91342 0.91539 0.75424 0.80676 0.78313 0.89205 0.90785 0.87522 0.79909 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.18 37.15 0.34 -2.19 16 2 C -0.13 -2.19 5.61 -26.73 -0.15 -2.34 16 3 C 0.17 2.92 2.59 -67.93 -0.18 2.74 16 4 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.11 1.77 5.23 -4.04 -0.02 1.75 16 6 N -0.71 -10.77 5.34 -61.26 -0.33 -11.10 16 7 C 0.56 8.73 7.73 -12.34 -0.10 8.64 16 8 O -0.54 -9.13 13.53 5.32 0.07 -9.06 16 9 C -0.24 -3.48 5.91 -104.69 -0.62 -4.10 16 10 C 0.19 2.69 10.80 -16.77 -0.18 2.50 16 11 N -0.52 -7.28 10.42 -14.24 -0.15 -7.43 16 12 C 0.31 3.79 12.27 -92.02 -1.13 2.66 16 13 N -0.53 -6.97 10.36 -10.47 -0.11 -7.07 16 14 C 0.23 3.16 6.87 -81.81 -0.56 2.60 16 15 C -0.11 -1.30 9.00 36.01 0.32 -0.98 16 16 N -0.73 -15.79 4.50 -53.43 -0.24 -16.03 16 17 C -0.33 -8.15 7.75 -15.06 -0.12 -8.26 16 18 H 0.07 1.68 7.32 -52.49 -0.38 1.30 16 19 C -0.04 -1.09 5.50 -17.43 -0.10 -1.18 16 20 N -0.94 -27.12 13.70 55.49 0.76 -26.36 16 21 Si 1.08 24.44 29.92 -169.99 -5.09 19.35 16 22 H -0.30 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.78 5.99 -51.93 -0.31 1.47 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.41 6.30 6.31 -40.82 -0.26 6.04 16 33 H 0.18 2.33 6.58 -52.49 -0.35 1.98 16 34 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.11 1.36 5.95 -51.93 -0.31 1.05 16 38 H 0.37 8.47 6.63 -40.82 -0.27 8.20 16 39 H 0.26 7.27 6.77 -40.82 -0.28 6.99 16 LS Contribution 324.36 15.07 4.89 4.89 Total: -1.00 -29.51 324.36 -7.85 -37.35 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -5.17 Total: 13.62 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.48 Total: 1.84 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -0.06 Total: -67.99 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.09 Total: 19.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.51 -7.85 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732191108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.565 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds