Wall clock time and date at job start Tue Mar 31 2020 01:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 H 1.09000 * 109.46847 * 54.99345 * 3 2 1 5 5 C 1.52992 * 109.47327 * 174.99650 * 3 2 1 6 6 N 1.46506 * 109.47247 * 174.99607 * 5 3 2 7 7 C 1.34777 * 120.00272 * 179.97438 * 6 5 3 8 8 O 1.21557 * 119.99807 * 0.02562 * 7 6 5 9 9 C 1.47825 * 119.99821 * 179.97438 * 7 6 5 10 10 C 1.39967 * 120.94395 * 353.92905 * 9 7 6 11 11 N 1.32133 * 118.92462 * 179.71859 * 10 9 7 12 12 C 1.31888 * 120.96398 * 0.56215 * 11 10 9 13 13 N 1.31854 * 122.09970 * 359.70269 * 12 11 10 14 14 C 1.32166 * 120.96237 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.53126 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.46944 * 294.99917 * 3 2 1 17 17 C 1.36938 * 120.00282 * 84.99659 * 16 3 2 18 18 H 1.07992 * 119.99833 * 359.97438 * 17 16 3 19 19 C 1.38811 * 119.99861 * 180.02562 * 17 16 3 20 20 N 1.31617 * 120.00149 * 359.72410 * 19 17 16 21 21 Si 1.86804 * 119.99911 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47012 * 269.72623 * 21 19 17 23 23 H 1.48507 * 109.46877 * 29.72035 * 21 19 17 24 24 H 1.48490 * 109.47329 * 149.72163 * 21 19 17 25 25 H 1.08997 * 109.47833 * 300.00535 * 1 2 3 26 26 H 1.09005 * 109.46860 * 60.00495 * 1 2 3 27 27 H 1.09003 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47833 * 239.99465 * 2 1 3 29 29 H 1.09005 * 109.46860 * 119.99505 * 2 1 3 30 30 H 1.09001 * 109.47565 * 294.99657 * 5 3 2 31 31 H 1.08998 * 109.47356 * 55.00298 * 5 3 2 32 32 H 0.97001 * 119.99453 * 0.02562 * 6 5 3 33 33 H 1.07998 * 120.53402 * 359.96541 * 10 9 7 34 34 H 1.08001 * 118.95141 * 179.73072 * 12 11 10 35 35 H 1.09002 * 109.46937 * 263.64644 * 15 14 13 36 36 H 1.08992 * 109.47388 * 23.64931 * 15 14 13 37 37 H 1.09002 * 109.46926 * 143.65700 * 15 14 13 38 38 H 0.97003 * 119.99786 * 265.00042 * 16 3 2 39 39 H 0.97007 * 119.99933 * 0.27033 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0630 0.0869 8 8 6.1652 2.1463 0.2589 9 6 5.8884 4.4478 -0.0347 10 6 5.0254 5.5010 -0.3589 11 7 5.5164 6.7242 -0.4517 12 6 6.7995 6.9570 -0.2546 13 7 7.6481 5.9941 0.0473 14 6 7.2418 4.7420 0.1653 15 6 8.2200 3.6490 0.5113 16 7 1.6525 2.0974 -1.2518 17 6 0.4157 2.6735 -1.3689 18 1 -0.2742 2.6445 -0.5386 19 6 0.0484 3.2936 -2.5553 20 7 0.8909 3.3326 -3.5657 21 14 -1.6385 4.0800 -2.7148 22 1 -2.6041 3.0790 -3.2354 23 1 -2.0902 4.5571 -1.3830 24 1 -1.5625 5.2288 -3.6526 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.8498 1.0377 1.0962 31 1 3.9954 0.8311 -0.6658 32 1 3.4410 3.5483 -0.1309 33 1 3.9744 5.3173 -0.5266 34 1 7.1668 7.9688 -0.3429 35 1 8.5527 3.1566 -0.4025 36 1 9.0791 4.0797 1.0255 37 1 7.7355 2.9201 1.1610 38 1 2.2720 2.1230 -1.9978 39 1 1.7670 2.9247 -3.4827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732191108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:06 Heat of formation + Delta-G solvation = -2.882923 kcal Electronic energy + Delta-G solvation = -21618.440101 eV Core-core repulsion = 18367.563587 eV Total energy + Delta-G solvation = -3250.876514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.42129 -40.51600 -38.45354 -35.93189 -35.18505 -34.42589 -33.68021 -31.36082 -30.15978 -28.93773 -26.46839 -25.39933 -24.31565 -23.74698 -21.97206 -21.53604 -19.48427 -19.00172 -18.81864 -17.86517 -16.95681 -16.78692 -16.52542 -16.26957 -15.57619 -15.42410 -15.29253 -14.82012 -14.67200 -14.26896 -14.19114 -13.97766 -13.64236 -13.30152 -13.17793 -12.77948 -12.73670 -12.57116 -12.08131 -11.96028 -11.81613 -11.72041 -11.53100 -11.17842 -10.95881 -10.85036 -10.79310 -10.46590 -10.11251 -9.06128 -8.25072 -5.21106 -0.70784 -0.16879 1.63253 1.67764 1.71016 1.84462 1.99981 2.62527 2.75782 2.90533 2.99453 3.21488 3.49531 3.54867 3.69887 3.77054 3.86675 4.22323 4.29073 4.38327 4.41650 4.50636 4.64931 4.68154 4.76514 4.79069 4.96952 5.03772 5.07308 5.15346 5.26805 5.38908 5.49271 5.66409 5.73081 5.75539 6.36156 6.60051 6.85277 6.99654 7.16250 8.06515 8.18516 9.25344 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.005133 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.739694 B = 5453.124784 C = 6821.492863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.168 3.832 4 H 0.058 0.942 5 C 0.123 3.877 6 N -0.705 5.705 7 C 0.567 3.433 8 O -0.554 6.554 9 C -0.256 4.256 10 C 0.190 3.810 11 N -0.541 5.541 12 C 0.318 3.682 13 N -0.534 5.534 14 C 0.227 3.773 15 C -0.105 4.105 16 N -0.739 5.739 17 C -0.303 4.303 18 H 0.072 0.928 19 C -0.102 4.102 20 N -0.981 5.981 21 Si 1.117 2.883 22 H -0.293 1.293 23 H -0.272 1.272 24 H -0.302 1.302 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.408 0.592 33 H 0.176 0.824 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.358 0.642 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.669 1.347 10.671 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.060 3.940 4 H 0.076 0.924 5 C -0.001 4.001 6 N -0.356 5.356 7 C 0.353 3.647 8 O -0.435 6.435 9 C -0.264 4.264 10 C 0.024 3.976 11 N -0.256 5.256 12 C 0.032 3.968 13 N -0.249 5.249 14 C 0.080 3.920 15 C -0.161 4.161 16 N -0.382 5.382 17 C -0.434 4.434 18 H 0.090 0.910 19 C -0.293 4.293 20 N -0.630 5.630 21 Si 0.945 3.055 22 H -0.221 1.221 23 H -0.197 1.197 24 H -0.229 1.229 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.245 0.755 33 H 0.193 0.807 34 H 0.254 0.746 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.191 0.809 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.355 2.460 9.926 13.860 hybrid contribution 0.339 -1.343 0.279 1.413 sum 9.694 1.117 10.205 14.120 Atomic orbital electron populations 1.21689 0.96029 1.00532 1.01749 1.21978 0.96620 0.97204 1.01149 1.20674 0.90944 0.93276 0.89153 0.92412 1.21663 0.94182 0.82094 1.02206 1.45888 1.06700 1.11093 1.71892 1.17860 0.82511 0.87567 0.76738 1.90700 1.55846 1.46040 1.50923 1.21573 0.97354 0.95916 1.11529 1.23703 1.00733 0.87173 0.86037 1.68553 1.17065 1.22831 1.17107 1.26017 0.84377 1.00565 0.85838 1.68514 1.39546 1.00449 1.16416 1.22297 0.91506 0.93166 0.84999 1.21049 0.97013 0.94296 1.03787 1.42600 1.15833 1.67307 1.12431 1.20239 0.93205 1.29793 1.00209 0.91017 1.26743 1.07865 1.02028 0.92685 1.70973 1.08506 1.49843 1.33642 0.82716 0.71728 0.75362 0.75707 1.22100 1.19702 1.22862 0.93275 0.93414 0.92869 0.93628 0.90406 0.89379 0.92428 0.75541 0.80714 0.74570 0.89078 0.88945 0.88445 0.80943 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.18 71.98 0.66 -4.01 16 2 C -0.13 -3.97 5.61 30.59 0.17 -3.80 16 3 C 0.17 5.62 2.59 44.99 0.12 5.74 16 4 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 5 C 0.12 3.65 5.23 86.38 0.45 4.10 16 6 N -0.71 -21.15 5.34 -465.99 -2.49 -23.64 16 7 C 0.57 17.25 7.73 86.78 0.67 17.92 16 8 O -0.55 -18.44 13.53 -3.90 -0.05 -18.49 16 9 C -0.26 -7.19 5.91 -19.91 -0.12 -7.30 16 10 C 0.19 5.26 10.80 85.07 0.92 6.17 16 11 N -0.54 -14.42 10.42 -198.97 -2.07 -16.50 16 12 C 0.32 7.07 12.27 180.84 2.22 9.29 16 13 N -0.53 -13.13 10.36 -187.05 -1.94 -15.07 16 14 C 0.23 5.95 6.87 42.92 0.29 6.24 16 15 C -0.10 -2.35 9.00 71.24 0.64 -1.71 16 16 N -0.74 -31.75 4.50 -322.95 -1.45 -33.20 16 17 C -0.30 -14.83 7.75 84.03 0.65 -14.18 16 18 H 0.07 3.44 7.32 -2.91 -0.02 3.42 16 19 C -0.10 -5.43 5.50 84.86 0.47 -4.96 16 20 N -0.98 -57.83 13.70 21.65 0.30 -57.53 16 21 Si 1.12 49.48 29.92 68.60 2.05 51.53 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.92 5.99 -2.38 -0.01 1.91 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.41 12.50 6.31 -92.71 -0.59 11.91 16 33 H 0.18 4.70 6.58 -2.91 -0.02 4.68 16 34 H 0.24 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 2.40 5.95 -2.39 -0.01 2.39 16 38 H 0.36 16.82 6.63 -92.71 -0.61 16.20 16 39 H 0.24 14.33 6.77 -92.70 -0.63 13.70 16 Total: -1.00 -62.89 324.36 1.51 -61.38 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: 0.03 Total: 38.02 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 7.15 Total: 13.50 kcal Atomic # 7 Polarization: -138.29 SS G_CDS: -7.66 Total: -145.95 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -62.89 1.51 -61.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732191108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.502 kcal (2) G-P(sol) polarization free energy of solvation -62.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds