Wall clock time and date at job start Tue Mar 31 2020 01:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21516 * 120.00116 * 359.97438 * 7 6 5 9 9 C 1.48149 * 120.00137 * 179.97438 * 7 6 5 10 10 C 1.39440 * 120.10198 * 179.71846 * 9 7 6 11 11 N 1.32077 * 119.87706 * 179.73860 * 10 9 7 12 12 C 1.32137 * 120.06743 * 0.53682 * 11 10 9 13 13 C 1.50704 * 119.89761 * 179.75890 * 12 11 10 14 14 C 1.38731 * 120.19871 * 359.73748 * 12 11 10 15 15 N 1.31795 * 120.12241 * 359.97438 * 14 12 11 16 16 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 17 17 C 1.36943 * 119.99752 * 84.72207 * 16 3 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 3 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 3 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 27 27 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 28 28 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 29 29 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 30 30 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 31 31 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 32 32 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 33 33 H 1.08004 * 120.05588 * 0.02562 * 10 9 7 34 34 H 1.09003 * 109.47077 * 269.97954 * 13 12 11 35 35 H 1.08993 * 109.47434 * 29.97905 * 13 12 11 36 36 H 1.08997 * 109.46693 * 149.98509 * 13 12 11 37 37 H 1.07994 * 119.93545 * 179.97438 * 14 12 11 38 38 H 0.97001 * 120.00384 * 265.00562 * 16 3 2 39 39 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1650 2.1465 0.2578 9 6 5.8896 4.4507 -0.0357 10 6 7.2572 4.7084 0.0525 11 7 7.7020 5.9468 -0.0618 12 6 6.8519 6.9410 -0.2487 13 6 7.3633 8.3532 -0.3731 14 6 5.4902 6.6887 -0.3312 15 7 5.0384 5.4552 -0.2239 16 7 1.6525 2.0975 -1.2518 17 6 0.4135 2.6685 -1.3707 18 1 -0.2763 2.6399 -0.5402 19 6 0.0441 3.2841 -2.5588 20 7 -1.1464 3.8334 -2.6730 21 14 1.2369 3.3329 -3.9956 22 1 1.0378 2.1315 -4.8454 23 1 0.9912 4.5556 -4.8016 24 1 2.6302 3.3505 -3.4820 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8498 1.0377 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4410 3.5482 -0.1315 33 1 7.9517 3.8963 0.2093 34 1 7.4027 8.8136 0.6141 35 1 8.3624 8.3408 -0.8084 36 1 6.6943 8.9265 -1.0149 37 1 4.7992 7.5045 -0.4836 38 1 2.2719 2.1231 -1.9978 39 1 -1.4044 4.2640 -3.5031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753463578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:00 Heat of formation + Delta-G solvation = 16.251843 kcal Electronic energy + Delta-G solvation = -21369.157435 eV Core-core repulsion = 18119.110666 eV Total energy + Delta-G solvation = -3250.046769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.43004 -39.28256 -36.90493 -34.90425 -33.77946 -33.04813 -32.33661 -30.28480 -29.17515 -27.78106 -24.80857 -24.26337 -23.16181 -22.32909 -20.59519 -20.13605 -18.37080 -17.91803 -17.26911 -16.14222 -15.78282 -15.59362 -15.32393 -15.03176 -14.49936 -14.13095 -13.80309 -13.22326 -13.17677 -13.01283 -12.85696 -12.75669 -12.73384 -12.45395 -11.84023 -11.58842 -11.37160 -11.17332 -10.99009 -10.75173 -10.42156 -10.34622 -10.24648 -10.00962 -9.49401 -9.45288 -9.27191 -8.98351 -8.82414 -7.34938 -5.81646 -3.17457 0.21276 0.86220 2.69000 3.14515 3.34294 3.38384 3.42956 3.63939 3.79132 3.90781 4.19722 4.55031 4.58769 4.81115 4.96640 5.17974 5.18882 5.24504 5.26808 5.36255 5.44422 5.60275 5.74735 5.86642 5.88862 5.99576 6.08969 6.25851 6.43993 6.50389 6.57066 6.71012 6.92130 6.94919 7.29024 7.41413 7.74971 7.93695 8.26907 8.36455 9.14313 9.86996 10.05918 11.36013 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.005244 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.210816 B = 5337.784377 C = 6565.555809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.109 3.891 6 N -0.691 5.691 7 C 0.570 3.430 8 O -0.542 6.542 9 C 0.025 3.975 10 C 0.112 3.888 11 N -0.444 5.444 12 C 0.095 3.905 13 C -0.103 4.103 14 C 0.054 3.946 15 N -0.401 5.401 16 N -0.746 5.746 17 C -0.241 4.241 18 H 0.095 0.905 19 C 0.009 3.991 20 N -0.931 5.931 21 Si 0.879 3.121 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.278 1.278 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.421 0.579 33 H 0.183 0.817 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.178 0.822 38 H 0.362 0.638 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.537 4.586 6.217 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.016 4.016 6 N -0.342 5.342 7 C 0.353 3.647 8 O -0.420 6.420 9 C -0.116 4.116 10 C -0.048 4.048 11 N -0.160 5.160 12 C -0.046 4.046 13 C -0.161 4.161 14 C -0.109 4.109 15 N -0.117 5.117 16 N -0.390 5.390 17 C -0.370 4.370 18 H 0.113 0.887 19 C -0.187 4.187 20 N -0.578 5.578 21 Si 0.710 3.290 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.204 1.204 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.259 0.741 33 H 0.199 0.801 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.195 0.805 38 H 0.195 0.805 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.801 3.966 6.382 16.599 hybrid contribution 0.374 0.396 -1.285 1.396 sum 15.175 4.362 5.097 16.592 Atomic orbital electron populations 1.21785 0.95155 0.99731 1.03835 1.22035 0.97411 0.97709 1.00149 1.20553 0.89596 0.93115 0.90911 0.91851 1.21853 0.95870 0.82069 1.01777 1.45915 1.06826 1.11460 1.70029 1.17635 0.83183 0.86124 0.77791 1.90769 1.56318 1.44217 1.50665 1.22271 0.92549 0.94790 1.02018 1.23794 0.94207 0.94766 0.92034 1.68460 1.37916 0.99482 1.10102 1.22668 0.91583 0.97063 0.93325 1.20751 1.02863 0.88899 1.03587 1.23750 0.94821 0.94826 0.97552 1.68428 1.38004 0.99792 1.05515 1.42831 1.16714 1.67787 1.11669 1.19046 0.90333 1.27927 0.99738 0.88702 1.24625 0.96283 1.00310 0.97471 1.69686 1.19151 1.42365 1.26610 0.86641 0.81221 0.77278 0.83890 1.21222 1.21879 1.20418 0.94836 0.93858 0.89303 0.92614 0.93491 0.90983 0.91462 0.74073 0.80054 0.89551 0.89923 0.89762 0.80547 0.80529 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.17 37.15 0.34 -2.29 16 2 C -0.13 -2.17 5.61 -26.74 -0.15 -2.32 16 3 C 0.17 2.98 2.59 -67.93 -0.18 2.81 16 4 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 5 C 0.11 1.74 5.23 -4.04 -0.02 1.72 16 6 N -0.69 -11.59 5.38 -61.15 -0.33 -11.92 16 7 C 0.57 9.47 7.81 -12.19 -0.10 9.37 16 8 O -0.54 -9.79 16.35 5.35 0.09 -9.70 16 9 C 0.02 0.37 6.75 -82.84 -0.56 -0.19 16 10 C 0.11 1.48 10.77 -17.00 -0.18 1.30 16 11 N -0.44 -5.51 10.41 -8.94 -0.09 -5.60 16 12 C 0.10 1.00 6.79 -82.28 -0.56 0.44 16 13 C -0.10 -0.66 10.19 36.01 0.37 -0.29 16 14 C 0.05 0.61 10.88 -17.38 -0.19 0.42 16 15 N -0.40 -5.89 9.71 -9.62 -0.09 -5.99 16 16 N -0.75 -16.21 4.31 -53.43 -0.23 -16.44 16 17 C -0.24 -6.23 8.22 -15.06 -0.12 -6.35 16 18 H 0.10 2.63 7.54 -52.49 -0.40 2.23 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -28.02 13.97 55.49 0.78 -27.24 16 21 Si 0.88 21.63 27.74 -169.99 -4.71 16.91 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 1.91 5.97 -51.93 -0.31 1.60 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.42 7.47 7.49 -40.82 -0.31 7.16 16 33 H 0.18 2.14 7.65 -52.48 -0.40 1.74 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -31.47 330.12 -6.53 -38.00 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.46 Total: 12.25 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.45 Total: 4.76 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: 0.03 Total: -67.19 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.47 -6.53 -38.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753463578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.250 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds