Wall clock time and date at job start Tue Mar 31 2020 01:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21516 * 120.00116 * 359.97438 * 7 6 5 9 9 C 1.48149 * 120.00137 * 179.97438 * 7 6 5 10 10 C 1.39440 * 120.10198 * 179.71846 * 9 7 6 11 11 N 1.32077 * 119.87706 * 179.73860 * 10 9 7 12 12 C 1.32137 * 120.06743 * 0.53682 * 11 10 9 13 13 C 1.50704 * 119.89761 * 179.75890 * 12 11 10 14 14 C 1.38731 * 120.19871 * 359.73748 * 12 11 10 15 15 N 1.31795 * 120.12241 * 359.97438 * 14 12 11 16 16 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 17 17 C 1.36943 * 119.99752 * 84.72207 * 16 3 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 3 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 3 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 27 27 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 28 28 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 29 29 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 30 30 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 31 31 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 32 32 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 33 33 H 1.08004 * 120.05588 * 0.02562 * 10 9 7 34 34 H 1.09003 * 109.47077 * 269.97954 * 13 12 11 35 35 H 1.08993 * 109.47434 * 29.97905 * 13 12 11 36 36 H 1.08997 * 109.46693 * 149.98509 * 13 12 11 37 37 H 1.07994 * 119.93545 * 179.97438 * 14 12 11 38 38 H 0.97001 * 120.00384 * 265.00562 * 16 3 2 39 39 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1650 2.1465 0.2578 9 6 5.8896 4.4507 -0.0357 10 6 7.2572 4.7084 0.0525 11 7 7.7020 5.9468 -0.0618 12 6 6.8519 6.9410 -0.2487 13 6 7.3633 8.3532 -0.3731 14 6 5.4902 6.6887 -0.3312 15 7 5.0384 5.4552 -0.2239 16 7 1.6525 2.0975 -1.2518 17 6 0.4135 2.6685 -1.3707 18 1 -0.2763 2.6399 -0.5402 19 6 0.0441 3.2841 -2.5588 20 7 -1.1464 3.8334 -2.6730 21 14 1.2369 3.3329 -3.9956 22 1 1.0378 2.1315 -4.8454 23 1 0.9912 4.5556 -4.8016 24 1 2.6302 3.3505 -3.4820 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8498 1.0377 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4410 3.5482 -0.1315 33 1 7.9517 3.8963 0.2093 34 1 7.4027 8.8136 0.6141 35 1 8.3624 8.3408 -0.8084 36 1 6.6943 8.9265 -1.0149 37 1 4.7992 7.5045 -0.4836 38 1 2.2719 2.1231 -1.9978 39 1 -1.4044 4.2640 -3.5031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753463578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:58 Heat of formation + Delta-G solvation = -7.312032 kcal Electronic energy + Delta-G solvation = -21370.179241 eV Core-core repulsion = 18119.110666 eV Total energy + Delta-G solvation = -3251.068575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.40531 -40.53627 -38.43665 -35.92309 -35.21464 -34.13869 -33.90334 -32.08122 -30.29618 -28.97115 -25.83369 -25.53327 -24.65391 -23.68052 -21.87430 -21.60447 -19.88636 -19.12826 -18.69622 -17.18510 -17.05222 -16.82315 -16.61103 -16.19770 -15.93581 -15.57428 -15.10920 -14.71462 -14.62454 -14.42924 -14.16045 -13.76225 -13.64153 -13.25628 -13.12499 -12.91924 -12.89348 -12.78782 -12.34332 -12.31398 -12.14071 -11.92330 -11.61875 -11.53260 -11.40129 -10.95517 -10.41690 -10.24715 -10.08391 -9.29615 -7.95811 -5.27299 -0.75947 -0.08366 1.37982 1.38987 1.44992 1.54698 1.96498 2.50549 2.62138 2.88037 2.98601 3.27867 3.36541 3.56554 3.71995 3.85582 3.91291 4.04714 4.30594 4.42355 4.44160 4.55122 4.68861 4.75694 4.81240 4.81995 5.01298 5.06268 5.10148 5.19449 5.31573 5.36549 5.51948 5.73884 5.86840 5.99948 6.26788 6.33505 6.58852 6.97927 7.12646 7.87384 8.05405 9.25361 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.005244 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.210816 B = 5337.784377 C = 6565.555809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.167 3.833 4 H 0.059 0.941 5 C 0.116 3.884 6 N -0.697 5.697 7 C 0.571 3.429 8 O -0.562 6.562 9 C -0.003 4.003 10 C 0.113 3.887 11 N -0.458 5.458 12 C 0.108 3.892 13 C -0.102 4.102 14 C 0.050 3.950 15 N -0.428 5.428 16 N -0.747 5.747 17 C -0.204 4.204 18 H 0.070 0.930 19 C -0.056 4.056 20 N -0.981 5.981 21 Si 0.940 3.060 22 H -0.288 1.288 23 H -0.301 1.301 24 H -0.262 1.262 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.416 0.584 33 H 0.189 0.811 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.208 0.792 38 H 0.361 0.639 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.579 5.039 6.685 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.059 3.941 4 H 0.077 0.923 5 C -0.008 4.008 6 N -0.347 5.347 7 C 0.355 3.645 8 O -0.441 6.441 9 C -0.142 4.142 10 C -0.046 4.046 11 N -0.173 5.173 12 C -0.034 4.034 13 C -0.159 4.159 14 C -0.114 4.114 15 N -0.145 5.145 16 N -0.391 5.391 17 C -0.335 4.335 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.633 5.633 21 Si 0.770 3.230 22 H -0.214 1.214 23 H -0.229 1.229 24 H -0.187 1.187 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.253 0.747 33 H 0.205 0.795 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.225 0.775 38 H 0.194 0.806 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.899 4.358 6.888 18.762 hybrid contribution -0.238 0.322 -1.305 1.364 sum 16.661 4.679 5.584 18.184 Atomic orbital electron populations 1.21698 0.96352 1.00493 1.01608 1.21952 0.96145 0.96646 1.01943 1.20718 0.91011 0.93616 0.88731 0.92344 1.21802 0.94071 0.82061 1.02887 1.45947 1.06968 1.11414 1.70331 1.17870 0.82791 0.86847 0.76987 1.90742 1.56603 1.45106 1.51687 1.22021 0.93211 0.94123 1.04835 1.23879 0.93646 0.95516 0.91514 1.68570 1.38351 0.99509 1.10896 1.23376 0.91228 0.98407 0.90432 1.20939 1.03414 0.86347 1.05191 1.24354 0.95994 0.94439 0.96603 1.68357 1.38800 1.00949 1.06398 1.42829 1.15151 1.67864 1.13206 1.18969 0.90942 1.25320 0.98249 0.91183 1.25227 0.97777 1.01592 1.00174 1.69839 1.21378 1.44934 1.27101 0.85641 0.80061 0.76483 0.80842 1.21442 1.22857 1.18723 0.92655 0.93928 0.93555 0.92458 0.89971 0.88986 0.91427 0.74715 0.79452 0.87680 0.89632 0.87308 0.77518 0.80566 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 9.17 71.98 0.66 -4.32 16 2 C -0.13 -3.87 5.61 30.59 0.17 -3.70 16 3 C 0.17 5.71 2.59 44.99 0.12 5.82 16 4 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 5 C 0.12 3.50 5.23 86.38 0.45 3.95 16 6 N -0.70 -22.74 5.38 -465.67 -2.51 -25.24 16 7 C 0.57 18.62 7.81 86.88 0.68 19.30 16 8 O -0.56 -19.91 16.35 -3.77 -0.06 -19.97 16 9 C 0.00 -0.08 6.75 41.89 0.28 0.20 16 10 C 0.11 2.90 10.77 84.95 0.92 3.82 16 11 N -0.46 -10.58 10.41 -182.21 -1.90 -12.48 16 12 C 0.11 1.99 6.79 42.63 0.29 2.28 16 13 C -0.10 -0.93 10.19 71.24 0.73 -0.20 16 14 C 0.05 1.04 10.88 84.82 0.92 1.96 16 15 N -0.43 -12.14 9.71 -184.34 -1.79 -13.94 16 16 N -0.75 -31.95 4.31 -322.94 -1.39 -33.34 16 17 C -0.20 -10.67 8.22 84.03 0.69 -9.97 16 18 H 0.07 3.99 7.54 -2.91 -0.02 3.97 16 19 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 20 N -0.98 -60.79 13.97 21.65 0.30 -60.48 16 21 Si 0.94 45.19 27.74 68.60 1.90 47.09 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 24 H -0.26 -11.72 6.52 99.48 0.65 -11.07 16 25 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.05 1.99 5.97 -2.39 -0.01 1.98 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.42 14.54 7.49 -92.71 -0.69 13.84 16 33 H 0.19 4.35 7.65 -2.91 -0.02 4.32 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 0.52 8.08 -2.39 -0.02 0.50 16 37 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.36 15.64 5.66 -92.71 -0.52 15.12 16 39 H 0.25 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -69.29 330.12 0.73 -68.57 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.20 Total: 33.37 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.37 Total: 16.43 kcal Atomic # 7 Polarization: -138.20 SS G_CDS: -7.28 Total: -145.48 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -69.29 0.73 -68.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753463578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.254 kcal (2) G-P(sol) polarization free energy of solvation -69.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds