Wall clock time and date at job start Tue Mar 31 2020 01:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21520 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.48150 * 119.99989 * 180.02562 * 7 6 5 10 10 C 1.39438 * 120.09770 * 179.72231 * 9 7 6 11 11 N 1.32086 * 119.87359 * 179.73248 * 10 9 7 12 12 C 1.32132 * 120.06900 * 0.55044 * 11 10 9 13 13 C 1.50706 * 119.90359 * 179.75168 * 12 11 10 14 14 C 1.38728 * 120.19587 * 359.72296 * 12 11 10 15 15 N 1.31801 * 120.12901 * 359.97438 * 14 12 11 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 26 26 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 27 27 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08003 * 120.06253 * 0.02562 * 10 9 7 34 34 H 1.08992 * 109.46662 * 269.97643 * 13 12 11 35 35 H 1.09002 * 109.46914 * 29.97456 * 13 12 11 36 36 H 1.08998 * 109.47053 * 149.97620 * 13 12 11 37 37 H 1.08004 * 119.93663 * 180.02562 * 14 12 11 38 38 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1648 2.1467 -0.2596 9 6 5.8895 4.4509 0.0347 10 6 7.2579 4.7073 -0.0429 11 7 7.7019 5.9470 0.0608 12 6 6.8519 6.9411 0.2487 13 6 7.3631 8.3534 0.3721 14 6 5.4904 6.6886 0.3320 15 7 5.0383 5.4553 0.2236 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.7858 4.6654 4.0714 23 1 -1.7857 5.1494 1.6951 24 1 -2.6865 3.0484 2.5046 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 7.9530 3.8943 -0.1922 34 1 7.5707 8.5744 1.4190 35 1 8.2781 8.4608 -0.2104 36 1 6.6100 9.0464 -0.0031 37 1 4.7993 7.5044 0.4851 38 1 2.2720 2.1231 1.9978 39 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753463579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:04 Heat of formation + Delta-G solvation = 12.892686 kcal Electronic energy + Delta-G solvation = -21320.651835 eV Core-core repulsion = 18070.459402 eV Total energy + Delta-G solvation = -3250.192433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37663 -39.22317 -36.85548 -34.85259 -33.81191 -32.99854 -32.57260 -29.71568 -28.91905 -27.50013 -24.75183 -24.17901 -23.27217 -22.43710 -20.56095 -20.11481 -18.18414 -17.76199 -17.37231 -16.10426 -15.66148 -15.54486 -15.23127 -14.98190 -14.46003 -14.19828 -13.63586 -13.51885 -13.19176 -13.13574 -12.89400 -12.70271 -12.69797 -12.04938 -11.78552 -11.64273 -11.31454 -11.01618 -10.80098 -10.60676 -10.37095 -10.21744 -10.11455 -9.88564 -9.40146 -9.22955 -9.19610 -8.95111 -8.76243 -7.09643 -6.11375 -3.12717 0.26625 0.91567 2.74427 3.20274 3.49524 3.52125 3.69449 3.69702 3.83891 3.96231 4.24791 4.62665 4.64493 4.85935 5.02234 5.23180 5.28763 5.30392 5.35938 5.40481 5.54112 5.64071 5.81771 5.87875 5.89613 6.02723 6.13755 6.30249 6.45233 6.50096 6.53735 6.74064 6.93484 7.00010 7.21049 7.46713 7.78452 7.80980 8.32755 8.72379 9.17140 10.04140 10.18748 11.35721 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.004937 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.136667 B = 5669.782849 C = 7163.859065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.056 0.944 5 C 0.110 3.890 6 N -0.689 5.689 7 C 0.569 3.431 8 O -0.543 6.543 9 C 0.026 3.974 10 C 0.111 3.889 11 N -0.445 5.445 12 C 0.095 3.905 13 C -0.103 4.103 14 C 0.054 3.946 15 N -0.399 5.399 16 N -0.732 5.732 17 C -0.327 4.327 18 H 0.067 0.933 19 C -0.042 4.042 20 N -0.941 5.941 21 Si 1.076 2.924 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.296 1.296 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.421 0.579 33 H 0.182 0.818 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.177 0.823 38 H 0.368 0.632 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 5.813 -8.363 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.014 4.014 6 N -0.339 5.339 7 C 0.353 3.647 8 O -0.421 6.421 9 C -0.115 4.115 10 C -0.049 4.049 11 N -0.160 5.160 12 C -0.047 4.047 13 C -0.161 4.161 14 C -0.109 4.109 15 N -0.116 5.116 16 N -0.375 5.375 17 C -0.458 4.458 18 H 0.085 0.915 19 C -0.240 4.240 20 N -0.587 5.587 21 Si 0.907 3.093 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.223 1.223 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.259 0.741 33 H 0.199 0.801 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.194 0.806 38 H 0.201 0.799 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.945 5.944 -7.633 13.176 hybrid contribution 0.795 -0.601 -0.721 1.230 sum 9.740 5.344 -8.355 13.900 Atomic orbital electron populations 1.21762 0.95527 0.99617 1.03400 1.22055 0.97176 0.98139 0.99990 1.20502 0.89549 0.92894 0.91222 0.92646 1.21817 0.95974 0.82127 1.01492 1.45889 1.06792 1.11381 1.69885 1.17641 0.83184 0.86130 0.77793 1.90766 1.56340 1.44255 1.50778 1.22258 0.92524 0.94774 1.01949 1.23787 0.94226 0.94741 0.92101 1.68454 1.37898 0.99461 1.10168 1.22657 0.91579 0.97069 0.93384 1.20747 1.02667 0.88844 1.03804 1.23740 0.94816 0.94850 0.97505 1.68435 1.38024 0.99755 1.05383 1.42450 1.16858 1.67029 1.11203 1.19980 0.92500 1.32353 1.00974 0.91460 1.25687 1.05666 1.00349 0.92309 1.70879 1.08404 1.47423 1.31945 0.83296 0.74355 0.75890 0.75758 1.21175 1.22313 1.22304 0.89579 0.94081 0.94854 0.93728 0.92655 0.91528 0.91326 0.74090 0.80089 0.89518 0.89967 0.89817 0.80614 0.79890 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.15 0.34 -2.30 16 2 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 3 C 0.17 3.17 2.59 -67.93 -0.18 3.00 16 4 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 5 C 0.11 1.89 5.23 -4.04 -0.02 1.87 16 6 N -0.69 -12.16 5.38 -61.15 -0.33 -12.49 16 7 C 0.57 9.93 7.81 -12.19 -0.10 9.83 16 8 O -0.54 -10.27 16.35 5.35 0.09 -10.19 16 9 C 0.03 0.40 6.75 -82.84 -0.56 -0.16 16 10 C 0.11 1.54 10.77 -17.00 -0.18 1.36 16 11 N -0.44 -5.75 10.41 -8.94 -0.09 -5.84 16 12 C 0.09 1.04 6.79 -82.28 -0.56 0.48 16 13 C -0.10 -0.70 10.19 36.01 0.37 -0.34 16 14 C 0.05 0.65 10.88 -17.38 -0.19 0.46 16 15 N -0.40 -6.14 9.71 -9.61 -0.09 -6.24 16 16 N -0.73 -16.87 4.50 -53.43 -0.24 -17.11 16 17 C -0.33 -8.47 7.75 -15.06 -0.12 -8.58 16 18 H 0.07 1.72 7.32 -52.48 -0.38 1.34 16 19 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 20 N -0.94 -28.11 13.70 55.49 0.76 -27.35 16 21 Si 1.08 25.05 29.92 -169.99 -5.09 19.96 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.42 7.93 7.49 -40.82 -0.31 7.62 16 33 H 0.18 2.25 7.65 -52.48 -0.40 1.85 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.18 1.56 8.06 -52.48 -0.42 1.13 16 38 H 0.37 9.07 6.63 -40.82 -0.27 8.80 16 39 H 0.25 7.57 6.77 -40.82 -0.28 7.30 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -31.33 331.57 -6.83 -38.16 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -5.39 Total: 14.19 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.44 Total: 1.91 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: 0.00 Total: -69.03 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.09 Total: 19.96 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.33 -6.83 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753463579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.050 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds