Wall clock time and date at job start Tue Mar 31 2020 01:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21520 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.48150 * 119.99989 * 180.02562 * 7 6 5 10 10 C 1.39438 * 120.09770 * 179.72231 * 9 7 6 11 11 N 1.32086 * 119.87359 * 179.73248 * 10 9 7 12 12 C 1.32132 * 120.06900 * 0.55044 * 11 10 9 13 13 C 1.50706 * 119.90359 * 179.75168 * 12 11 10 14 14 C 1.38728 * 120.19587 * 359.72296 * 12 11 10 15 15 N 1.31801 * 120.12901 * 359.97438 * 14 12 11 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 26 26 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 27 27 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08003 * 120.06253 * 0.02562 * 10 9 7 34 34 H 1.08992 * 109.46662 * 269.97643 * 13 12 11 35 35 H 1.09002 * 109.46914 * 29.97456 * 13 12 11 36 36 H 1.08998 * 109.47053 * 149.97620 * 13 12 11 37 37 H 1.08004 * 119.93663 * 180.02562 * 14 12 11 38 38 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1648 2.1467 -0.2596 9 6 5.8895 4.4509 0.0347 10 6 7.2579 4.7073 -0.0429 11 7 7.7019 5.9470 0.0608 12 6 6.8519 6.9411 0.2487 13 6 7.3631 8.3534 0.3721 14 6 5.4904 6.6886 0.3320 15 7 5.0383 5.4553 0.2236 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.7858 4.6654 4.0714 23 1 -1.7857 5.1494 1.6951 24 1 -2.6865 3.0484 2.5046 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 7.9530 3.8943 -0.1922 34 1 7.5707 8.5744 1.4190 35 1 8.2781 8.4608 -0.2104 36 1 6.6100 9.0464 -0.0031 37 1 4.7993 7.5044 0.4851 38 1 2.2720 2.1231 1.9978 39 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753463579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:02 Heat of formation + Delta-G solvation = -10.050575 kcal Electronic energy + Delta-G solvation = -21321.646729 eV Core-core repulsion = 18070.459402 eV Total energy + Delta-G solvation = -3251.187327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.42170 -40.56359 -38.45778 -35.95240 -35.35519 -34.29040 -33.91867 -31.37605 -30.13307 -28.84470 -25.84333 -25.58295 -24.85219 -23.76539 -21.92506 -21.57929 -19.57320 -19.24194 -18.81738 -17.08724 -16.96761 -16.90826 -16.61837 -16.35064 -15.78879 -15.63169 -15.43853 -14.85139 -14.70204 -14.31647 -13.81648 -13.78034 -13.54845 -13.25396 -13.22915 -12.80347 -12.74284 -12.57301 -12.32833 -12.13657 -12.00183 -11.83481 -11.59509 -11.51481 -11.18292 -10.87956 -10.43988 -10.26182 -10.11704 -9.07210 -8.26801 -5.21698 -0.77602 -0.09630 1.51576 1.61762 1.70469 1.85854 1.93658 2.60445 2.75727 2.86193 2.97175 3.26425 3.49664 3.66419 3.73774 3.82127 3.89780 4.03200 4.25663 4.38467 4.40868 4.47381 4.61572 4.75428 4.76079 4.81677 4.99608 5.00308 5.03746 5.12980 5.29823 5.32725 5.46445 5.65092 5.72850 5.98587 6.30287 6.56952 6.57725 6.94180 7.15022 8.05016 8.17849 9.23560 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.004937 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.136667 B = 5669.782849 C = 7163.859065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.170 3.830 4 H 0.055 0.945 5 C 0.117 3.883 6 N -0.693 5.693 7 C 0.569 3.431 8 O -0.564 6.564 9 C -0.003 4.003 10 C 0.113 3.887 11 N -0.457 5.457 12 C 0.109 3.891 13 C -0.101 4.101 14 C 0.051 3.949 15 N -0.428 5.428 16 N -0.739 5.739 17 C -0.305 4.305 18 H 0.072 0.928 19 C -0.104 4.104 20 N -0.979 5.979 21 Si 1.119 2.881 22 H -0.300 1.300 23 H -0.278 1.278 24 H -0.281 1.281 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.415 0.585 33 H 0.188 0.812 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.208 0.792 38 H 0.357 0.643 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.613 6.938 -9.750 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.073 0.927 5 C -0.007 4.007 6 N -0.342 5.342 7 C 0.354 3.646 8 O -0.444 6.444 9 C -0.142 4.142 10 C -0.046 4.046 11 N -0.172 5.172 12 C -0.034 4.034 13 C -0.158 4.158 14 C -0.114 4.114 15 N -0.145 5.145 16 N -0.382 5.382 17 C -0.437 4.437 18 H 0.090 0.910 19 C -0.295 4.295 20 N -0.628 5.628 21 Si 0.946 3.054 22 H -0.227 1.227 23 H -0.204 1.204 24 H -0.208 1.208 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.252 0.748 33 H 0.205 0.795 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.130 0.870 37 H 0.225 0.775 38 H 0.189 0.811 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.946 7.013 -9.086 14.552 hybrid contribution 0.860 -0.884 -0.368 1.287 sum 9.806 6.130 -9.453 14.936 Atomic orbital electron populations 1.21683 0.95862 1.00627 1.01759 1.21973 0.96760 0.96908 1.01214 1.20656 0.90677 0.93460 0.89113 0.92705 1.21752 0.94578 0.82116 1.02220 1.45897 1.06952 1.11205 1.70179 1.17926 0.82764 0.86977 0.76942 1.90734 1.56618 1.45214 1.51858 1.21975 0.93239 0.94002 1.04945 1.23865 0.93583 0.95562 0.91571 1.68572 1.38286 0.99415 1.10962 1.23400 0.91170 0.98487 0.90324 1.20945 1.03683 0.86263 1.04946 1.24365 0.96068 0.94406 0.96522 1.68356 1.38879 1.00965 1.06283 1.42580 1.15883 1.67379 1.12332 1.20232 0.93085 1.29963 1.00379 0.91046 1.26881 1.08159 1.01892 0.92566 1.70992 1.08527 1.50001 1.33317 0.82711 0.71510 0.75887 0.75289 1.22688 1.20440 1.20784 0.93425 0.93288 0.92644 0.90302 0.93542 0.92347 0.89322 0.74820 0.79509 0.88033 0.89400 0.87005 0.77499 0.81107 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.18 71.98 0.66 -4.24 16 2 C -0.13 -4.24 5.61 30.59 0.17 -4.07 16 3 C 0.17 6.26 2.59 44.99 0.12 6.38 16 4 H 0.05 2.06 8.08 -2.38 -0.02 2.04 16 5 C 0.12 3.98 5.23 86.38 0.45 4.44 16 6 N -0.69 -24.81 5.38 -465.67 -2.51 -27.31 16 7 C 0.57 20.24 7.81 86.88 0.68 20.91 16 8 O -0.56 -21.67 16.35 -3.78 -0.06 -21.73 16 9 C 0.00 -0.09 6.75 41.89 0.28 0.20 16 10 C 0.11 3.12 10.77 84.94 0.92 4.03 16 11 N -0.46 -11.28 10.41 -182.21 -1.90 -13.18 16 12 C 0.11 2.16 6.79 42.63 0.29 2.45 16 13 C -0.10 -1.03 10.19 71.24 0.73 -0.30 16 14 C 0.05 1.13 10.88 84.81 0.92 2.06 16 15 N -0.43 -13.09 9.71 -184.33 -1.79 -14.88 16 16 N -0.74 -34.45 4.50 -322.94 -1.45 -35.91 16 17 C -0.31 -15.82 7.75 84.03 0.65 -15.17 16 18 H 0.07 3.60 7.32 -2.91 -0.02 3.58 16 19 C -0.10 -5.77 5.50 84.86 0.47 -5.31 16 20 N -0.98 -59.96 13.70 21.65 0.30 -59.66 16 21 Si 1.12 50.64 29.92 68.60 2.05 52.69 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H 0.05 2.01 5.99 -2.38 -0.01 2.00 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 2.11 8.14 -2.38 -0.02 2.10 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.41 15.95 7.49 -92.71 -0.69 15.26 16 33 H 0.19 4.72 7.65 -2.91 -0.02 4.69 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.56 8.08 -2.39 -0.02 0.54 16 37 H 0.21 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.36 18.18 6.63 -92.71 -0.61 17.56 16 39 H 0.24 14.87 6.77 -92.71 -0.63 14.24 16 Total: -1.00 -68.88 331.57 0.88 -68.00 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.09 Total: 40.60 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 6.33 Total: 11.38 kcal Atomic # 7 Polarization: -143.59 SS G_CDS: -7.35 Total: -150.94 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.06 Total: -21.73 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -68.88 0.88 -68.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753463579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.946 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds