Wall clock time and date at job start Tue Mar 31 2020 01:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53011 * 109.46759 * 2 1 4 4 N 1.46496 * 109.47084 * 299.99981 * 3 2 1 5 5 C 1.36938 * 119.99703 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00273 * 0.02562 * 5 4 3 7 7 C 1.38817 * 119.99919 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99770 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00076 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47633 * 89.99517 * 9 7 5 11 11 H 1.48501 * 109.46847 * 209.99798 * 9 7 5 12 12 H 1.48501 * 109.46764 * 329.99336 * 9 7 5 13 13 N 1.46498 * 109.47190 * 240.00833 * 2 1 3 14 14 C 1.34780 * 120.00073 * 174.06298 * 13 2 1 15 15 O 1.21599 * 119.99681 * 355.56131 * 14 13 2 16 16 C 1.47405 * 119.99661 * 175.56378 * 14 13 2 17 17 N 1.31611 * 125.86822 * 359.97390 * 16 14 13 18 18 C 1.33109 * 109.09685 * 180.02562 * 17 16 14 19 19 C 1.35560 * 108.34596 * 359.75410 * 18 17 16 20 20 N 1.35402 * 107.16429 * 0.39139 * 19 18 17 21 21 H 0.97001 * 126.43906 * 179.87636 * 20 19 18 22 22 C 1.52994 * 109.47391 * 120.00131 * 2 1 3 23 23 C 1.52996 * 117.49958 * 122.16081 * 22 2 1 24 24 C 1.52995 * 117.49901 * 53.50049 * 22 2 1 25 25 H 1.09003 * 109.46475 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46937 * 299.99417 * 1 2 3 27 27 H 1.08994 * 109.47242 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.46714 * 59.99970 * 3 2 1 29 29 H 1.08997 * 109.46853 * 180.02562 * 3 2 1 30 30 H 0.97001 * 120.00440 * 0.02562 * 4 3 2 31 31 H 0.97006 * 119.99813 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99728 * 354.04966 * 13 2 1 33 33 H 1.07999 * 125.82132 * 180.02562 * 18 17 16 34 34 H 1.08001 * 126.41590 * 180.26794 * 19 18 17 35 35 H 1.08998 * 115.54817 * 267.82976 * 22 2 1 36 36 H 1.09007 * 117.49795 * 0.02562 * 23 22 2 37 37 H 1.09002 * 117.49941 * 145.01883 * 23 22 2 38 38 H 1.09000 * 117.50027 * 214.97537 * 24 22 2 39 39 H 1.08999 * 117.49672 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8820 3.4444 -1.4125 6 1 2.5029 3.9693 -0.7016 7 6 1.4188 4.0989 -2.5457 8 7 0.6626 3.4591 -3.4123 9 14 1.8700 5.8874 -2.8413 10 1 3.1324 5.9573 -3.6200 11 1 0.7818 6.5532 -3.6015 12 1 2.0542 6.5734 -1.5371 13 7 2.0184 -0.6904 -1.1962 14 6 3.3376 -0.7100 -1.4717 15 8 4.1139 -0.0875 -0.7728 16 6 3.8392 -1.4860 -2.6202 17 7 3.1058 -2.1986 -3.4487 18 6 3.8981 -2.7596 -4.3594 19 6 5.1754 -2.3855 -4.1021 20 7 5.1459 -1.5895 -3.0072 21 1 5.9083 -1.1685 -2.5802 22 6 2.0401 -0.7212 1.2491 23 6 2.9567 -1.9288 1.0429 24 6 1.5146 -2.1336 1.5135 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4427 -0.0005 30 1 0.9937 1.6619 -1.8345 31 1 0.3392 3.9164 -4.2043 32 1 1.3923 -1.1336 -1.7899 33 1 3.5775 -3.3997 -5.1680 34 1 6.0526 -2.6708 -4.6639 35 1 2.2319 -0.0856 2.1136 36 1 3.1967 -2.2091 0.0172 37 1 3.7513 -2.0878 1.7719 38 1 1.3611 -2.4273 2.5519 39 1 0.8058 -2.5490 0.7972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753517012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:03 Heat of formation + Delta-G solvation = 75.635782 kcal Electronic energy + Delta-G solvation = -22482.267769 eV Core-core repulsion = 19234.796081 eV Total energy + Delta-G solvation = -3247.471688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.12816 -40.07571 -37.08414 -34.91604 -33.45919 -32.57878 -31.45703 -29.83957 -29.06026 -25.98637 -23.96615 -23.38176 -22.09753 -21.49470 -21.31384 -20.54956 -18.90280 -18.64700 -17.22584 -16.25605 -15.99080 -15.38218 -15.17394 -14.40921 -14.25650 -13.86453 -13.84768 -13.53740 -13.46601 -13.21488 -12.82930 -12.12439 -12.02129 -11.86809 -11.31252 -11.06254 -10.82812 -10.76084 -10.73076 -10.25032 -10.21735 -10.18749 -10.04731 -9.91131 -9.61697 -9.45691 -8.74339 -8.64561 -8.45839 -6.75395 -5.66443 -2.92513 1.53823 2.71345 2.76917 3.48985 3.53943 3.55656 3.67211 3.74058 4.03252 4.50289 4.65680 4.87943 4.99019 5.12551 5.16424 5.26161 5.38430 5.48173 5.58798 5.69365 5.74582 5.80090 5.96477 6.00908 6.09176 6.19635 6.29563 6.33121 6.41241 6.58004 6.63912 6.70918 6.93687 7.15122 7.22254 7.73211 7.80430 8.01667 8.52764 8.54829 9.63867 10.23206 10.58564 11.56643 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.006723 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.211444 B = 4163.621452 C = 5478.637595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.200 3.800 3 C 0.137 3.863 4 N -0.726 5.726 5 C -0.228 4.228 6 H 0.068 0.932 7 C -0.017 4.017 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.293 1.293 11 H -0.292 1.292 12 H -0.283 1.283 13 N -0.689 5.689 14 C 0.614 3.386 15 O -0.525 6.525 16 C 0.156 3.844 17 N -0.445 5.445 18 C -0.030 4.030 19 C -0.034 4.034 20 N -0.526 5.526 21 H 0.429 0.571 22 C -0.145 4.145 23 C -0.167 4.167 24 C -0.180 4.180 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.022 0.978 29 H 0.058 0.942 30 H 0.382 0.618 31 H 0.253 0.747 32 H 0.407 0.593 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 -15.763 3.837 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.114 3.886 3 C 0.009 3.991 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.213 4.213 8 N -0.584 5.584 9 Si 0.736 3.264 10 H -0.220 1.220 11 H -0.219 1.219 12 H -0.209 1.209 13 N -0.340 5.340 14 C 0.398 3.602 15 O -0.400 6.400 16 C -0.106 4.106 17 N -0.167 5.167 18 C -0.183 4.183 19 C -0.173 4.173 20 N -0.127 5.127 21 H 0.268 0.732 22 C -0.164 4.164 23 C -0.204 4.204 24 C -0.217 4.217 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.216 0.784 31 H 0.063 0.937 32 H 0.243 0.757 33 H 0.193 0.807 34 H 0.200 0.800 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.335 -15.199 4.479 16.719 hybrid contribution 1.123 0.920 -0.861 1.688 sum 6.457 -14.278 3.618 16.083 Atomic orbital electron populations 1.21990 0.92757 1.01576 1.04211 1.20166 0.94016 0.92695 0.81688 1.21219 0.99355 0.87500 0.91004 1.42255 1.61201 1.10456 1.23121 1.19220 1.24900 0.87605 1.04267 0.91403 1.24687 1.00912 0.98103 0.97560 1.69657 1.39737 1.35936 1.13086 0.86217 0.77317 0.85266 0.77599 1.22027 1.21886 1.20852 1.45618 1.06401 1.55231 1.26710 1.16205 0.83371 0.79423 0.81203 1.90792 1.56418 1.42843 1.49981 1.22985 0.81118 1.05324 1.01196 1.70222 1.33042 1.09437 1.04029 1.22463 0.89129 1.05210 1.01506 1.22908 1.01499 1.00147 0.92737 1.42946 1.09763 1.36936 1.23056 0.73178 1.22596 1.04011 0.90287 0.99522 1.22924 0.93023 1.02488 1.01996 1.22973 0.97366 0.99756 1.01617 0.92689 0.90827 0.90543 0.96032 0.92415 0.78366 0.93745 0.75705 0.80705 0.79962 0.87130 0.89228 0.89483 0.89228 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.18 37.16 0.30 -1.97 16 2 C 0.20 3.38 0.55 -131.81 -0.07 3.31 16 3 C 0.14 2.96 4.81 -4.04 -0.02 2.94 16 4 N -0.73 -18.84 5.18 -59.91 -0.31 -19.15 16 5 C -0.23 -6.64 9.99 -15.06 -0.15 -6.79 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 8 N -0.93 -28.91 13.06 55.49 0.72 -28.18 16 9 Si 0.90 23.25 29.55 -169.99 -5.02 18.23 16 10 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.69 -11.71 4.17 -48.67 -0.20 -11.91 16 14 C 0.61 11.14 4.85 -12.53 -0.06 11.08 16 15 O -0.53 -10.57 13.42 5.28 0.07 -10.50 16 16 C 0.16 2.56 7.95 -154.52 -1.23 1.33 16 17 N -0.44 -7.07 10.90 -11.26 -0.12 -7.19 16 18 C -0.03 -0.38 11.85 -17.96 -0.21 -0.59 16 19 C -0.03 -0.36 12.00 -16.93 -0.20 -0.56 16 20 N -0.53 -6.81 6.14 -10.78 -0.07 -6.87 16 21 H 0.43 4.74 8.96 -40.82 -0.37 4.37 16 22 C -0.14 -2.11 4.89 -90.63 -0.44 -2.56 16 23 C -0.17 -2.32 8.62 -26.70 -0.23 -2.55 16 24 C -0.18 -2.18 9.68 -26.70 -0.26 -2.44 16 25 H 0.05 0.70 6.91 -51.93 -0.36 0.34 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.36 6.86 -51.93 -0.36 1.01 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 1.38 5.63 -51.93 -0.29 1.08 16 30 H 0.38 10.31 6.35 -40.82 -0.26 10.05 16 31 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.41 6.59 8.17 -40.82 -0.33 6.26 16 33 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.11 1.59 8.06 -51.93 -0.42 1.17 16 36 H 0.09 1.36 5.21 -51.93 -0.27 1.09 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.09 7.20 -51.93 -0.37 0.72 16 LS Contribution 320.79 15.07 4.83 4.83 Total: -1.00 -34.50 320.79 -7.88 -42.38 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -5.11 Total: 17.78 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.67 Total: 0.59 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: 0.02 Total: -73.31 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.50 -7.88 -42.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753517012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.017 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds