Wall clock time and date at job start Tue Mar 31 2020 01:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53011 * 109.46759 * 2 1 4 4 N 1.46496 * 109.47084 * 299.99981 * 3 2 1 5 5 C 1.36938 * 119.99703 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00273 * 0.02562 * 5 4 3 7 7 C 1.38817 * 119.99919 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99770 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00076 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47633 * 89.99517 * 9 7 5 11 11 H 1.48501 * 109.46847 * 209.99798 * 9 7 5 12 12 H 1.48501 * 109.46764 * 329.99336 * 9 7 5 13 13 N 1.46498 * 109.47190 * 240.00833 * 2 1 3 14 14 C 1.34780 * 120.00073 * 174.06298 * 13 2 1 15 15 O 1.21599 * 119.99681 * 355.56131 * 14 13 2 16 16 C 1.47405 * 119.99661 * 175.56378 * 14 13 2 17 17 N 1.31611 * 125.86822 * 359.97390 * 16 14 13 18 18 C 1.33109 * 109.09685 * 180.02562 * 17 16 14 19 19 C 1.35560 * 108.34596 * 359.75410 * 18 17 16 20 20 N 1.35402 * 107.16429 * 0.39139 * 19 18 17 21 21 H 0.97001 * 126.43906 * 179.87636 * 20 19 18 22 22 C 1.52994 * 109.47391 * 120.00131 * 2 1 3 23 23 C 1.52996 * 117.49958 * 122.16081 * 22 2 1 24 24 C 1.52995 * 117.49901 * 53.50049 * 22 2 1 25 25 H 1.09003 * 109.46475 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46937 * 299.99417 * 1 2 3 27 27 H 1.08994 * 109.47242 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.46714 * 59.99970 * 3 2 1 29 29 H 1.08997 * 109.46853 * 180.02562 * 3 2 1 30 30 H 0.97001 * 120.00440 * 0.02562 * 4 3 2 31 31 H 0.97006 * 119.99813 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99728 * 354.04966 * 13 2 1 33 33 H 1.07999 * 125.82132 * 180.02562 * 18 17 16 34 34 H 1.08001 * 126.41590 * 180.26794 * 19 18 17 35 35 H 1.08998 * 115.54817 * 267.82976 * 22 2 1 36 36 H 1.09007 * 117.49795 * 0.02562 * 23 22 2 37 37 H 1.09002 * 117.49941 * 145.01883 * 23 22 2 38 38 H 1.09000 * 117.50027 * 214.97537 * 24 22 2 39 39 H 1.08999 * 117.49672 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8820 3.4444 -1.4125 6 1 2.5029 3.9693 -0.7016 7 6 1.4188 4.0989 -2.5457 8 7 0.6626 3.4591 -3.4123 9 14 1.8700 5.8874 -2.8413 10 1 3.1324 5.9573 -3.6200 11 1 0.7818 6.5532 -3.6015 12 1 2.0542 6.5734 -1.5371 13 7 2.0184 -0.6904 -1.1962 14 6 3.3376 -0.7100 -1.4717 15 8 4.1139 -0.0875 -0.7728 16 6 3.8392 -1.4860 -2.6202 17 7 3.1058 -2.1986 -3.4487 18 6 3.8981 -2.7596 -4.3594 19 6 5.1754 -2.3855 -4.1021 20 7 5.1459 -1.5895 -3.0072 21 1 5.9083 -1.1685 -2.5802 22 6 2.0401 -0.7212 1.2491 23 6 2.9567 -1.9288 1.0429 24 6 1.5146 -2.1336 1.5135 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4427 -0.0005 30 1 0.9937 1.6619 -1.8345 31 1 0.3392 3.9164 -4.2043 32 1 1.3923 -1.1336 -1.7899 33 1 3.5775 -3.3997 -5.1680 34 1 6.0526 -2.6708 -4.6639 35 1 2.2319 -0.0856 2.1136 36 1 3.1967 -2.2091 0.0172 37 1 3.7513 -2.0878 1.7719 38 1 1.3611 -2.4273 2.5519 39 1 0.8058 -2.5490 0.7972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753517012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:02 Heat of formation + Delta-G solvation = 50.332477 kcal Electronic energy + Delta-G solvation = -22483.365003 eV Core-core repulsion = 19234.796081 eV Total energy + Delta-G solvation = -3248.568922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.17475 -41.38827 -38.39663 -36.58561 -35.01956 -33.80023 -33.12077 -31.47106 -30.23349 -27.66368 -25.66762 -24.76778 -23.13956 -22.91494 -22.47012 -21.71304 -20.27310 -19.79145 -19.24625 -17.48102 -17.31294 -16.93491 -16.32180 -16.25786 -15.51772 -15.23906 -15.07751 -14.92228 -14.79832 -14.57968 -14.47624 -13.56697 -13.53464 -13.30402 -13.00137 -12.82029 -12.44264 -12.30006 -12.13060 -12.01790 -11.77467 -11.38690 -11.31174 -11.29055 -11.18088 -10.95413 -10.61527 -10.04067 -9.49931 -8.90790 -7.93756 -5.19942 0.41998 1.43153 1.45071 1.53802 1.62744 1.73369 2.46250 2.54448 2.59487 2.94118 3.34767 3.41773 3.63390 3.95481 3.98583 4.10079 4.17296 4.35052 4.36690 4.38359 4.48659 4.55274 4.77996 4.83915 4.92443 4.95975 5.01796 5.06045 5.19783 5.28295 5.32881 5.35793 5.47582 5.63086 5.69250 6.18712 6.28349 6.48740 6.87810 7.22325 7.35014 8.11763 8.37948 9.29385 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.006723 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.211444 B = 4163.621452 C = 5478.637595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.206 3.794 3 C 0.137 3.863 4 N -0.731 5.731 5 C -0.240 4.240 6 H 0.066 0.934 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.970 3.030 10 H -0.292 1.292 11 H -0.291 1.291 12 H -0.271 1.271 13 N -0.686 5.686 14 C 0.610 3.390 15 O -0.557 6.557 16 C 0.108 3.892 17 N -0.464 5.464 18 C -0.054 4.054 19 C -0.001 4.001 20 N -0.521 5.521 21 H 0.436 0.564 22 C -0.161 4.161 23 C -0.174 4.174 24 C -0.149 4.149 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.375 0.625 31 H 0.250 0.750 32 H 0.410 0.590 33 H 0.205 0.795 34 H 0.234 0.766 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -17.072 3.788 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.120 3.880 3 C 0.010 3.990 4 N -0.374 5.374 5 C -0.372 4.372 6 H 0.084 0.916 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.799 3.201 10 H -0.220 1.220 11 H -0.217 1.217 12 H -0.196 1.196 13 N -0.337 5.337 14 C 0.396 3.604 15 O -0.435 6.435 16 C -0.152 4.152 17 N -0.187 5.187 18 C -0.207 4.207 19 C -0.141 4.141 20 N -0.123 5.123 21 H 0.276 0.724 22 C -0.180 4.180 23 C -0.211 4.211 24 C -0.185 4.185 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.208 0.792 31 H 0.059 0.941 32 H 0.246 0.754 33 H 0.221 0.779 34 H 0.251 0.749 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.949 -16.515 4.476 18.116 hybrid contribution 1.021 1.240 -0.905 1.844 sum 6.971 -15.275 3.571 17.166 Atomic orbital electron populations 1.21933 0.91510 1.03252 1.03079 1.20034 0.94827 0.90096 0.82998 1.21275 0.98008 0.90498 0.89191 1.42347 1.61001 1.09801 1.24226 1.19562 1.24374 0.89024 1.04230 0.91629 1.25474 1.01375 1.02277 0.97521 1.69812 1.40970 1.37448 1.13446 0.85187 0.76726 0.80436 0.77723 1.21955 1.21740 1.19591 1.45609 1.06361 1.54923 1.26773 1.16503 0.83338 0.79087 0.81498 1.90753 1.57042 1.44424 1.51318 1.22627 0.82668 1.07757 1.02152 1.70143 1.34323 1.09563 1.04666 1.23138 0.89735 1.05911 1.01891 1.23779 1.02618 0.96906 0.90787 1.43061 1.08967 1.36835 1.23480 0.72379 1.22476 1.05906 0.91314 0.98332 1.22904 0.94471 1.02205 1.01529 1.23066 0.95831 0.96512 1.03138 0.89565 0.90083 0.93441 0.95982 0.94610 0.79212 0.94135 0.75427 0.77851 0.74924 0.87074 0.90696 0.88825 0.86730 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 8.18 71.98 0.59 -3.67 16 2 C 0.21 7.05 0.55 3.61 0.00 7.05 16 3 C 0.14 6.13 4.81 86.38 0.42 6.54 16 4 N -0.73 -39.15 5.18 -343.44 -1.78 -40.93 16 5 C -0.24 -14.24 9.99 84.03 0.84 -13.41 16 6 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 7 C -0.07 -4.45 5.50 84.86 0.47 -3.99 16 8 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 9 Si 0.97 48.32 29.55 68.60 2.03 50.35 16 10 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 11 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 13 N -0.69 -23.93 4.17 -426.16 -1.78 -25.71 16 14 C 0.61 22.85 4.85 86.66 0.42 23.27 16 15 O -0.56 -23.37 13.42 -4.03 -0.05 -23.43 16 16 C 0.11 3.56 7.95 136.28 1.08 4.64 16 17 N -0.46 -14.58 10.90 -189.53 -2.07 -16.65 16 18 C -0.05 -1.24 11.85 83.88 0.99 -0.24 16 19 C 0.00 -0.02 12.00 83.52 1.00 0.98 16 20 N -0.52 -12.98 6.14 -188.02 -1.16 -14.13 16 21 H 0.44 9.34 8.96 -92.71 -0.83 8.51 16 22 C -0.16 -4.59 4.89 -10.80 -0.05 -4.65 16 23 C -0.17 -4.71 8.62 30.62 0.26 -4.44 16 24 C -0.15 -3.24 9.68 30.62 0.30 -2.95 16 25 H 0.09 2.05 6.91 -2.39 -0.02 2.03 16 26 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.05 1.72 6.86 -2.39 -0.02 1.71 16 28 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.04 1.79 5.63 -2.39 -0.01 1.77 16 30 H 0.37 20.98 6.35 -92.71 -0.59 20.39 16 31 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 32 H 0.41 13.63 8.17 -92.71 -0.76 12.87 16 33 H 0.20 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.23 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.11 3.14 8.06 -2.39 -0.02 3.12 16 36 H 0.07 2.29 5.21 -2.38 -0.01 2.28 16 37 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.10 2.07 7.20 -2.39 -0.02 2.05 16 Total: -1.00 -76.70 320.79 0.73 -75.97 By element: Atomic # 1 Polarization: 47.00 SS G_CDS: -1.07 Total: 45.94 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 6.32 Total: 9.15 kcal Atomic # 7 Polarization: -151.48 SS G_CDS: -6.49 Total: -157.98 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -76.70 0.73 -75.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753517012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.299 kcal (2) G-P(sol) polarization free energy of solvation -76.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds