Wall clock time and date at job start Tue Mar 31 2020 01:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47244 * 2 1 4 4 N 1.46495 * 109.47413 * 180.02562 * 3 2 1 5 5 C 1.36932 * 120.00364 * 180.02562 * 4 3 2 6 6 H 1.08009 * 119.99768 * 359.72595 * 5 4 3 7 7 C 1.38809 * 120.00468 * 179.97438 * 5 4 3 8 8 N 1.31621 * 119.99623 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00212 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47074 * 60.00539 * 9 7 5 11 11 H 1.48503 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47270 * 300.00590 * 9 7 5 13 13 N 1.46494 * 109.47488 * 120.00055 * 2 1 3 14 14 C 1.34780 * 120.00185 * 298.25353 * 13 2 1 15 15 O 1.21607 * 119.99750 * 5.13474 * 14 13 2 16 16 C 1.47407 * 120.00216 * 185.12809 * 14 13 2 17 17 N 1.31616 * 125.86105 * 0.02562 * 16 14 13 18 18 C 1.33104 * 109.09075 * 179.97438 * 17 16 14 19 19 C 1.35563 * 108.35195 * 359.97438 * 18 17 16 20 20 N 1.35404 * 107.16076 * 359.77318 * 19 18 17 21 21 H 0.96998 * 126.44119 * 180.23883 * 20 19 18 22 22 C 1.53003 * 109.47029 * 240.00024 * 2 1 3 23 23 C 1.52997 * 117.49721 * 12.05737 * 22 2 1 24 24 C 1.52993 * 117.50088 * 303.39838 * 22 2 1 25 25 H 1.08996 * 109.47084 * 59.99997 * 1 2 3 26 26 H 1.09005 * 109.46837 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46890 * 299.99560 * 1 2 3 28 28 H 1.08995 * 109.46893 * 60.00176 * 3 2 1 29 29 H 1.09003 * 109.47135 * 300.00410 * 3 2 1 30 30 H 0.96998 * 120.00070 * 359.97438 * 4 3 2 31 31 H 0.97008 * 119.99690 * 179.97438 * 8 7 5 32 32 H 0.97006 * 120.00187 * 118.25139 * 13 2 1 33 33 H 1.08008 * 125.82104 * 180.02562 * 18 17 16 34 34 H 1.07995 * 126.41601 * 179.97438 * 19 18 17 35 35 H 1.09003 * 115.55126 * 157.71923 * 22 2 1 36 36 H 1.09004 * 117.50013 * 359.97438 * 23 22 2 37 37 H 1.09002 * 117.50238 * 145.02205 * 23 22 2 38 38 H 1.09008 * 117.49721 * 214.97997 * 24 22 2 39 39 H 1.09006 * 117.49612 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1897 2.6284 -0.0002 6 1 3.6496 3.5638 -0.0039 7 6 5.5778 2.6285 -0.0002 8 7 6.2359 1.4886 -0.0012 9 14 6.5118 4.2462 -0.0004 10 1 6.1531 5.0249 1.2121 11 1 7.9718 3.9749 -0.0011 12 1 6.1529 5.0249 -1.2129 13 7 2.0184 -0.6906 1.1961 14 6 1.7222 -0.2100 2.4199 15 8 0.9733 0.7413 2.5347 16 6 2.3058 -0.8375 3.6193 17 7 3.1259 -1.8668 3.6294 18 6 3.4455 -2.1566 4.8886 19 6 2.8069 -1.2812 5.7032 20 7 2.0932 -0.4462 4.9115 21 1 1.5344 0.2898 5.2061 22 6 2.0400 -0.7213 -1.2493 23 6 1.0241 -1.0299 -2.3509 24 6 1.5712 -2.1600 -1.4753 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9900 0.6026 -0.0006 31 1 7.2059 1.4886 -0.0016 32 1 2.5550 -1.4938 1.1073 33 1 4.1023 -2.9527 5.2068 34 1 2.8602 -1.2530 6.7815 35 1 3.0547 -0.4683 -1.5569 36 1 -0.0076 -0.7196 -2.1855 37 1 1.3706 -0.9806 -3.3832 38 1 2.2774 -2.8536 -1.9318 39 1 0.8997 -2.5928 -0.7337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753517013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:07 Heat of formation + Delta-G solvation = 68.546935 kcal Electronic energy + Delta-G solvation = -22286.221012 eV Core-core repulsion = 19038.441928 eV Total energy + Delta-G solvation = -3247.779083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.07558 -39.87228 -37.61613 -34.63600 -33.56536 -32.52999 -31.31895 -30.01646 -28.98687 -25.85068 -24.17774 -22.89633 -22.24630 -21.99588 -21.46245 -20.23188 -18.79597 -18.46094 -17.10009 -16.52592 -15.62270 -15.41310 -15.17452 -14.46458 -14.34594 -14.01470 -13.88888 -13.65609 -13.44335 -13.10950 -12.63861 -12.30100 -12.08303 -11.89411 -11.37861 -11.03277 -10.83077 -10.76209 -10.71998 -10.20509 -10.16321 -10.14662 -10.07069 -9.78739 -9.64067 -9.57762 -8.77241 -8.68420 -8.42064 -6.79005 -5.67170 -2.94125 1.55238 2.69720 2.80595 3.48882 3.52833 3.54129 3.60895 3.75379 4.16096 4.53874 4.66550 4.84923 5.01784 5.14186 5.23843 5.28512 5.40819 5.41991 5.49372 5.67213 5.73954 5.84309 6.00821 6.03666 6.09471 6.23835 6.30662 6.32465 6.47581 6.58270 6.62457 6.74557 6.89838 7.10378 7.19049 7.74423 7.78738 8.04147 8.50771 8.51604 9.62797 10.21390 10.57274 11.55470 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011227 B = 0.007320 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.296559 B = 3824.376221 C = 5393.893880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.202 3.798 3 C 0.143 3.857 4 N -0.726 5.726 5 C -0.233 4.233 6 H 0.067 0.933 7 C -0.015 4.015 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.682 5.682 14 C 0.614 3.386 15 O -0.540 6.540 16 C 0.157 3.843 17 N -0.441 5.441 18 C -0.029 4.029 19 C -0.034 4.034 20 N -0.526 5.526 21 H 0.428 0.572 22 C -0.150 4.150 23 C -0.172 4.172 24 C -0.182 4.182 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.384 0.616 31 H 0.254 0.746 32 H 0.410 0.590 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 -9.423 6.086 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.117 3.883 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.365 4.365 6 H 0.085 0.915 7 C -0.211 4.211 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.332 5.332 14 C 0.398 3.602 15 O -0.417 6.417 16 C -0.105 4.105 17 N -0.163 5.163 18 C -0.182 4.182 19 C -0.173 4.173 20 N -0.128 5.128 21 H 0.267 0.733 22 C -0.169 4.169 23 C -0.209 4.209 24 C -0.219 4.219 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.218 0.782 31 H 0.064 0.936 32 H 0.245 0.755 33 H 0.193 0.807 34 H 0.200 0.800 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.391 -8.950 5.387 15.456 hybrid contribution 0.782 1.001 1.013 1.625 sum -10.609 -7.949 6.399 14.720 Atomic orbital electron populations 1.22312 0.94587 1.01760 1.03583 1.20115 0.93166 0.93238 0.81771 1.21065 0.86646 0.91475 0.99336 1.42250 0.99083 1.06291 1.89421 1.19171 0.89007 0.86163 1.42143 0.91456 1.24691 0.96328 0.96615 1.03425 1.69653 1.06685 1.23742 1.58075 0.86301 0.78982 0.83362 0.77752 1.21517 1.21777 1.21356 1.45575 1.53738 1.29914 1.03928 1.16310 0.80233 0.82140 0.81523 1.90754 1.37054 1.27622 1.86303 1.22871 1.03568 0.98135 0.85911 1.70234 1.10863 1.11963 1.23276 1.22471 1.04729 1.02797 0.88209 1.22902 1.00519 0.95671 0.98220 1.42932 1.36648 1.26553 1.06648 0.73257 1.22552 1.00913 0.97055 0.96371 1.23067 0.99082 1.02903 0.95892 1.22960 1.03977 0.91561 1.03375 0.91402 0.92814 0.90277 0.93845 0.95553 0.78215 0.93650 0.75451 0.80692 0.79966 0.85809 0.88261 0.88837 0.88787 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 7.06 37.16 0.26 -2.16 16 2 C 0.20 3.47 0.54 -131.82 -0.07 3.40 16 3 C 0.14 3.10 4.94 -4.04 -0.02 3.08 16 4 N -0.73 -18.86 5.03 -59.91 -0.30 -19.16 16 5 C -0.23 -6.78 9.99 -15.06 -0.15 -6.93 16 6 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 7 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 8 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 9 Si 0.90 23.19 29.55 -169.99 -5.02 18.17 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.68 -11.84 4.72 -48.67 -0.23 -12.07 16 14 C 0.61 11.30 7.22 -12.53 -0.09 11.21 16 15 O -0.54 -10.72 13.33 5.27 0.07 -10.65 16 16 C 0.16 2.64 7.95 -154.52 -1.23 1.41 16 17 N -0.44 -7.33 10.90 -11.25 -0.12 -7.45 16 18 C -0.03 -0.38 11.85 -17.96 -0.21 -0.59 16 19 C -0.03 -0.37 12.00 -16.93 -0.20 -0.58 16 20 N -0.53 -6.93 6.14 -10.78 -0.07 -7.00 16 21 H 0.43 4.72 8.96 -40.82 -0.37 4.36 16 22 C -0.15 -2.38 4.86 -90.62 -0.44 -2.82 16 23 C -0.17 -2.20 9.63 -26.70 -0.26 -2.46 16 24 C -0.18 -2.29 9.72 -26.70 -0.26 -2.55 16 25 H 0.07 0.91 6.81 -51.93 -0.35 0.55 16 26 H 0.05 0.70 7.00 -51.93 -0.36 0.34 16 27 H 0.08 1.29 6.12 -51.93 -0.32 0.97 16 28 H 0.04 1.04 6.22 -51.93 -0.32 0.71 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.38 10.37 6.63 -40.82 -0.27 10.10 16 31 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.41 6.87 8.07 -40.82 -0.33 6.54 16 33 H 0.18 1.74 8.06 -52.48 -0.42 1.31 16 34 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 2.35 7.09 -51.93 -0.37 1.98 16 36 H 0.10 1.16 5.88 -51.93 -0.31 0.86 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 39 H 0.09 1.10 7.39 -51.93 -0.38 0.71 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -34.26 322.17 -7.90 -42.17 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -5.04 Total: 18.69 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.77 Total: 0.49 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: 0.00 Total: -73.72 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.26 -7.90 -42.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753517013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.714 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds