Wall clock time and date at job start Tue Mar 31 2020 01:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47244 * 2 1 4 4 N 1.46495 * 109.47413 * 180.02562 * 3 2 1 5 5 C 1.36932 * 120.00364 * 180.02562 * 4 3 2 6 6 H 1.08009 * 119.99768 * 359.72595 * 5 4 3 7 7 C 1.38809 * 120.00468 * 179.97438 * 5 4 3 8 8 N 1.31621 * 119.99623 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00212 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47074 * 60.00539 * 9 7 5 11 11 H 1.48503 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47270 * 300.00590 * 9 7 5 13 13 N 1.46494 * 109.47488 * 120.00055 * 2 1 3 14 14 C 1.34780 * 120.00185 * 298.25353 * 13 2 1 15 15 O 1.21607 * 119.99750 * 5.13474 * 14 13 2 16 16 C 1.47407 * 120.00216 * 185.12809 * 14 13 2 17 17 N 1.31616 * 125.86105 * 0.02562 * 16 14 13 18 18 C 1.33104 * 109.09075 * 179.97438 * 17 16 14 19 19 C 1.35563 * 108.35195 * 359.97438 * 18 17 16 20 20 N 1.35404 * 107.16076 * 359.77318 * 19 18 17 21 21 H 0.96998 * 126.44119 * 180.23883 * 20 19 18 22 22 C 1.53003 * 109.47029 * 240.00024 * 2 1 3 23 23 C 1.52997 * 117.49721 * 12.05737 * 22 2 1 24 24 C 1.52993 * 117.50088 * 303.39838 * 22 2 1 25 25 H 1.08996 * 109.47084 * 59.99997 * 1 2 3 26 26 H 1.09005 * 109.46837 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46890 * 299.99560 * 1 2 3 28 28 H 1.08995 * 109.46893 * 60.00176 * 3 2 1 29 29 H 1.09003 * 109.47135 * 300.00410 * 3 2 1 30 30 H 0.96998 * 120.00070 * 359.97438 * 4 3 2 31 31 H 0.97008 * 119.99690 * 179.97438 * 8 7 5 32 32 H 0.97006 * 120.00187 * 118.25139 * 13 2 1 33 33 H 1.08008 * 125.82104 * 180.02562 * 18 17 16 34 34 H 1.07995 * 126.41601 * 179.97438 * 19 18 17 35 35 H 1.09003 * 115.55126 * 157.71923 * 22 2 1 36 36 H 1.09004 * 117.50013 * 359.97438 * 23 22 2 37 37 H 1.09002 * 117.50238 * 145.02205 * 23 22 2 38 38 H 1.09008 * 117.49721 * 214.97997 * 24 22 2 39 39 H 1.09006 * 117.49612 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1897 2.6284 -0.0002 6 1 3.6496 3.5638 -0.0039 7 6 5.5778 2.6285 -0.0002 8 7 6.2359 1.4886 -0.0012 9 14 6.5118 4.2462 -0.0004 10 1 6.1531 5.0249 1.2121 11 1 7.9718 3.9749 -0.0011 12 1 6.1529 5.0249 -1.2129 13 7 2.0184 -0.6906 1.1961 14 6 1.7222 -0.2100 2.4199 15 8 0.9733 0.7413 2.5347 16 6 2.3058 -0.8375 3.6193 17 7 3.1259 -1.8668 3.6294 18 6 3.4455 -2.1566 4.8886 19 6 2.8069 -1.2812 5.7032 20 7 2.0932 -0.4462 4.9115 21 1 1.5344 0.2898 5.2061 22 6 2.0400 -0.7213 -1.2493 23 6 1.0241 -1.0299 -2.3509 24 6 1.5712 -2.1600 -1.4753 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9900 0.6026 -0.0006 31 1 7.2059 1.4886 -0.0016 32 1 2.5550 -1.4938 1.1073 33 1 4.1023 -2.9527 5.2068 34 1 2.8602 -1.2530 6.7815 35 1 3.0547 -0.4683 -1.5569 36 1 -0.0076 -0.7196 -2.1855 37 1 1.3706 -0.9806 -3.3832 38 1 2.2774 -2.8536 -1.9318 39 1 0.8997 -2.5928 -0.7337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753517013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:06 Heat of formation + Delta-G solvation = 43.336824 kcal Electronic energy + Delta-G solvation = -22287.314204 eV Core-core repulsion = 19038.441928 eV Total energy + Delta-G solvation = -3248.872276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.15030 -41.21893 -38.91274 -36.37361 -35.13862 -33.72450 -33.05966 -31.59843 -30.15347 -27.59507 -25.62254 -24.45322 -23.84004 -23.10328 -22.47574 -21.39209 -20.20915 -19.64634 -19.21311 -17.72005 -17.02499 -16.74208 -16.59726 -16.25696 -15.64529 -15.36681 -15.22570 -14.94650 -14.81071 -14.52861 -14.16323 -13.80334 -13.69360 -13.20987 -13.09526 -12.78108 -12.49213 -12.27651 -12.10978 -12.02249 -11.77302 -11.32503 -11.28932 -11.27248 -11.08610 -10.97142 -10.80727 -10.07649 -9.49331 -8.95549 -7.94438 -5.21781 0.39904 1.42401 1.45822 1.52028 1.57047 1.74055 2.43610 2.52281 2.57018 3.04736 3.33788 3.40174 3.62972 3.87332 3.94775 4.08570 4.17248 4.25164 4.37857 4.45188 4.48783 4.61748 4.78956 4.87002 4.88807 4.97555 5.02075 5.03785 5.10714 5.27026 5.33575 5.43933 5.47610 5.58638 5.66602 6.19896 6.26551 6.47702 6.87938 7.16454 7.33588 8.09459 8.36232 9.28141 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011227 B = 0.007320 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.296559 B = 3824.376221 C = 5393.893880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.210 3.790 3 C 0.144 3.856 4 N -0.730 5.730 5 C -0.246 4.246 6 H 0.066 0.934 7 C -0.072 4.072 8 N -0.963 5.963 9 Si 0.971 3.029 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.606 3.394 15 O -0.566 6.566 16 C 0.108 3.892 17 N -0.464 5.464 18 C -0.056 4.056 19 C 0.001 3.999 20 N -0.520 5.520 21 H 0.437 0.563 22 C -0.179 4.179 23 C -0.155 4.155 24 C -0.160 4.160 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.021 0.979 29 H 0.026 0.974 30 H 0.376 0.624 31 H 0.250 0.750 32 H 0.410 0.590 33 H 0.203 0.797 34 H 0.236 0.764 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.913 -10.096 6.923 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.124 3.876 3 C 0.017 3.983 4 N -0.374 5.374 5 C -0.378 4.378 6 H 0.084 0.916 7 C -0.264 4.264 8 N -0.614 5.614 9 Si 0.800 3.200 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.202 1.202 13 N -0.330 5.330 14 C 0.391 3.609 15 O -0.445 6.445 16 C -0.151 4.151 17 N -0.188 5.188 18 C -0.208 4.208 19 C -0.139 4.139 20 N -0.122 5.122 21 H 0.277 0.723 22 C -0.198 4.198 23 C -0.192 4.192 24 C -0.196 4.196 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.044 0.956 30 H 0.209 0.791 31 H 0.059 0.941 32 H 0.246 0.754 33 H 0.220 0.780 34 H 0.252 0.748 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.168 -9.611 6.201 16.700 hybrid contribution 1.020 1.171 0.856 1.774 sum -11.148 -8.440 7.057 15.662 Atomic orbital electron populations 1.22232 0.92315 1.03192 1.03474 1.19990 0.94616 0.90470 0.82490 1.21120 0.84321 0.94954 0.97943 1.42333 1.00773 1.05096 1.89149 1.19536 0.89691 0.87167 1.41428 0.91567 1.25492 0.97162 1.00000 1.03783 1.69817 1.06523 1.25735 1.59328 0.85257 0.77297 0.79446 0.78022 1.21035 1.21774 1.20240 1.45608 1.53608 1.29786 1.03951 1.16654 0.79954 0.81917 0.82329 1.90719 1.38299 1.28713 1.86818 1.22551 1.06050 0.99895 0.86633 1.70149 1.10937 1.12117 1.25565 1.23136 1.05924 1.04396 0.87393 1.23777 0.97085 0.92938 1.00074 1.43036 1.36522 1.26838 1.05851 0.72268 1.22257 1.00063 1.00190 0.97291 1.23208 0.98915 1.01663 0.95447 1.23035 1.03503 0.90080 1.03024 0.89820 0.90507 0.92044 0.96098 0.95573 0.79127 0.94088 0.75356 0.77998 0.74776 0.89602 0.86553 0.88020 0.87872 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 7.06 71.98 0.51 -3.90 16 2 C 0.21 7.31 0.54 3.61 0.00 7.31 16 3 C 0.14 6.49 4.94 86.38 0.43 6.92 16 4 N -0.73 -39.44 5.03 -343.46 -1.73 -41.16 16 5 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 6 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 7 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 8 N -0.96 -60.79 13.06 21.65 0.28 -60.51 16 9 Si 0.97 48.26 29.55 68.60 2.03 50.28 16 10 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.68 -24.35 4.72 -426.16 -2.01 -26.36 16 14 C 0.61 23.05 7.22 86.66 0.63 23.67 16 15 O -0.57 -23.32 13.33 -4.05 -0.05 -23.37 16 16 C 0.11 3.68 7.95 136.28 1.08 4.77 16 17 N -0.46 -15.39 10.90 -189.52 -2.07 -17.46 16 18 C -0.06 -1.35 11.85 83.88 0.99 -0.36 16 19 C 0.00 0.02 12.00 83.52 1.00 1.03 16 20 N -0.52 -13.13 6.14 -188.02 -1.16 -14.28 16 21 H 0.44 9.23 8.96 -92.71 -0.83 8.40 16 22 C -0.18 -5.68 4.86 -10.80 -0.05 -5.73 16 23 C -0.16 -3.66 9.63 30.62 0.29 -3.37 16 24 C -0.16 -3.75 9.72 30.61 0.30 -3.45 16 25 H 0.08 2.10 6.81 -2.39 -0.02 2.08 16 26 H 0.08 1.84 7.00 -2.38 -0.02 1.82 16 27 H 0.06 2.01 6.12 -2.38 -0.01 1.99 16 28 H 0.02 1.05 6.22 -2.39 -0.01 1.03 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.38 21.28 6.63 -92.71 -0.61 20.67 16 31 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 32 H 0.41 14.26 8.07 -92.70 -0.75 13.52 16 33 H 0.20 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.24 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.09 3.41 7.09 -2.39 -0.02 3.39 16 36 H 0.12 2.36 5.88 -2.38 -0.01 2.35 16 37 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.11 2.23 7.39 -2.38 -0.02 2.22 16 Total: -1.00 -76.87 322.17 0.70 -76.17 By element: Atomic # 1 Polarization: 48.58 SS G_CDS: -1.08 Total: 47.50 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.49 Total: 9.21 kcal Atomic # 7 Polarization: -153.10 SS G_CDS: -6.68 Total: -159.78 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.28 kcal Total: -76.87 0.70 -76.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753517013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.504 kcal (2) G-P(sol) polarization free energy of solvation -76.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds