Wall clock time and date at job start Mon Mar 30 2020 23:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30851 * 125.41578 * 2 1 4 4 C 1.33321 * 109.68199 * 179.78168 * 3 2 1 5 5 C 1.36659 * 107.78690 * 0.38000 * 4 3 2 6 6 C 1.46766 * 126.84372 * 179.89725 * 5 4 3 7 7 O 1.21675 * 120.00368 * 359.68260 * 6 5 4 8 8 N 1.34785 * 119.99528 * 179.68421 * 6 5 4 9 9 C 1.46496 * 119.99543 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47337 * 35.00175 * 9 8 6 11 11 C 1.52998 * 109.47078 * 154.99826 * 9 8 6 12 12 N 1.46506 * 109.47237 * 304.99765 * 11 9 8 13 13 C 1.36939 * 120.00073 * 179.72302 * 12 11 9 14 14 H 1.08004 * 119.99859 * 0.02562 * 13 12 11 15 15 C 1.38805 * 119.99849 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00455 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00168 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46615 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47374 * 119.99782 * 17 15 13 20 20 H 1.48495 * 109.47187 * 240.00172 * 17 15 13 21 21 C 1.52994 * 109.47150 * 274.99783 * 9 8 6 22 22 C 1.53011 * 117.50014 * 128.74789 * 21 9 8 23 23 C 1.53002 * 117.49791 * 60.08898 * 21 9 8 24 24 N 1.34488 * 125.41490 * 180.02562 * 2 1 3 25 25 H 0.96998 * 126.47741 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.47704 * 269.97873 * 1 2 3 27 27 H 1.09007 * 109.47240 * 29.97933 * 1 2 3 28 28 H 1.09000 * 109.47195 * 149.97529 * 1 2 3 29 29 H 1.08002 * 126.10783 * 180.27330 * 4 3 2 30 30 H 0.96996 * 119.99961 * 359.97438 * 8 6 5 31 31 H 1.09001 * 109.47671 * 185.00106 * 11 9 8 32 32 H 1.08998 * 109.47454 * 65.00103 * 11 9 8 33 33 H 0.97005 * 119.99811 * 0.02562 * 12 11 9 34 34 H 0.97000 * 120.00679 * 179.97438 * 16 15 13 35 35 H 1.09001 * 115.55265 * 274.41372 * 21 9 8 36 36 H 1.09000 * 117.49671 * 0.02562 * 22 21 9 37 37 H 1.08997 * 117.49621 * 145.02119 * 22 21 9 38 38 H 1.09003 * 117.49834 * 214.97943 * 23 21 9 39 39 H 1.09000 * 117.50079 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7049 0.0048 5 6 3.5976 -0.6608 -0.0007 6 6 4.8029 -1.4982 -0.0004 7 8 5.9038 -0.9800 -0.0007 8 7 4.6902 -2.8413 0.0002 9 6 5.8933 -3.6772 -0.0001 10 1 6.6723 -3.1930 0.5888 11 6 5.5665 -5.0416 0.6103 12 7 4.9857 -4.8543 1.9422 13 6 4.6065 -5.9419 2.6829 14 1 4.7361 -6.9377 2.2854 15 6 4.0557 -5.7644 3.9445 16 7 3.8983 -4.5508 4.4292 17 14 3.5392 -7.2479 4.9554 18 1 3.8198 -8.4897 4.1908 19 1 4.3008 -7.2680 6.2300 20 1 2.0857 -7.1654 5.2485 21 6 6.3832 -3.8655 -1.4372 22 6 7.8549 -3.5636 -1.7273 23 6 6.7652 -2.6099 -2.2236 24 7 2.2864 -1.0960 -0.0005 25 1 1.9849 -2.0180 -0.0013 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3978 1.3722 0.0101 30 1 3.8126 -3.2544 0.0008 31 1 6.4796 -5.6313 0.6918 32 1 4.8528 -5.5633 -0.0273 33 1 4.8656 -3.9597 2.2975 34 1 3.5130 -4.4267 5.3107 35 1 5.9190 -4.6831 -1.9888 36 1 8.4741 -3.2312 -0.8941 37 1 8.3586 -4.1822 -2.4700 38 1 6.5526 -2.6015 -3.2926 39 1 6.6671 -1.6496 -1.7173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754435677.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:14 Heat of formation + Delta-G solvation = 53.439502 kcal Electronic energy + Delta-G solvation = -21639.373086 eV Core-core repulsion = 18390.938895 eV Total energy + Delta-G solvation = -3248.434191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.17369 -39.60141 -37.12744 -35.10248 -33.65638 -32.59202 -31.93456 -31.06169 -28.39693 -27.14437 -24.18764 -22.97746 -22.13741 -21.59639 -21.02873 -20.27418 -20.08268 -18.53518 -17.20683 -16.21986 -15.88389 -15.70184 -15.09234 -14.98189 -14.45664 -14.00478 -13.85743 -13.60534 -13.34117 -13.21420 -12.95520 -12.71258 -12.58782 -12.21392 -11.75878 -11.27267 -11.12607 -10.97305 -10.90029 -10.36563 -10.22583 -10.19675 -10.15306 -10.00789 -9.80358 -9.68419 -9.01273 -8.81150 -8.40774 -7.05949 -5.86702 -3.17461 1.37739 2.83966 2.86981 3.26680 3.35747 3.41907 3.44120 3.50383 4.09381 4.30840 4.47782 4.82819 4.83392 5.02248 5.12628 5.22751 5.25477 5.32710 5.38785 5.46214 5.54628 5.70754 5.72551 5.81336 5.82447 5.86221 6.03189 6.15447 6.31020 6.37868 6.47884 6.57089 6.58122 6.81947 7.18118 7.60299 7.65822 7.94122 8.30363 8.35909 9.42533 9.97265 10.32650 11.35285 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.006007 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.371908 B = 4660.069790 C = 6578.941192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.234 3.766 3 N -0.499 5.499 4 C 0.065 3.935 5 C -0.080 4.080 6 C 0.598 3.402 7 O -0.531 6.531 8 N -0.705 5.705 9 C 0.169 3.831 10 H 0.091 0.909 11 C 0.148 3.852 12 N -0.732 5.732 13 C -0.244 4.244 14 H 0.072 0.928 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.292 1.292 21 C -0.165 4.165 22 C -0.169 4.169 23 C -0.185 4.185 24 N -0.547 5.547 25 H 0.423 0.577 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.182 0.818 30 H 0.397 0.603 31 H 0.038 0.962 32 H 0.024 0.976 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 5.561 -13.287 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.030 4.030 3 N -0.219 5.219 4 C -0.089 4.089 5 C -0.197 4.197 6 C 0.385 3.615 7 O -0.408 6.408 8 N -0.354 5.354 9 C 0.065 3.935 10 H 0.109 0.891 11 C 0.020 3.980 12 N -0.377 5.377 13 C -0.375 4.375 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.738 3.262 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.185 4.185 22 C -0.207 4.207 23 C -0.222 4.222 24 N -0.152 5.152 25 H 0.262 0.738 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.199 0.801 30 H 0.231 0.769 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.903 6.535 -13.220 15.030 hybrid contribution -0.588 -2.146 0.812 2.368 sum -3.491 4.389 -12.408 13.616 Atomic orbital electron populations 1.20293 0.84418 1.04273 1.04177 1.23402 0.95840 0.81644 1.02126 1.70163 1.02161 1.28256 1.21319 1.22592 0.94661 0.91273 1.00374 1.21229 0.83810 0.96005 1.18622 1.16790 0.86845 0.81709 0.76188 1.90752 1.25731 1.73366 1.50995 1.45847 1.10263 1.05241 1.74040 1.20849 0.87141 0.92138 0.93360 0.89077 1.20930 0.97069 0.92070 0.87966 1.42370 1.74538 1.07048 1.13779 1.19254 1.33712 0.87436 0.97108 0.91023 1.24764 1.01873 0.96506 0.97628 1.69679 1.50310 1.19445 1.18370 0.86117 0.77873 0.81850 0.80313 1.20518 1.21761 1.21884 1.22647 0.98543 1.00282 0.97030 1.22903 0.91067 1.03298 1.03423 1.23275 1.03206 0.96337 0.99346 1.43253 1.06145 1.10366 1.55415 0.73781 0.89506 0.88858 0.90465 0.80054 0.76874 0.94442 0.95800 0.78055 0.93473 0.87903 0.88629 0.89157 0.89863 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.51 36.01 0.38 -0.20 16 2 C 0.23 2.88 8.11 -155.62 -1.26 1.62 16 3 N -0.50 -7.38 11.20 -10.58 -0.12 -7.50 16 4 C 0.06 0.98 11.66 -17.48 -0.20 0.78 16 5 C -0.08 -1.21 7.08 -82.14 -0.58 -1.79 16 6 C 0.60 9.89 7.12 -12.81 -0.09 9.80 16 7 O -0.53 -9.95 13.93 5.21 0.07 -9.88 16 8 N -0.70 -10.97 4.49 -55.09 -0.25 -11.22 16 9 C 0.17 2.78 2.43 -67.94 -0.17 2.61 16 10 H 0.09 1.71 7.33 -51.93 -0.38 1.33 16 11 C 0.15 2.78 5.80 -4.04 -0.02 2.75 16 12 N -0.73 -17.55 5.43 -59.91 -0.33 -17.88 16 13 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 14 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 17 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C -0.17 -2.29 5.36 -90.62 -0.49 -2.77 16 22 C -0.17 -2.18 10.18 -26.68 -0.27 -2.46 16 23 C -0.18 -2.51 9.74 -26.69 -0.26 -2.77 16 24 N -0.55 -6.76 6.07 -7.02 -0.04 -6.80 16 25 H 0.42 4.25 8.32 -40.82 -0.34 3.91 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.18 2.50 8.06 -52.49 -0.42 2.08 16 30 H 0.40 5.73 7.85 -40.82 -0.32 5.41 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.39 9.95 7.33 -40.82 -0.30 9.66 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 36 H 0.10 1.29 8.05 -51.93 -0.42 0.88 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -32.49 331.74 -8.54 -41.03 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -5.37 Total: 16.74 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -3.21 Total: 0.47 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -0.01 Total: -70.11 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.49 -8.54 -41.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754435677.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.469 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds