Wall clock time and date at job start Mon Mar 30 2020 23:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30851 * 125.41578 * 2 1 4 4 C 1.33321 * 109.68199 * 179.78168 * 3 2 1 5 5 C 1.36659 * 107.78690 * 0.38000 * 4 3 2 6 6 C 1.46766 * 126.84372 * 179.89725 * 5 4 3 7 7 O 1.21675 * 120.00368 * 359.68260 * 6 5 4 8 8 N 1.34785 * 119.99528 * 179.68421 * 6 5 4 9 9 C 1.46496 * 119.99543 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47337 * 35.00175 * 9 8 6 11 11 C 1.52998 * 109.47078 * 154.99826 * 9 8 6 12 12 N 1.46506 * 109.47237 * 304.99765 * 11 9 8 13 13 C 1.36939 * 120.00073 * 179.72302 * 12 11 9 14 14 H 1.08004 * 119.99859 * 0.02562 * 13 12 11 15 15 C 1.38805 * 119.99849 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00455 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00168 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46615 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47374 * 119.99782 * 17 15 13 20 20 H 1.48495 * 109.47187 * 240.00172 * 17 15 13 21 21 C 1.52994 * 109.47150 * 274.99783 * 9 8 6 22 22 C 1.53011 * 117.50014 * 128.74789 * 21 9 8 23 23 C 1.53002 * 117.49791 * 60.08898 * 21 9 8 24 24 N 1.34488 * 125.41490 * 180.02562 * 2 1 3 25 25 H 0.96998 * 126.47741 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.47704 * 269.97873 * 1 2 3 27 27 H 1.09007 * 109.47240 * 29.97933 * 1 2 3 28 28 H 1.09000 * 109.47195 * 149.97529 * 1 2 3 29 29 H 1.08002 * 126.10783 * 180.27330 * 4 3 2 30 30 H 0.96996 * 119.99961 * 359.97438 * 8 6 5 31 31 H 1.09001 * 109.47671 * 185.00106 * 11 9 8 32 32 H 1.08998 * 109.47454 * 65.00103 * 11 9 8 33 33 H 0.97005 * 119.99811 * 0.02562 * 12 11 9 34 34 H 0.97000 * 120.00679 * 179.97438 * 16 15 13 35 35 H 1.09001 * 115.55265 * 274.41372 * 21 9 8 36 36 H 1.09000 * 117.49671 * 0.02562 * 22 21 9 37 37 H 1.08997 * 117.49621 * 145.02119 * 22 21 9 38 38 H 1.09003 * 117.49834 * 214.97943 * 23 21 9 39 39 H 1.09000 * 117.50079 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7049 0.0048 5 6 3.5976 -0.6608 -0.0007 6 6 4.8029 -1.4982 -0.0004 7 8 5.9038 -0.9800 -0.0007 8 7 4.6902 -2.8413 0.0002 9 6 5.8933 -3.6772 -0.0001 10 1 6.6723 -3.1930 0.5888 11 6 5.5665 -5.0416 0.6103 12 7 4.9857 -4.8543 1.9422 13 6 4.6065 -5.9419 2.6829 14 1 4.7361 -6.9377 2.2854 15 6 4.0557 -5.7644 3.9445 16 7 3.8983 -4.5508 4.4292 17 14 3.5392 -7.2479 4.9554 18 1 3.8198 -8.4897 4.1908 19 1 4.3008 -7.2680 6.2300 20 1 2.0857 -7.1654 5.2485 21 6 6.3832 -3.8655 -1.4372 22 6 7.8549 -3.5636 -1.7273 23 6 6.7652 -2.6099 -2.2236 24 7 2.2864 -1.0960 -0.0005 25 1 1.9849 -2.0180 -0.0013 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3978 1.3722 0.0101 30 1 3.8126 -3.2544 0.0008 31 1 6.4796 -5.6313 0.6918 32 1 4.8528 -5.5633 -0.0273 33 1 4.8656 -3.9597 2.2975 34 1 3.5130 -4.4267 5.3107 35 1 5.9190 -4.6831 -1.9888 36 1 8.4741 -3.2312 -0.8941 37 1 8.3586 -4.1822 -2.4700 38 1 6.5526 -2.6015 -3.2926 39 1 6.6671 -1.6496 -1.7173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754435677.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:12 Heat of formation + Delta-G solvation = 30.846487 kcal Electronic energy + Delta-G solvation = -21640.352793 eV Core-core repulsion = 18390.938895 eV Total energy + Delta-G solvation = -3249.413897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.24835 -40.89037 -38.39474 -36.65859 -35.17826 -33.79533 -33.08350 -32.60103 -29.89453 -28.22179 -25.99632 -24.23851 -23.23741 -23.08275 -22.11109 -21.42149 -21.31390 -19.79056 -19.06771 -17.49459 -17.06495 -16.90523 -16.64337 -16.26080 -15.84440 -15.38523 -15.16598 -15.00442 -14.83387 -14.44718 -14.26133 -13.79997 -13.43407 -13.23580 -13.20717 -12.85775 -12.75131 -12.51700 -12.31123 -12.05996 -11.87481 -11.56389 -11.31375 -11.22887 -11.14876 -11.02482 -10.89135 -10.11701 -9.51613 -9.05026 -7.97011 -5.27245 0.23625 1.46644 1.48417 1.57712 1.74709 1.82725 2.06379 2.27178 2.53626 2.99638 3.37540 3.40407 3.54400 3.79633 3.91536 4.06319 4.10302 4.15663 4.29423 4.33501 4.41998 4.58748 4.62030 4.74837 4.81418 4.85232 4.87758 5.03749 5.07741 5.09998 5.27559 5.32900 5.44410 5.48779 5.51426 6.22818 6.23764 6.42174 6.85994 7.07939 7.30737 8.02690 8.26756 9.25770 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.006007 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.371908 B = 4660.069790 C = 6578.941192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.244 3.756 3 N -0.526 5.526 4 C 0.056 3.944 5 C -0.100 4.100 6 C 0.597 3.403 7 O -0.560 6.560 8 N -0.699 5.699 9 C 0.179 3.821 10 H 0.062 0.938 11 C 0.150 3.850 12 N -0.743 5.743 13 C -0.242 4.242 14 H 0.081 0.919 15 C -0.072 4.072 16 N -0.968 5.968 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.299 1.299 20 H -0.293 1.293 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.184 4.184 24 N -0.540 5.540 25 H 0.434 0.566 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.184 0.816 30 H 0.403 0.597 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 4.109 -14.702 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.020 4.020 3 N -0.247 5.247 4 C -0.098 4.098 5 C -0.216 4.216 6 C 0.385 3.615 7 O -0.439 6.439 8 N -0.348 5.348 9 C 0.074 3.926 10 H 0.080 0.920 11 C 0.023 3.977 12 N -0.386 5.386 13 C -0.373 4.373 14 H 0.098 0.902 15 C -0.265 4.265 16 N -0.619 5.619 17 Si 0.802 3.198 18 H -0.188 1.188 19 H -0.227 1.227 20 H -0.220 1.220 21 C -0.185 4.185 22 C -0.200 4.200 23 C -0.221 4.221 24 N -0.145 5.145 25 H 0.275 0.725 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.201 0.799 30 H 0.239 0.761 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.010 5.030 -14.682 16.029 hybrid contribution -0.244 -1.660 1.203 2.065 sum -4.254 3.370 -13.478 14.530 Atomic orbital electron populations 1.20544 0.81038 1.06201 1.05308 1.24298 0.97499 0.80887 0.99298 1.70190 1.02103 1.29533 1.22847 1.22778 0.95286 0.91593 1.00190 1.21000 0.84415 0.95816 1.20399 1.16959 0.86983 0.81902 0.75652 1.90734 1.26949 1.73866 1.52392 1.45749 1.10336 1.04978 1.73734 1.20627 0.86666 0.90565 0.94709 0.92004 1.21056 0.97055 0.93594 0.85959 1.42532 1.74748 1.05847 1.15488 1.19659 1.32025 0.88440 0.97215 0.90154 1.25538 1.03003 0.98898 0.99051 1.69839 1.52068 1.21500 1.18462 0.85095 0.76981 0.79417 0.78354 1.18828 1.22666 1.21985 1.22571 0.99501 1.01145 0.95285 1.22994 0.90524 1.02986 1.03466 1.23204 1.03698 0.95084 1.00099 1.43215 1.05144 1.11120 1.55062 0.72500 0.88576 0.87755 0.87739 0.79878 0.76143 0.94259 0.93857 0.79506 0.94175 0.85873 0.89891 0.86501 0.87845 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.51 71.24 0.75 -0.21 16 2 C 0.24 5.70 8.11 138.20 1.12 6.83 16 3 N -0.53 -15.39 11.20 -187.40 -2.10 -17.49 16 4 C 0.06 1.72 11.66 84.10 0.98 2.70 16 5 C -0.10 -3.04 7.08 40.01 0.28 -2.76 16 6 C 0.60 20.20 7.12 86.47 0.62 20.82 16 7 O -0.56 -21.84 13.93 -4.27 -0.06 -21.90 16 8 N -0.70 -21.74 4.49 -446.44 -2.01 -23.75 16 9 C 0.18 5.82 2.43 44.99 0.11 5.93 16 10 H 0.06 2.39 7.33 -2.39 -0.02 2.37 16 11 C 0.15 5.47 5.80 86.38 0.50 5.97 16 12 N -0.74 -35.42 5.43 -343.44 -1.87 -37.29 16 13 C -0.24 -12.75 9.99 84.03 0.84 -11.91 16 14 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 15 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 16 N -0.97 -57.78 13.06 21.65 0.28 -57.50 16 17 Si 0.97 44.54 29.55 68.60 2.03 46.57 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 C -0.17 -4.30 5.36 -10.79 -0.06 -4.36 16 22 C -0.16 -3.92 10.18 30.62 0.31 -3.61 16 23 C -0.18 -4.78 9.74 30.62 0.30 -4.48 16 24 N -0.54 -12.88 6.07 -176.12 -1.07 -13.95 16 25 H 0.43 8.15 8.32 -92.71 -0.77 7.38 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.18 5.32 8.06 -2.91 -0.02 5.29 16 30 H 0.40 11.41 7.85 -92.71 -0.73 10.68 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.37 19.55 7.33 -92.70 -0.68 18.87 16 34 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.12 2.75 8.11 -2.39 -0.02 2.73 16 36 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 37 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.09 2.97 5.02 -2.39 -0.01 2.95 16 Total: -1.00 -70.07 331.74 0.35 -69.72 By element: Atomic # 1 Polarization: 45.29 SS G_CDS: -1.08 Total: 44.21 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.22 Total: 11.38 kcal Atomic # 7 Polarization: -143.22 SS G_CDS: -6.76 Total: -149.98 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.90 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.07 0.35 -69.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754435677.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.565 kcal (2) G-P(sol) polarization free energy of solvation -70.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds