Wall clock time and date at job start Mon Mar 30 2020 23:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46799 * 146.11909 * 3 2 1 5 5 N 1.46499 * 109.47093 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99971 * 269.99998 * 5 4 3 7 7 C 1.50699 * 109.47178 * 269.99975 * 6 5 4 8 8 H 1.08000 * 119.99971 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00163 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99919 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99891 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47046 * 90.00394 * 11 9 7 13 13 H 1.48500 * 109.46774 * 210.00042 * 11 9 7 14 14 H 1.48499 * 109.47162 * 330.00487 * 11 9 7 15 15 C 1.34771 * 120.00114 * 89.99755 * 5 4 3 16 16 O 1.21278 * 120.00224 * 179.97438 * 15 5 4 17 17 C 1.50696 * 120.00023 * 0.02562 * 15 5 4 18 18 C 1.53002 * 109.47344 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.46817 * 64.99877 * 18 17 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99683 * 18 17 15 24 24 H 1.08996 * 109.47537 * 26.12245 * 3 2 1 25 25 H 1.08999 * 109.47191 * 266.11424 * 3 2 1 26 26 H 1.08996 * 109.46801 * 59.99886 * 4 3 2 27 27 H 1.08999 * 109.46853 * 299.99722 * 4 3 2 28 28 H 1.09008 * 109.47157 * 29.99944 * 6 5 4 29 29 H 1.08995 * 109.47246 * 150.00065 * 6 5 4 30 30 H 0.97001 * 120.00317 * 179.97438 * 10 9 7 31 31 H 1.09008 * 109.47224 * 59.99699 * 17 15 5 32 32 H 1.08997 * 109.47214 * 299.99692 * 17 15 5 33 33 H 1.09002 * 109.47070 * 305.00057 * 18 17 15 34 34 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 35 35 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 36 36 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 38 38 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 39 39 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 40 40 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 42 42 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 43 43 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.1985 -0.8042 5 7 4.5824 1.1996 -0.8037 6 6 5.3141 1.9076 0.2497 7 6 5.5644 3.3297 -0.1813 8 1 5.2132 3.6721 -1.1435 9 6 6.2408 4.1942 0.6532 10 7 6.6680 3.7774 1.8250 11 14 6.5516 5.9568 0.1185 12 1 5.4206 6.8137 0.5567 13 1 7.8110 6.4461 0.7347 14 1 6.6702 6.0118 -1.3607 15 6 5.2571 0.5492 -1.7723 16 8 6.4699 0.5505 -1.7722 17 6 4.5045 -0.1786 -2.8562 18 6 5.4995 -0.8259 -3.8216 19 6 6.2948 -1.9061 -3.0857 20 6 7.2894 -2.5539 -4.0510 21 6 6.5289 -3.1866 -5.2183 22 6 5.7337 -2.1064 -5.9542 23 6 4.7395 -1.4585 -4.9891 24 1 2.9718 -0.9218 -0.4524 25 1 2.9713 0.0705 1.0253 26 1 2.7536 2.1210 -0.3518 27 1 2.7541 1.1287 -1.8295 28 1 4.7247 1.9042 1.1667 29 1 6.2668 1.4091 0.4283 30 1 7.1442 4.3853 2.4120 31 1 3.8778 0.5279 -3.4007 32 1 3.8780 -0.9499 -2.4085 33 1 6.1833 -0.0669 -4.2017 34 1 6.8363 -1.4556 -2.2539 35 1 5.6111 -2.6651 -2.7055 36 1 7.8557 -3.3238 -3.5269 37 1 7.9732 -1.7951 -4.4316 38 1 5.8452 -3.9454 -4.8378 39 1 7.2376 -3.6477 -5.9063 40 1 5.1923 -2.5570 -6.7860 41 1 6.4175 -1.3476 -6.3347 42 1 4.0559 -2.2175 -4.6090 43 1 4.1730 -0.6889 -5.5134 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057613172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:35 Heat of formation + Delta-G solvation = -44.857293 kcal Electronic energy + Delta-G solvation = -21986.498082 eV Core-core repulsion = 18837.341766 eV Total energy + Delta-G solvation = -3149.156316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69853 -38.03385 -36.80368 -35.19972 -33.03485 -32.33450 -30.83423 -30.59350 -28.13346 -26.26618 -23.98121 -22.95540 -22.49895 -21.16104 -19.62113 -18.38577 -17.54451 -16.48253 -16.39799 -15.54291 -15.22691 -14.93834 -14.67988 -14.31119 -14.12131 -13.97423 -13.72107 -13.29251 -13.10572 -12.48378 -12.41937 -12.37300 -12.14048 -12.07571 -11.72393 -11.69661 -11.41530 -11.25857 -11.04459 -10.98768 -10.85938 -10.77260 -10.61508 -10.32552 -10.18234 -10.06289 -9.92390 -9.66387 -8.83023 -8.46735 -7.79734 -6.08183 -4.12582 2.74177 2.82123 3.28423 3.34556 3.36481 3.41799 3.69025 4.22364 4.42247 4.72987 4.80663 4.81718 5.01628 5.13075 5.14715 5.22619 5.27147 5.34722 5.43265 5.45937 5.58620 5.59766 5.64630 5.70991 5.77485 5.83715 5.88063 5.97459 6.07166 6.11000 6.17928 6.27786 6.30059 6.38334 6.64431 6.70545 6.97494 7.38763 7.46372 7.58487 7.88220 8.18930 8.31540 8.86577 9.04210 9.53045 10.99913 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.005279 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.210719 B = 5302.744159 C = 6888.219312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.218 3.782 3 C -0.051 4.051 4 C 0.119 3.881 5 N -0.600 5.600 6 C 0.245 3.755 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.507 3.493 16 O -0.530 6.530 17 C -0.141 4.141 18 C -0.070 4.070 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.115 4.115 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 -12.138 -10.414 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.100 4.100 3 C -0.092 4.092 4 C -0.008 4.008 5 N -0.331 5.331 6 C 0.126 3.874 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.294 3.706 16 O -0.406 6.406 17 C -0.181 4.181 18 C -0.089 4.089 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.152 4.152 24 H 0.124 0.876 25 H 0.134 0.866 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.153 -12.062 -10.228 16.633 hybrid contribution 0.502 1.087 -0.134 1.205 sum -4.650 -10.975 -10.362 15.794 Atomic orbital electron populations 1.81206 1.13067 1.08926 1.09233 1.29132 0.95126 0.92936 0.92841 1.19913 0.81276 1.02510 1.05514 1.21278 0.82410 0.97188 0.99920 1.48240 1.04724 1.51597 1.28563 1.19320 0.92603 0.91288 0.84231 1.21422 1.36642 0.95475 1.03074 0.92446 1.24911 0.95333 0.98855 0.94870 1.69915 1.38375 1.35882 1.09128 0.86531 0.77696 0.84520 0.78883 1.20671 1.21115 1.19909 1.20414 0.88204 0.79352 0.82635 1.90646 1.13883 1.61093 1.75011 1.21849 0.99277 1.00172 0.96797 1.20890 0.96291 0.97609 0.94109 1.21703 0.97951 0.96953 0.99057 1.21506 0.98067 0.99664 0.96272 1.21551 0.98838 0.97781 0.97488 1.21499 0.98178 0.98257 0.97645 1.21596 0.97699 0.99645 0.96268 0.87568 0.86574 0.88961 0.90616 0.94919 0.93600 0.92703 0.89529 0.89754 0.90390 0.89470 0.93026 0.92466 0.92009 0.92335 0.92626 0.92487 0.92038 0.92177 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.58 18.54 42.16 0.78 -5.79 16 2 C 0.22 2.63 15.43 -20.76 -0.32 2.31 16 3 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 4 C 0.12 1.57 5.17 -4.04 -0.02 1.55 16 5 N -0.60 -10.83 2.46 -175.06 -0.43 -11.26 16 6 C 0.24 5.77 5.16 -5.19 -0.03 5.74 16 7 C -0.53 -14.07 9.39 -34.44 -0.32 -14.39 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 11 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.51 9.06 7.39 -10.99 -0.08 8.98 16 16 O -0.53 -11.79 13.55 5.56 0.08 -11.71 16 17 C -0.14 -1.77 3.73 -27.88 -0.10 -1.88 16 18 C -0.07 -0.88 1.84 -90.62 -0.17 -1.05 16 19 C -0.12 -1.53 4.94 -26.73 -0.13 -1.67 16 20 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 21 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 22 C -0.12 -1.12 5.92 -26.76 -0.16 -1.28 16 23 C -0.11 -1.14 5.20 -26.76 -0.14 -1.28 16 24 H 0.11 0.90 7.22 -51.93 -0.38 0.52 16 25 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 27 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 28 H 0.03 0.77 8.07 -51.92 -0.42 0.35 16 29 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.09 0.98 7.40 -51.92 -0.38 0.60 16 32 H 0.08 0.85 7.19 -51.93 -0.37 0.48 16 33 H 0.08 1.16 7.95 -51.93 -0.41 0.74 16 34 H 0.09 1.40 5.95 -51.93 -0.31 1.09 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -31.49 349.45 -7.84 -39.33 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.19 Total: -2.41 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.06 Total: -4.86 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 1.09 Total: -41.85 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.49 -7.84 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057613172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.527 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds