Wall clock time and date at job start Mon Mar 30 2020 23:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46799 * 146.11909 * 3 2 1 5 5 N 1.46499 * 109.47093 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99971 * 269.99998 * 5 4 3 7 7 C 1.50699 * 109.47178 * 269.99975 * 6 5 4 8 8 H 1.08000 * 119.99971 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00163 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99919 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99891 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47046 * 90.00394 * 11 9 7 13 13 H 1.48500 * 109.46774 * 210.00042 * 11 9 7 14 14 H 1.48499 * 109.47162 * 330.00487 * 11 9 7 15 15 C 1.34771 * 120.00114 * 89.99755 * 5 4 3 16 16 O 1.21278 * 120.00224 * 179.97438 * 15 5 4 17 17 C 1.50696 * 120.00023 * 0.02562 * 15 5 4 18 18 C 1.53002 * 109.47344 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.46817 * 64.99877 * 18 17 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99683 * 18 17 15 24 24 H 1.08996 * 109.47537 * 26.12245 * 3 2 1 25 25 H 1.08999 * 109.47191 * 266.11424 * 3 2 1 26 26 H 1.08996 * 109.46801 * 59.99886 * 4 3 2 27 27 H 1.08999 * 109.46853 * 299.99722 * 4 3 2 28 28 H 1.09008 * 109.47157 * 29.99944 * 6 5 4 29 29 H 1.08995 * 109.47246 * 150.00065 * 6 5 4 30 30 H 0.97001 * 120.00317 * 179.97438 * 10 9 7 31 31 H 1.09008 * 109.47224 * 59.99699 * 17 15 5 32 32 H 1.08997 * 109.47214 * 299.99692 * 17 15 5 33 33 H 1.09002 * 109.47070 * 305.00057 * 18 17 15 34 34 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 35 35 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 36 36 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 38 38 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 39 39 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 40 40 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 42 42 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 43 43 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.1985 -0.8042 5 7 4.5824 1.1996 -0.8037 6 6 5.3141 1.9076 0.2497 7 6 5.5644 3.3297 -0.1813 8 1 5.2132 3.6721 -1.1435 9 6 6.2408 4.1942 0.6532 10 7 6.6680 3.7774 1.8250 11 14 6.5516 5.9568 0.1185 12 1 5.4206 6.8137 0.5567 13 1 7.8110 6.4461 0.7347 14 1 6.6702 6.0118 -1.3607 15 6 5.2571 0.5492 -1.7723 16 8 6.4699 0.5505 -1.7722 17 6 4.5045 -0.1786 -2.8562 18 6 5.4995 -0.8259 -3.8216 19 6 6.2948 -1.9061 -3.0857 20 6 7.2894 -2.5539 -4.0510 21 6 6.5289 -3.1866 -5.2183 22 6 5.7337 -2.1064 -5.9542 23 6 4.7395 -1.4585 -4.9891 24 1 2.9718 -0.9218 -0.4524 25 1 2.9713 0.0705 1.0253 26 1 2.7536 2.1210 -0.3518 27 1 2.7541 1.1287 -1.8295 28 1 4.7247 1.9042 1.1667 29 1 6.2668 1.4091 0.4283 30 1 7.1442 4.3853 2.4120 31 1 3.8778 0.5279 -3.4007 32 1 3.8780 -0.9499 -2.4085 33 1 6.1833 -0.0669 -4.2017 34 1 6.8363 -1.4556 -2.2539 35 1 5.6111 -2.6651 -2.7055 36 1 7.8557 -3.3238 -3.5269 37 1 7.9732 -1.7951 -4.4316 38 1 5.8452 -3.9454 -4.8378 39 1 7.2376 -3.6477 -5.9063 40 1 5.1923 -2.5570 -6.7860 41 1 6.4175 -1.3476 -6.3347 42 1 4.0559 -2.2175 -4.6090 43 1 4.1730 -0.6889 -5.5134 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057613172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:35 Heat of formation + Delta-G solvation = -62.087606 kcal Electronic energy + Delta-G solvation = -21987.245244 eV Core-core repulsion = 18837.341766 eV Total energy + Delta-G solvation = -3149.903479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99179 -39.05718 -37.91036 -36.60661 -34.88715 -33.46200 -32.10211 -31.46475 -29.66751 -27.65174 -25.27532 -24.56031 -23.37598 -22.21016 -20.51170 -19.73795 -18.75036 -18.30097 -17.72484 -17.03159 -16.25578 -16.14395 -16.08705 -15.63384 -15.05808 -14.92893 -14.81449 -14.50226 -14.29927 -14.13045 -13.62296 -13.50550 -13.35696 -13.08977 -12.97492 -12.84547 -12.78239 -12.62714 -12.49473 -12.39242 -12.15341 -11.90382 -11.81440 -11.68228 -11.65222 -11.22558 -11.01259 -10.79815 -10.57713 -10.24848 -9.39077 -8.17113 -6.29420 1.39069 1.41450 1.50814 1.72412 1.86203 2.00748 2.35258 2.48102 3.12924 3.18651 3.82125 3.83902 3.94835 4.06236 4.15971 4.17292 4.33034 4.44249 4.55511 4.58809 4.66641 4.71978 4.77292 4.86206 4.87455 4.95189 4.96684 5.09539 5.10109 5.21177 5.28311 5.35623 5.36531 5.41119 5.44650 5.51557 5.62757 5.70122 5.73916 5.92979 6.15353 6.62799 6.78822 6.88697 7.36884 7.63130 8.89344 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.005279 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.210719 B = 5302.744159 C = 6888.219312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.247 3.753 3 C -0.038 4.038 4 C 0.114 3.886 5 N -0.602 5.602 6 C 0.260 3.740 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.957 3.043 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.499 3.501 16 O -0.584 6.584 17 C -0.129 4.129 18 C -0.069 4.069 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.108 4.108 24 H 0.138 0.862 25 H 0.117 0.883 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.031 0.969 29 H 0.002 0.998 30 H 0.265 0.735 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 -13.149 -12.127 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.010 4.010 5 N -0.333 5.333 6 C 0.138 3.862 7 C -0.577 4.577 8 H 0.070 0.930 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.783 3.217 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.289 3.711 16 O -0.464 6.464 17 C -0.169 4.169 18 C -0.088 4.088 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.145 4.145 24 H 0.156 0.844 25 H 0.135 0.865 26 H 0.098 0.902 27 H 0.126 0.874 28 H 0.049 0.951 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.195 -13.081 -11.955 19.126 hybrid contribution 1.182 1.386 0.413 1.868 sum -6.013 -11.695 -11.542 17.497 Atomic orbital electron populations 1.81252 1.14388 1.10422 1.10723 1.29150 0.94929 0.91529 0.91456 1.19837 0.80070 1.02514 1.05458 1.21493 0.79211 0.98007 1.02324 1.48138 1.06668 1.51019 1.27429 1.18752 0.91423 0.90070 0.85911 1.21763 1.36281 0.97023 1.02682 0.92986 1.25722 0.95262 1.02858 0.94980 1.70023 1.39246 1.37236 1.10159 0.85570 0.77869 0.80059 0.78242 1.19191 1.21013 1.19949 1.21439 0.87905 0.78750 0.83055 1.90635 1.16635 1.62920 1.76216 1.21897 0.99079 1.00943 0.94951 1.20867 0.96070 0.96782 0.95122 1.21636 0.98314 0.97403 0.98158 1.21504 0.97857 0.99271 0.97002 1.21524 0.99053 0.97931 0.96648 1.21529 0.98094 0.97978 0.98150 1.21558 0.97642 1.00262 0.95034 0.84439 0.86480 0.90236 0.87399 0.95120 0.97977 0.92623 0.87260 0.85968 0.93754 0.93560 0.91066 0.92196 0.93949 0.91025 0.91735 0.90489 0.93264 0.90202 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.41 18.54 20.01 0.37 -13.04 16 2 C 0.25 5.28 15.43 89.44 1.38 6.66 16 3 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 4 C 0.11 2.77 5.17 86.38 0.45 3.22 16 5 N -0.60 -21.51 2.46 -826.16 -2.03 -23.54 16 6 C 0.26 12.65 5.16 85.63 0.44 13.09 16 7 C -0.54 -29.36 9.39 25.60 0.24 -29.12 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.01 0.60 5.46 84.66 0.46 1.06 16 10 N -0.93 -54.21 13.29 21.45 0.28 -53.93 16 11 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 C 0.50 17.73 7.39 87.66 0.65 18.37 16 16 O -0.58 -27.25 13.55 -3.02 -0.04 -27.29 16 17 C -0.13 -2.90 3.73 29.85 0.11 -2.79 16 18 C -0.07 -1.64 1.84 -10.79 -0.02 -1.66 16 19 C -0.12 -2.96 4.94 30.59 0.15 -2.81 16 20 C -0.12 -2.66 5.92 30.60 0.18 -2.48 16 21 C -0.11 -1.92 5.92 30.60 0.18 -1.73 16 22 C -0.12 -1.95 5.92 30.58 0.18 -1.77 16 23 C -0.11 -1.77 5.20 30.58 0.16 -1.61 16 24 H 0.14 1.69 7.22 -2.39 -0.02 1.68 16 25 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 27 H 0.11 1.95 6.44 -2.39 -0.02 1.94 16 28 H 0.03 1.49 8.07 -2.38 -0.02 1.47 16 29 H 0.00 0.12 7.42 -2.39 -0.02 0.10 16 30 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.11 2.03 7.40 -2.38 -0.02 2.01 16 32 H 0.12 1.85 7.19 -2.39 -0.02 1.84 16 33 H 0.04 1.34 7.95 -2.39 -0.02 1.32 16 34 H 0.05 1.55 5.95 -2.39 -0.01 1.54 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -72.52 349.45 6.33 -66.20 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.98 Total: 7.64 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 4.74 Total: -2.06 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -1.37 Total: -90.51 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.04 Total: -27.29 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.52 6.33 -66.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057613172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.107 kcal (2) G-P(sol) polarization free energy of solvation -72.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds