Wall clock time and date at job start Mon Mar 30 2020 23:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34774 * 120.59110 * 124.62153 * 12 11 10 14 14 O 1.21286 * 119.99766 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00284 * 0.02618 * 13 12 11 16 16 C 1.50698 * 109.47127 * 180.02562 * 15 13 12 17 17 C 1.29443 * 117.96584 * 94.99937 * 16 15 13 18 18 C 1.50062 * 124.07423 * 180.44676 * 17 16 15 19 19 C 1.53025 * 110.15221 * 342.86706 * 18 17 16 20 20 C 1.53391 * 108.43525 * 49.43659 * 19 18 17 21 21 C 1.50077 * 117.95989 * 274.73271 * 16 15 13 22 22 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 23 23 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 24 24 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 26 26 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 27 27 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 28 28 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 29 29 H 1.08997 * 109.46855 * 299.99436 * 15 13 12 30 30 H 1.08994 * 109.46932 * 59.99795 * 15 13 12 31 31 H 1.07993 * 117.95845 * 0.46351 * 17 16 15 32 32 H 1.08999 * 109.35982 * 103.07648 * 18 17 16 33 33 H 1.09006 * 109.35811 * 222.65746 * 18 17 16 34 34 H 1.08999 * 109.64540 * 169.11918 * 19 18 17 35 35 H 1.08997 * 109.64154 * 289.54549 * 19 18 17 36 36 H 1.09006 * 109.64517 * 52.25048 * 20 19 18 37 37 H 1.08998 * 109.64616 * 172.67061 * 20 19 18 38 38 H 1.08994 * 109.35535 * 283.10057 * 21 16 15 39 39 H 1.09003 * 109.35497 * 42.68455 * 21 16 15 40 40 H 1.09004 * 109.60829 * 295.48016 * 22 12 11 41 41 H 1.08993 * 109.75563 * 175.05475 * 22 12 11 42 42 H 1.09001 * 109.60662 * 354.94142 * 23 9 7 43 43 H 1.08998 * 109.61756 * 115.28412 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8770 -2.4918 3.4054 14 8 6.7202 -3.2946 3.0655 15 6 6.1049 -1.6278 4.6189 16 6 7.4459 -1.9549 5.2238 17 6 8.4598 -1.2263 4.8825 18 6 9.8555 -1.4360 5.3924 19 6 9.8323 -2.3112 6.6475 20 6 8.9760 -3.5507 6.3588 21 6 7.5214 -3.1015 6.1892 22 6 4.5005 -3.2084 1.5123 23 6 4.1992 -2.2929 0.3191 24 1 -0.4850 0.8400 -0.0004 25 1 4.2586 0.1714 1.7186 26 1 2.5201 0.1137 2.1099 27 1 2.7995 -1.9334 3.3902 28 1 4.0688 -0.8087 3.9359 29 1 6.0852 -0.5780 4.3263 30 1 5.3199 -1.8157 5.3513 31 1 8.2907 -0.4169 4.1878 32 1 10.4519 -1.9249 4.6221 33 1 10.3011 -0.4708 5.6332 34 1 10.8475 -2.6179 6.8992 35 1 9.4025 -1.7504 7.4773 36 1 9.3237 -4.0314 5.4443 37 1 9.0510 -4.2500 7.1915 38 1 7.1216 -2.7886 7.1537 39 1 6.9300 -3.9341 5.8082 40 1 3.6505 -3.8667 1.6921 41 1 5.3872 -3.8056 1.3004 42 1 3.8352 -2.8898 -0.5171 43 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073099433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:22 Heat of formation + Delta-G solvation = -0.434514 kcal Electronic energy + Delta-G solvation = -22263.308452 eV Core-core repulsion = 19116.078452 eV Total energy + Delta-G solvation = -3147.230000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98657 -38.42643 -36.89417 -33.93341 -33.00074 -31.59623 -30.81313 -30.65649 -27.97663 -26.57957 -23.61290 -23.27157 -23.17447 -21.90429 -20.61749 -18.70651 -17.66108 -17.15100 -16.30237 -15.90662 -15.39205 -15.20290 -14.71151 -14.38575 -14.28575 -13.89303 -13.81267 -13.52550 -13.24695 -12.94865 -12.71177 -12.48348 -12.28912 -12.24752 -12.15670 -11.84248 -11.62586 -11.04418 -10.90888 -10.82660 -10.54338 -10.49534 -10.38238 -10.27182 -10.19644 -9.54080 -9.52604 -8.75734 -8.70561 -8.22397 -7.04787 -6.13555 -3.32085 2.20031 2.92383 3.31615 3.42336 3.45867 3.50640 4.48554 4.52913 4.61656 4.80831 4.82173 4.87588 5.07311 5.14071 5.22555 5.29823 5.38793 5.48932 5.50376 5.54728 5.60838 5.63850 5.71967 5.80414 5.83127 5.86195 5.89657 5.98028 6.06053 6.07243 6.12745 6.23083 6.25795 6.48518 6.56088 6.62409 6.73297 6.94189 7.00544 7.78900 7.84689 8.21312 8.49341 8.84757 9.63198 10.03573 11.00850 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032031 B = 0.004051 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.945253 B = 6909.548383 C = 7264.559308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.040 3.960 3 Si 0.834 3.166 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.258 1.258 7 C -0.276 4.276 8 H 0.083 0.917 9 N -0.600 5.600 10 C 0.131 3.869 11 C 0.085 3.915 12 N -0.601 5.601 13 C 0.513 3.487 14 O -0.549 6.549 15 C -0.110 4.110 16 C -0.095 4.095 17 C -0.153 4.153 18 C -0.086 4.086 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.078 4.078 22 C 0.096 3.904 23 C 0.132 3.868 24 H 0.263 0.737 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.928 -3.119 13.487 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.162 4.162 3 Si 0.661 3.339 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.403 4.403 8 H 0.100 0.900 9 N -0.323 5.323 10 C 0.005 3.995 11 C -0.039 4.039 12 N -0.334 5.334 13 C 0.301 3.699 14 O -0.427 6.427 15 C -0.150 4.150 16 C -0.095 4.095 17 C -0.171 4.171 18 C -0.123 4.123 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.115 4.115 22 C -0.027 4.027 23 C 0.006 3.994 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 15.159 -3.470 13.267 20.441 hybrid contribution 0.135 1.268 -0.290 1.308 sum 15.293 -2.202 12.977 20.178 Atomic orbital electron populations 1.70122 1.06223 1.26978 1.48422 1.25205 0.94777 0.97438 0.98748 0.87610 0.82101 0.86093 0.78129 1.21947 1.21992 1.18283 1.18777 0.96464 0.96906 1.28156 0.89975 1.44297 1.18083 1.42751 1.27161 1.21778 0.99585 0.92192 0.85983 1.22591 0.90961 0.91727 0.98662 1.48059 1.17942 1.39021 1.28376 1.20504 0.81291 0.83778 0.84351 1.90648 1.43810 1.38129 1.70149 1.20883 0.97389 1.00622 0.96123 1.20299 0.93804 0.97032 0.98400 1.21833 0.94312 1.00462 1.00474 1.20385 0.94768 0.99769 0.97363 1.21600 0.99766 0.96693 0.97651 1.21591 0.94947 0.97235 1.01745 1.20355 0.97281 0.96392 0.97514 1.22163 1.01189 0.93616 0.85771 1.21345 0.91826 0.91746 0.94507 0.92682 0.95029 0.90422 0.90889 0.90738 0.88595 0.88587 0.88190 0.91008 0.91420 0.92008 0.91894 0.91463 0.91965 0.91243 0.90971 0.91622 0.89781 0.90781 0.95689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.97 55.49 0.78 -24.90 16 2 C 0.04 1.10 4.80 -17.43 -0.08 1.02 16 3 Si 0.83 20.47 26.47 -169.99 -4.50 15.98 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.03 4.99 56.52 0.28 -5.75 16 7 C -0.28 -7.41 9.84 -15.06 -0.15 -7.55 16 8 H 0.08 2.35 8.05 -52.49 -0.42 1.93 16 9 N -0.60 -13.78 2.71 -171.76 -0.47 -14.24 16 10 C 0.13 2.69 4.58 -3.36 -0.02 2.67 16 11 C 0.09 1.40 6.52 -3.36 -0.02 1.38 16 12 N -0.60 -10.28 2.95 -172.21 -0.51 -10.78 16 13 C 0.51 8.44 7.69 -10.98 -0.08 8.35 16 14 O -0.55 -10.57 15.44 5.55 0.09 -10.48 16 15 C -0.11 -1.40 4.05 -29.03 -0.12 -1.52 16 16 C -0.09 -1.17 4.33 -100.94 -0.44 -1.61 16 17 C -0.15 -1.83 9.37 -35.90 -0.34 -2.16 16 18 C -0.09 -0.85 6.11 -28.18 -0.17 -1.02 16 19 C -0.12 -1.06 6.01 -26.52 -0.16 -1.22 16 20 C -0.12 -1.17 6.02 -26.44 -0.16 -1.33 16 21 C -0.08 -0.87 5.80 -28.09 -0.16 -1.03 16 22 C 0.10 1.71 6.59 -3.60 -0.02 1.68 16 23 C 0.13 2.62 6.67 -3.60 -0.02 2.59 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.66 6.78 -51.93 -0.35 0.31 16 26 H 0.08 1.69 5.60 -51.93 -0.29 1.40 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.07 0.97 5.91 -51.93 -0.31 0.67 16 29 H 0.10 1.12 7.37 -51.93 -0.38 0.74 16 30 H 0.10 1.04 7.88 -51.93 -0.41 0.63 16 31 H 0.10 1.20 7.74 -52.49 -0.41 0.79 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 36 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 42 H 0.07 1.42 7.93 -51.93 -0.41 1.00 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -31.05 331.23 -8.81 -39.86 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.25 Total: -0.67 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.95 Total: 0.26 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.20 Total: -49.93 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.50 Total: 15.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.05 -8.81 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.430 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds