Wall clock time and date at job start Mon Mar 30 2020 23:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34774 * 120.59110 * 124.62153 * 12 11 10 14 14 O 1.21286 * 119.99766 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00284 * 0.02618 * 13 12 11 16 16 C 1.50698 * 109.47127 * 180.02562 * 15 13 12 17 17 C 1.29443 * 117.96584 * 94.99937 * 16 15 13 18 18 C 1.50062 * 124.07423 * 180.44676 * 17 16 15 19 19 C 1.53025 * 110.15221 * 342.86706 * 18 17 16 20 20 C 1.53391 * 108.43525 * 49.43659 * 19 18 17 21 21 C 1.50077 * 117.95989 * 274.73271 * 16 15 13 22 22 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 23 23 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 24 24 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 26 26 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 27 27 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 28 28 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 29 29 H 1.08997 * 109.46855 * 299.99436 * 15 13 12 30 30 H 1.08994 * 109.46932 * 59.99795 * 15 13 12 31 31 H 1.07993 * 117.95845 * 0.46351 * 17 16 15 32 32 H 1.08999 * 109.35982 * 103.07648 * 18 17 16 33 33 H 1.09006 * 109.35811 * 222.65746 * 18 17 16 34 34 H 1.08999 * 109.64540 * 169.11918 * 19 18 17 35 35 H 1.08997 * 109.64154 * 289.54549 * 19 18 17 36 36 H 1.09006 * 109.64517 * 52.25048 * 20 19 18 37 37 H 1.08998 * 109.64616 * 172.67061 * 20 19 18 38 38 H 1.08994 * 109.35535 * 283.10057 * 21 16 15 39 39 H 1.09003 * 109.35497 * 42.68455 * 21 16 15 40 40 H 1.09004 * 109.60829 * 295.48016 * 22 12 11 41 41 H 1.08993 * 109.75563 * 175.05475 * 22 12 11 42 42 H 1.09001 * 109.60662 * 354.94142 * 23 9 7 43 43 H 1.08998 * 109.61756 * 115.28412 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8770 -2.4918 3.4054 14 8 6.7202 -3.2946 3.0655 15 6 6.1049 -1.6278 4.6189 16 6 7.4459 -1.9549 5.2238 17 6 8.4598 -1.2263 4.8825 18 6 9.8555 -1.4360 5.3924 19 6 9.8323 -2.3112 6.6475 20 6 8.9760 -3.5507 6.3588 21 6 7.5214 -3.1015 6.1892 22 6 4.5005 -3.2084 1.5123 23 6 4.1992 -2.2929 0.3191 24 1 -0.4850 0.8400 -0.0004 25 1 4.2586 0.1714 1.7186 26 1 2.5201 0.1137 2.1099 27 1 2.7995 -1.9334 3.3902 28 1 4.0688 -0.8087 3.9359 29 1 6.0852 -0.5780 4.3263 30 1 5.3199 -1.8157 5.3513 31 1 8.2907 -0.4169 4.1878 32 1 10.4519 -1.9249 4.6221 33 1 10.3011 -0.4708 5.6332 34 1 10.8475 -2.6179 6.8992 35 1 9.4025 -1.7504 7.4773 36 1 9.3237 -4.0314 5.4443 37 1 9.0510 -4.2500 7.1915 38 1 7.1216 -2.7886 7.1537 39 1 6.9300 -3.9341 5.8082 40 1 3.6505 -3.8667 1.6921 41 1 5.3872 -3.8056 1.3004 42 1 3.8352 -2.8898 -0.5171 43 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073099433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:21 Heat of formation + Delta-G solvation = -18.187082 kcal Electronic energy + Delta-G solvation = -22264.078261 eV Core-core repulsion = 19116.078452 eV Total energy + Delta-G solvation = -3147.999809 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25396 -39.42901 -38.36702 -35.61088 -34.05061 -33.40942 -32.17244 -31.59253 -29.32711 -27.95125 -25.24151 -24.74553 -24.12031 -22.93124 -21.99976 -20.18840 -18.80190 -18.47922 -17.82650 -17.15078 -16.84610 -16.44017 -16.19885 -15.98052 -15.38562 -15.21815 -14.90060 -14.67717 -14.58030 -14.41643 -14.16917 -13.92112 -13.62647 -13.33274 -13.11039 -12.96582 -12.76884 -12.61960 -12.48717 -12.25926 -12.12413 -11.89184 -11.64322 -11.43344 -11.30314 -11.06066 -10.85039 -10.67552 -9.86039 -9.63447 -8.89324 -8.24811 -5.40588 1.26783 1.34906 1.47249 1.53269 1.65392 2.12164 2.43830 2.92396 3.36848 3.64999 3.71117 3.81402 4.08656 4.11126 4.16618 4.27483 4.33034 4.35975 4.41833 4.48131 4.53792 4.58521 4.64384 4.71277 4.75451 4.76535 4.77561 4.86070 4.98606 5.01994 5.05850 5.11236 5.16704 5.20699 5.33669 5.48660 5.52231 5.76565 5.83922 6.09387 6.12698 6.49043 6.88262 7.19409 7.60690 8.03500 8.93233 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032031 B = 0.004051 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.945253 B = 6909.548383 C = 7264.559308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.899 3.101 4 H -0.305 1.305 5 H -0.291 1.291 6 H -0.237 1.237 7 C -0.269 4.269 8 H 0.050 0.950 9 N -0.613 5.613 10 C 0.125 3.875 11 C 0.096 3.904 12 N -0.606 5.606 13 C 0.512 3.488 14 O -0.580 6.580 15 C -0.107 4.107 16 C -0.110 4.110 17 C -0.158 4.158 18 C -0.089 4.089 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.079 4.079 22 C 0.105 3.895 23 C 0.133 3.867 24 H 0.264 0.736 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.861 -2.203 15.740 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.207 4.207 3 Si 0.726 3.274 4 H -0.233 1.233 5 H -0.217 1.217 6 H -0.161 1.161 7 C -0.397 4.397 8 H 0.068 0.932 9 N -0.337 5.337 10 C -0.001 4.001 11 C -0.028 4.028 12 N -0.339 5.339 13 C 0.302 3.698 14 O -0.460 6.460 15 C -0.146 4.146 16 C -0.110 4.110 17 C -0.176 4.176 18 C -0.126 4.126 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.116 4.116 22 C -0.019 4.019 23 C 0.007 3.993 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 17.133 -2.552 15.549 23.277 hybrid contribution -0.436 0.888 -1.031 1.429 sum 16.697 -1.664 14.518 22.189 Atomic orbital electron populations 1.70196 1.07738 1.27646 1.51198 1.25683 0.95206 1.00283 0.99510 0.86588 0.81711 0.81861 0.77265 1.23344 1.21716 1.16092 1.18696 0.97445 0.95939 1.27653 0.93249 1.44411 1.17746 1.43607 1.27936 1.21858 0.99026 0.92729 0.86493 1.22478 0.91107 0.91211 0.97960 1.48149 1.18489 1.39018 1.28235 1.21189 0.80203 0.83519 0.84879 1.90638 1.44669 1.39601 1.71122 1.20951 0.98529 1.00396 0.94714 1.20457 0.93802 0.97689 0.99076 1.22065 0.95252 1.00237 1.00080 1.20450 0.93605 1.00829 0.97694 1.21593 1.00440 0.95940 0.97316 1.21597 0.94548 0.98058 1.01399 1.20385 0.97764 0.95395 0.98061 1.21941 1.01212 0.93218 0.85537 1.21403 0.90895 0.91420 0.95566 0.92698 0.94570 0.91810 0.91172 0.86445 0.87080 0.86180 0.88525 0.91624 0.89855 0.90582 0.90982 0.93509 0.90396 0.89329 0.92703 0.91780 0.89452 0.90991 0.95515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.97 21.65 0.30 -54.93 16 2 C -0.01 -0.47 4.80 84.86 0.41 -0.07 16 3 Si 0.90 42.49 26.47 68.60 1.82 44.31 16 4 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.24 -10.28 4.99 99.48 0.50 -9.78 16 7 C -0.27 -14.63 9.84 84.04 0.83 -13.80 16 8 H 0.05 2.95 8.05 -2.91 -0.02 2.93 16 9 N -0.61 -27.77 2.71 -697.32 -1.89 -29.66 16 10 C 0.12 4.85 4.58 86.56 0.40 5.24 16 11 C 0.10 2.90 6.52 86.56 0.56 3.47 16 12 N -0.61 -19.42 2.95 -817.13 -2.41 -21.82 16 13 C 0.51 15.69 7.69 87.66 0.67 16.36 16 14 O -0.58 -21.61 15.44 -3.05 -0.05 -21.65 16 15 C -0.11 -2.35 4.05 29.10 0.12 -2.23 16 16 C -0.11 -2.44 4.33 -15.09 -0.07 -2.51 16 17 C -0.16 -3.42 9.37 27.04 0.25 -3.17 16 18 C -0.09 -1.55 6.11 29.66 0.18 -1.37 16 19 C -0.12 -1.73 6.01 30.73 0.18 -1.55 16 20 C -0.12 -2.12 6.02 30.79 0.19 -1.94 16 21 C -0.08 -1.57 5.80 29.71 0.17 -1.40 16 22 C 0.11 3.62 6.59 86.42 0.57 4.19 16 23 C 0.13 5.18 6.67 86.42 0.58 5.76 16 24 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.04 1.39 6.78 -2.39 -0.02 1.37 16 26 H 0.06 2.66 5.60 -2.39 -0.01 2.65 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.12 2.54 5.91 -2.39 -0.01 2.53 16 29 H 0.11 2.14 7.37 -2.39 -0.02 2.12 16 30 H 0.12 2.08 7.88 -2.39 -0.02 2.06 16 31 H 0.10 2.10 7.74 -2.91 -0.02 2.08 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 36 H 0.05 1.02 8.12 -2.38 -0.02 1.00 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.09 2.97 7.00 -2.39 -0.02 2.95 16 42 H 0.07 2.78 7.93 -2.39 -0.02 2.76 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -67.28 331.23 3.58 -63.70 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.76 Total: 13.06 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 5.05 Total: 7.01 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.99 Total: -106.42 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.82 Total: 44.31 kcal Total: -67.28 3.58 -63.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.513 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds